Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01403 and BPUM_2911
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01403___yfiY.1.24716.seq
# -bsequence dna-align/BPUM_2911.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01403___yfiY-BPUM_2911.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01403___yfiY-BPUM_2911.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01403___yfiY
# 2: BPUM_2911
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1094
# Identity: 615/1094 (56.2%)
# Similarity: 615/1094 (56.2%)
# Gaps: 256/1094 (23.4%)
# Score: 1418.5
#
#
#=======================================
BSNT_01403___ 1 ATG----AAAAAGCATATCAGCAT-GCTATTCGTATTTTTAATGGCCTTT 45
||| |||||.|.|.|..| | ||||||.|| ||..||.|
BPUM_2911 1 ATGTTCAAAAAATCTTTTTGG--TCGCTATTAGT--------TGTGCTCT 40
BSNT_01403___ 46 --ATGG---TACTTTCTGC------CTGTAATAGTTCA--GAAAGTTCAA 82
||.| |||||.|.|| |.|.||||| || |||.| |||
BPUM_2911 41 CCATCGTTTTACTTGCAGCTTGCGGCAGCAATAG--CAATGAAGG--CAA 86
BSNT_01403___ 83 G--CAACAGCGAGGGGTCAAGCAGCAAAACAAGAACGGTCAAACATGCAA 130
| .||.| ||.|||.| |||||||||||.||..||...||.|
BPUM_2911 87 GTCAAATA-------GTAAAGAA--AAAACAAGAACCGTTGAAAGCGCTA 127
BSNT_01403___ 131 TGGGGACATCAGACAACATTCCCGCCAAT----------CCAAAACGGAT 170
|.||..||.|.|| ||| ||.|||||
BPUM_2911 128 TCGGTTCAACTGA-------------AATTAAAGGATCGCCTAAACG--- 161
BSNT_01403___ 171 TGTTGT-----TTTAACAAATGAAGGAACAGAGGC-GC--TCTTAGCGCT 212
|||.|| |.||.||| |.||.|||.||.|| || || |||.|
BPUM_2911 162 TGTGGTGACGCTGTACCAA--GGAGCAACCGATGCAGCAGTC---GCGAT 206
BSNT_01403___ 213 TGGCATTAAGCCGGTCGGAGCCGTAAAGTCATG----GAAGGGCGACC-- 256
.||||||||.||.||.||.|..||..|.||||| |||| .|||
BPUM_2911 207 GGGCATTAAACCAGTGGGTGTTGTTGAATCATGGCTAGAAG---CACCTA 253
BSNT_01403___ 257 CGTGGTATGACTATCTGAAAGATGACATGAAAGG-TGTTAAAAACGTCGG 305
| ||||.|.|||.|.|.||||||| |.||||| |||.||||..||.||
BPUM_2911 254 C---GTATAAATATTTAAGAGATGAC-TTAAAGGATGTCAAAATTGTTGG 299
BSNT_01403___ 306 TCTTGAAACGGAACCGAATGTGGAAGCCATCGCAGAATTAAAGCCTGATT 355
.|..|||||..|.||.||..|.||.|..||.|.|.||.|.||.||.||||
BPUM_2911 300 GCAAGAAACACAGCCAAACTTAGAGGAAATTGAAAAACTGAACCCAGATT 349
BSNT_01403___ 356 TGATTATTGGAAACAAAGTGCGCCAGGAAAAAATTTATGATCAGTTAAAT 405
||||.||||.|...|||.|.|||||.||..||||||.|||||||.|.||.
BPUM_2911 350 TGATCATTGCATCAAAAATCCGCCACGAGCAAATTTTTGATCAGCTGAAA 399
BSNT_01403___ 406 GCAATTGCGCCGACTGTTTTCGCTGAATC----------TTTGGCCGGGA 445
|.|||.||.||.||.|||....|.|||.| |||
BPUM_2911 400 GAAATCGCTCCAACGGTTGCAACAGAAACCGTATTCACATTT-------- 441
BSNT_01403___ 446 ACTGGAAGGATAACCTGACTCTATACGCCAACGCGGTG--------AATA 487
||.||||...|||...| ||.| |||| |||.
