Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04858 and BPUM_2934

See Amino acid alignment / Visit BSNT_04858 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04858___yusD.1.24716.seq
#    -bsequence dna-align/BPUM_2934.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04858___yusD-BPUM_2934.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04858___yusD-BPUM_2934.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04858___yusD
# 2: BPUM_2934
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 388
# Identity:     220/388 (56.7%)
# Similarity:   220/388 (56.7%)
# Gaps:          89/388 (22.9%)
# Score: 523.5
# 
#
#=======================================

BSNT_04858___      1 ATGGAGAAAGCGGAAGTTTTAGAA--GATGAGTATCA----GCATC---T     41
                     .||||.||||        |.|.||  .||| |||.||    |||.|   |
BPUM_2934          1 GTGGAAAAAG--------TGAAAACCCATG-GTAACAAAGGGCAGCGCTT     41

BSNT_04858___     42 GTTTTTAAAACCCCTTTTGAATGC-CTCAACA------TTGCTCATTACC     84
                     .||..|||||||.|       ||| ||||.||      |||...|||||.
BPUM_2934         42 ATTGCTAAAACCGC-------TGCTCTCATCATCATCCTTGAAGATTACA     84

BSNT_04858___     85 TTCCAAGGAGAAGCAGAAGCCTTAACCGTCT----CAATAA------ACG    124
                     ||      .||.||.|||.|  |.||  |||    ||.|.|      |.|
BPUM_2934         85 TT------TGAGGCGGAAAC--TGAC--TCTTGTACATTGATTGTGGATG    124

BSNT_04858___    125 AACAGGGAGAAATGAAAAAAGTTTCTCCGCCCCAAACG-----TCCAACC    169
                     |.|..||.|||.||||.|||.|..||     .|||..|     ||..|.|
BPUM_2934        125 AGCGTGGTGAAGTGAAGAAACTACCT-----GCAATTGAGTTATCGGATC    169

BSNT_04858___    170 TGACCTTTTACG--GAAACCAAACGGAAATTATTGATTTATTGCACGGAG    217
                     |.|.||||||.|  ||.|..|||  |||||..|..|.|||||..|.||||
BPUM_2934        170 TTATCTTTTATGGTGAGAGAAAA--GAAATACTACAATTATTAGATGGAG    217

BSNT_04858___    218 ACATTTCCCTTCAGCACCTGATTCAG-AGCGG--AAGCCTCAAAGTAAAG    264
                     |.||.|||.|.|||||..|.||| || ||.||  |||  |.||||||||.
BPUM_2934        218 ATATGTCCTTACAGCAGTTAATT-AGCAGGGGACAAG--TGAAAGTAAAA    264

BSNT_04858___    265 GGGTCATTCAGGGCCCTGTTAAAGCTGGAAGCCATTCTCTGGCTGACAAA    314
                     |||||||||.|.||.||..|||..||.||.||..|.|||||||||||.||
BPUM_2934        265 GGGTCATTCCGCGCGCTCCTAAGACTAGAGGCGGTGCTCTGGCTGACGAA    314

BSNT_04858___    315 TGGATTTTTTCAGAGGGTTTTAAAAAAT--TAA-----    345
                     .||.|||||||          .||||||  |||     
BPUM_2934        315 CGGTTTTTTTC----------GAAAAATGATAACGTAG    342


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