Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04855 and BPUM_2932
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_04855___yusC.1.24716.seq
# -bsequence dna-align/BPUM_2932.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04855___yusC-BPUM_2932.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04855___yusC-BPUM_2932.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04855___yusC
# 2: BPUM_2932
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity: 745/1068 (69.8%)
# Similarity: 745/1068 (69.8%)
# Gaps: 84/1068 ( 7.9%)
# Score: 2451.5
#
#
#=======================================
BSNT_04855___ 1 TTGATCAATCTTCAGGATGTTTCAAAAGTTTACAAATCGAAACATGGAGA 50
.|||||.||.|.|||.||||.||||||...||..|.||.|||...|||.|
BPUM_2932 1 GTGATCCATTTACAGAATGTATCAAAAACGTATCATTCAAAAAGCGGAAA 50
BSNT_04855___ 51 TGTCAATGCTGTCCAAAATGTC----TCGCTTTCCATTAAAAAAGGTGAG 96
|||..||||.||..||.|.||| |.|.| |||...||||||||.
BPUM_2932 51 TGTTGATGCCGTGAAAGACGTCAACTTGGAT----ATTGGTAAAGGTGAA 96
BSNT_04855___ 97 ATTTTTGGAATTATAGGATATAGCGGAGCTGGTAAGAGTTCCTTAATCCG 146
||.||.||||||||.||.||||||||.||.||.||.||.||..|.||.||
BPUM_2932 97 ATATTCGGAATTATTGGGTATAGCGGTGCCGGAAAAAGCTCGCTGATTCG 146
BSNT_04855___ 147 TCTGCTGAACGGCCTTGAGAAACCAACCTCAGGAACCGTGGAAGTGGC-G 195
.||..|.|||||.||.|||...|||||...|||||..||.|||||||| |
BPUM_2932 147 CCTATTAAACGGTCTGGAGCTGCCAACAGAAGGAATTGTTGAAGTGGCAG 196
BSNT_04855___ 196 GGAACCAAGATTAATGAAGTA---AATGGACG------CGGTTTAAGAAA 236
|.|||| .|||.||||||||| |||| || ||| ||
BPUM_2932 197 GCAACC-GGATCAATGAAGTATCGAATG--CGAAACTTCGG-------AA 236
BSNT_04855___ 237 AGCACGCCATGAGATCAGTATGATTTTCCAGCATTTCAATTTGCTTTGGT 286
||||.|.||.||.|||||.||||||||||||||.||.||..|.|||||||
BPUM_2932 237 AGCAAGACAAGAAATCAGCATGATTTTCCAGCACTTTAACCTACTTTGGT 286
BSNT_04855___ 287 CGCGGACTGTCAGAGATAATATCATGTTTCCTTTGGAAATTGCCGGGGT- 335
|..|.||.||.|||.|.|||||.|||||.||..|.||.||.||.||.||
BPUM_2932 287 CAAGAACAGTGAGACAAAATATTATGTTCCCACTTGAGATCGCAGGTGTA 336
BSNT_04855___ 336 --GAAAAAGAGCGAGCGGATCAAGCGCGCCAATGAACTGATTAAACTGGT 383
||.|..|| |.||||...||||.||.|||||||||||||||.|.||
BPUM_2932 337 CCGACATCGA---AACGGAGAGAGCGTGCGAATGAACTGATTAAATTAGT 383
BSNT_04855___ 384 AGGTTTAGAAGGAAAAGAAAAATCTTATCCATCTCAACTGAGCGGCGGTC 433
.||||||||||||||||||||..|.|||||.|||||.||.||||||||.|
BPUM_2932 384 CGGTTTAGAAGGAAAAGAAAATGCGTATCCGTCTCAGCTTAGCGGCGGAC 433
BSNT_04855___ 434 AGAAGCAGCGTGTCGGAATTGCCAGAGCGCTTGCAAACAATCCGAAGGTT 483