BPUM_2911 442 -----AAAGATACAGTGAAATT-------AATG-GGTGATGCTTTAAATG 478
BSNT_01403___ 488 AGGCGGACAAAGGCAAGGAAGTCATTGC---CG-ATTTTGATAAACGCGT 533
||...||||||...||.|| ||||| || |.|..|||.|.||.||
BPUM_2911 479 AGCAAGACAAATCAAAAGA----ATTGCTAACGAAGTGGGATGACCGTGT 524
BSNT_01403___ 534 TTCTGA-TTTAAAAAACAAGCTGGGCGACCAGACAAA------CAAAACC 576
..|||| ||.|||.||.|||| ||.||| |||||.|
BPUM_2911 525 CGCTGACTTCAAAGAAAAAGC----------GAAAAAAGATATCAAAAAC 564
BSNT_01403___ 577 ------------GTTTCTGTCGTACGCTTTTTATCCGGTG-AG-TCA--- 609
||.|||||.||...||| |.||| || |||
BPUM_2911 565 TGGCCAATGAGTGTATCTGTAGTGAACTT------CCGTGCAGATCATGC 608
BSNT_01403___ 610 -AGAATCTATTATACCGATTCATTCTCAGGGATTATTTTAGAC-CAGCTT 657
|||||||||.|.|| |..||||.|||||...|||||| || .||||.
BPUM_2911 609 TAGAATCTATCAAAC---TGGATTCGCAGGGTCCATTTTA-ACAGAGCTA 654
BSNT_01403___ 658 GGCTTCAAACGCCCTGAAAAACAAGTGGAGCTGTTTAAGAAACAAAAG-- 705
|||||..||.|.|||.|.|| |||..||||.| |||||
BPUM_2911 655 GGCTTTGAAGGACCTAAGAA-----------TGTCAAAGATA-AAAAGCA 692
BSNT_01403___ 706 -GACCAAT--TTACGTTCTCAACCGACAG-TAAAGAATCTATTCCTGATA 751
||| || |.|| ||.||||| .||||||...|||||..|.|
BPUM_2911 693 AGAC--ATCATAAC-------ACTGACAGACAAAGAAAGCATTCCGCAAA 733
BSNT_01403___ 752 TGGATGCTGATGTGCTGTTTTATTTCACTTATAA--AGCCGATAATGCAA 799
|||||||.||||||.|.|.|||.||||...||.| || |||||.||
BPUM_2911 734 TGGATGCAGATGTGATCTATTACTTCATGGATGATCAG--GATAAAGC-- 779
BSNT_01403___ 800 AGGAAAATGAAAAATGGGC---CAATCAGTGGACAAG-CAGTTCACTATG 845
|| .|||||| ||| .||..|||||||.|| || |.|..||||
BPUM_2911 780 -GG---TTGAAAA---GGCTTATAAAGAGTGGACGAGTCA-TCCTTTATG 821
BSNT_01403___ 846 GAAAAACCTAAAGGCCGTGAAGTCAGGTAA-----TGCACATGAAGTCGA 890
|||..|.||..|.||.||||| ||..|| || |||.||||.||
BPUM_2911 822 GAAGCAGCTTGACGCAGTGAA---AGCGAAACAAGTG--CATAAAGTGGA 866
BSNT_01403___ 891 TGACGTCGTATGGACAACCGCAGGCGGAATTAAAGCCGCAAACTACCTGC 940
|||..||...||||..|..|..|||||.||||..||.||||||....|||
BPUM_2911 867 TGAAATCACTTGGAACATGGGTGGCGGTATTATCGCTGCAAACATGATGC 916
BSNT_01403___ 941 TTGATGATATTGAAACCTA----CTTCTTAAAAACG--AAATAA 978
||||||||||| || |.|||...||..| ||||||
BPUM_2911 917 TTGATGATATT------TATGATCGTCTCGGAATTGATAAATAA 954
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