Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04855 and BPUM_2932

See Amino acid alignment / Visit BSNT_04855 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence dna-align/BSNT_04855___yusC.1.24716.seq
#    -bsequence dna-align/BPUM_2932.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04855___yusC-BPUM_2932.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04855___yusC-BPUM_2932.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04855___yusC
# 2: BPUM_2932
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity:     745/1068 (69.8%)
# Similarity:   745/1068 (69.8%)
# Gaps:          84/1068 ( 7.9%)
# Score: 2451.5
# 
#
#=======================================

BSNT_04855___      1 TTGATCAATCTTCAGGATGTTTCAAAAGTTTACAAATCGAAACATGGAGA     50
                     .|||||.||.|.|||.||||.||||||...||..|.||.|||...|||.|
BPUM_2932          1 GTGATCCATTTACAGAATGTATCAAAAACGTATCATTCAAAAAGCGGAAA     50

BSNT_04855___     51 TGTCAATGCTGTCCAAAATGTC----TCGCTTTCCATTAAAAAAGGTGAG     96
                     |||..||||.||..||.|.|||    |.|.|    |||...||||||||.
BPUM_2932         51 TGTTGATGCCGTGAAAGACGTCAACTTGGAT----ATTGGTAAAGGTGAA     96

BSNT_04855___     97 ATTTTTGGAATTATAGGATATAGCGGAGCTGGTAAGAGTTCCTTAATCCG    146
                     ||.||.||||||||.||.||||||||.||.||.||.||.||..|.||.||
BPUM_2932         97 ATATTCGGAATTATTGGGTATAGCGGTGCCGGAAAAAGCTCGCTGATTCG    146

BSNT_04855___    147 TCTGCTGAACGGCCTTGAGAAACCAACCTCAGGAACCGTGGAAGTGGC-G    195
                     .||..|.|||||.||.|||...|||||...|||||..||.|||||||| |
BPUM_2932        147 CCTATTAAACGGTCTGGAGCTGCCAACAGAAGGAATTGTTGAAGTGGCAG    196

BSNT_04855___    196 GGAACCAAGATTAATGAAGTA---AATGGACG------CGGTTTAAGAAA    236
                     |.|||| .|||.|||||||||   ||||  ||      |||       ||
BPUM_2932        197 GCAACC-GGATCAATGAAGTATCGAATG--CGAAACTTCGG-------AA    236

BSNT_04855___    237 AGCACGCCATGAGATCAGTATGATTTTCCAGCATTTCAATTTGCTTTGGT    286
                     ||||.|.||.||.|||||.||||||||||||||.||.||..|.|||||||
BPUM_2932        237 AGCAAGACAAGAAATCAGCATGATTTTCCAGCACTTTAACCTACTTTGGT    286

BSNT_04855___    287 CGCGGACTGTCAGAGATAATATCATGTTTCCTTTGGAAATTGCCGGGGT-    335
                     |..|.||.||.|||.|.|||||.|||||.||..|.||.||.||.||.|| 
BPUM_2932        287 CAAGAACAGTGAGACAAAATATTATGTTCCCACTTGAGATCGCAGGTGTA    336

BSNT_04855___    336 --GAAAAAGAGCGAGCGGATCAAGCGCGCCAATGAACTGATTAAACTGGT    383
                       ||.|..||   |.||||...||||.||.|||||||||||||||.|.||
BPUM_2932        337 CCGACATCGA---AACGGAGAGAGCGTGCGAATGAACTGATTAAATTAGT    383

BSNT_04855___    384 AGGTTTAGAAGGAAAAGAAAAATCTTATCCATCTCAACTGAGCGGCGGTC    433
                     .||||||||||||||||||||..|.|||||.|||||.||.||||||||.|
BPUM_2932        384 CGGTTTAGAAGGAAAAGAAAATGCGTATCCGTCTCAGCTTAGCGGCGGAC    433

BSNT_04855___    434 AGAAGCAGCGTGTCGGAATTGCCAGAGCGCTTGCAAACAATCCGAAGGTT    483
                     |.||.||||||||.||.|||||.|||||..|.|||||..||||.||||||
BPUM_2932        434 AAAAACAGCGTGTGGGGATTGCGAGAGCATTAGCAAATGATCCAAAGGTT    483