|.||.||||||||.||.|||||.|||||..|.|||||..||||.||||||
BPUM_2932 434 AAAAACAGCGTGTGGGGATTGCGAGAGCATTAGCAAATGATCCAAAGGTT 483
BSNT_04855___ 484 CTCCTTTGTGACGAAGCGACATCAGCATTAGATCCGCAAACGACAGATTC 533
||.||||||||||||||.||.|||||..|.|||||||||||.||.|||||
BPUM_2932 484 CTTCTTTGTGACGAAGCAACGTCAGCGCTTGATCCGCAAACAACGGATTC 533
BSNT_04855___ 534 AATTCTGGATCTATTGTCCGATATTAATGAAAGACTCGGTTTGACGATTG 583
.||.||.|||||.||..|.|||||.|||.||.||||.||..|||||||||
BPUM_2932 534 TATCCTTGATCTTTTAGCAGATATCAATAAACGACTTGGGCTGACGATTG 583
BSNT_04855___ 584 TGCTGATTACGCACGAAATGCATGTCATCCGCAAAATCTG-CAACAGAGT 632
||||||||||.|||||||||||||||||.||||||||.|| ||.| |.||
BPUM_2932 584 TGCTGATTACACACGAAATGCATGTCATTCGCAAAATTTGTCATC-GCGT 632
BSNT_04855___ 633 CGCCGTCATGGAAAACG---GCAAGGTGGTCGAAGAAGGCGAGGTTCTCG 679
.||.||.|||||.||.| ||| |.||||||||||||||.||
BPUM_2932 633 GGCGGTGATGGAGAATGGACGCA---TTGTCGAAGAAGGCGAAGT----- 674
BSNT_04855___ 680 AT-----GTCTTCAAAAATCCAAAGGAACAAATGACAAAACGATTTGTTC 724
|| ||.||||.|.|.||.||||||.|||||||.||.|||||.||.|
BPUM_2932 675 ATTACGCGTTTTCAGACAGCCGAAGGAAGAAATGACGAAGCGATTCGTCC 724
BSNT_04855___ 725 AGCAGGTGACAGAGCCGGAAGAAACGAAAGAGACGCTTCAGCACCTTCTT 774
|||||.|..|.||.||.||.|||.|||||||.||..|..|.|| |.|||
BPUM_2932 725 AGCAGCTTGCTGAACCAGAGGAAGCGAAAGAAACAATCGAACA-CGTCT- 772
BSNT_04855___ 775 GATGATACAGCATCAGG----AAAAATGGTTCAGCTC--ACATTTGTC-- 816
||.||| | |||.|.|| ||||.|| ||..|||||
BPUM_2932 773 -----TAGAGC-----GCGTAAAAGAAGG-TCAGGTCGTACGGTTGTCCT 811
BSNT_04855___ 817 -----GGTGAGTCAGCTGAACAGCCTCTGATTACAGAGATGATCAGAAAC 861
|||||.||.||.||.|||||.||.||.||.||.||.||..||..|
BPUM_2932 812 TTATTGGTGATTCTGCCGAGCAGCCGCTCATCACTGAAATCATTCGATCC 861
BSNT_04855___ 862 TTGAATGTCAGCGTCAATATTCTGCAAGGGAAAATTTCGCAGACGAAGGA 911
||.||.|||...||.|||||.||.||||||||.|||||.||.|||.||||
BPUM_2932 862 TTCAAGGTCGATGTAAATATCCTTCAAGGGAAGATTTCTCAAACGCAGGA 911
BSNT_04855___ 912 TGGGGCTTACGGTTCACTGTTCATCCACATTGACGGGGACGAGGAAGAAG 961
.||.||.|..||..||||.||.|||||.|||.|.||.||.|||...||.|
BPUM_2932 912 AGGCGCGTTTGGAACACTCTTTATCCATATTAATGGAGAAGAGACTGAGG 961
BSNT_04855___ 962 TGCAAAACGTGATC-CGTTTCAT-TAATGACAAACAGG-TGAAAGCAGAG 1008
|..||||.|..||| |.|.| || .||.| |||||||| ||||| ..|||
BPUM_2932 962 TAGAAAAAGCCATCGCCTAT-ATCCAAAG-CAAACAGGTTGAAA-TTGAG 1008
BSNT_04855___ 1009 GTGATCACGAATGTTTGA 1026
|||||.||..||||||||
BPUM_2932 1009 GTGATGACACATGTTTGA 1026
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