BSNT_04855___    484 CTCCTTTGTGACGAAGCGACATCAGCATTAGATCCGCAAACGACAGATTC    533
                     ||.||||||||||||||.||.|||||..|.|||||||||||.||.|||||
BPUM_2932        484 CTTCTTTGTGACGAAGCAACGTCAGCGCTTGATCCGCAAACAACGGATTC    533

BSNT_04855___    534 AATTCTGGATCTATTGTCCGATATTAATGAAAGACTCGGTTTGACGATTG    583
                     .||.||.|||||.||..|.|||||.|||.||.||||.||..|||||||||
BPUM_2932        534 TATCCTTGATCTTTTAGCAGATATCAATAAACGACTTGGGCTGACGATTG    583

BSNT_04855___    584 TGCTGATTACGCACGAAATGCATGTCATCCGCAAAATCTG-CAACAGAGT    632
                     ||||||||||.|||||||||||||||||.||||||||.|| ||.| |.||
BPUM_2932        584 TGCTGATTACACACGAAATGCATGTCATTCGCAAAATTTGTCATC-GCGT    632

BSNT_04855___    633 CGCCGTCATGGAAAACG---GCAAGGTGGTCGAAGAAGGCGAGGTTCTCG    679
                     .||.||.|||||.||.|   |||   |.||||||||||||||.||     
BPUM_2932        633 GGCGGTGATGGAGAATGGACGCA---TTGTCGAAGAAGGCGAAGT-----    674

BSNT_04855___    680 AT-----GTCTTCAAAAATCCAAAGGAACAAATGACAAAACGATTTGTTC    724
                     ||     ||.||||.|.|.||.||||||.|||||||.||.|||||.||.|
BPUM_2932        675 ATTACGCGTTTTCAGACAGCCGAAGGAAGAAATGACGAAGCGATTCGTCC    724

BSNT_04855___    725 AGCAGGTGACAGAGCCGGAAGAAACGAAAGAGACGCTTCAGCACCTTCTT    774
                     |||||.|..|.||.||.||.|||.|||||||.||..|..|.|| |.||| 
BPUM_2932        725 AGCAGCTTGCTGAACCAGAGGAAGCGAAAGAAACAATCGAACA-CGTCT-    772

BSNT_04855___    775 GATGATACAGCATCAGG----AAAAATGGTTCAGCTC--ACATTTGTC--    816
                          ||.|||     |    |||.|.|| ||||.||  ||..|||||  
BPUM_2932        773 -----TAGAGC-----GCGTAAAAGAAGG-TCAGGTCGTACGGTTGTCCT    811

BSNT_04855___    817 -----GGTGAGTCAGCTGAACAGCCTCTGATTACAGAGATGATCAGAAAC    861
                          |||||.||.||.||.|||||.||.||.||.||.||.||..||..|
BPUM_2932        812 TTATTGGTGATTCTGCCGAGCAGCCGCTCATCACTGAAATCATTCGATCC    861

BSNT_04855___    862 TTGAATGTCAGCGTCAATATTCTGCAAGGGAAAATTTCGCAGACGAAGGA    911
                     ||.||.|||...||.|||||.||.||||||||.|||||.||.|||.||||
BPUM_2932        862 TTCAAGGTCGATGTAAATATCCTTCAAGGGAAGATTTCTCAAACGCAGGA    911

BSNT_04855___    912 TGGGGCTTACGGTTCACTGTTCATCCACATTGACGGGGACGAGGAAGAAG    961
                     .||.||.|..||..||||.||.|||||.|||.|.||.||.|||...||.|
BPUM_2932        912 AGGCGCGTTTGGAACACTCTTTATCCATATTAATGGAGAAGAGACTGAGG    961

BSNT_04855___    962 TGCAAAACGTGATC-CGTTTCAT-TAATGACAAACAGG-TGAAAGCAGAG   1008
                     |..||||.|..||| |.|.| || .||.| |||||||| ||||| ..|||
BPUM_2932        962 TAGAAAAAGCCATCGCCTAT-ATCCAAAG-CAAACAGGTTGAAA-TTGAG   1008

BSNT_04855___   1009 GTGATCACGAATGTTTGA   1026
                     |||||.||..||||||||
BPUM_2932       1009 GTGATGACACATGTTTGA   1026


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