Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01406 and BPUM_2910

See Amino acid alignment / Visit BSNT_01406 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:59
# Commandline: needle
#    -asequence dna-align/BSNT_01406___yfiZ.1.24716.seq
#    -bsequence dna-align/BPUM_2910.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01406___yfiZ-BPUM_2910.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01406___yfiZ-BPUM_2910.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01406___yfiZ
# 2: BPUM_2910
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1141
# Identity:     645/1141 (56.5%)
# Similarity:   645/1141 (56.5%)
# Gaps:         263/1141 (23.0%)
# Score: 1471.5
# 
#
#=======================================

BSNT_01406___      1 ATGA------TCTGCAAAAAGGCATCTTCAA--AA---------------     27
                     ||||      |.|..|||||   |..|||.|  ||               
BPUM_2910          1 ATGAGAAGTTTATTAAAAAA---AGATTCGAGCAAGGCGCTGCTTTTTGC     47

BSNT_01406___     28 TGGATT-GTGTTAGT-ATGTCTGATTTTCATTTTA--CTGGCGGC---TG     70
                     |||||| ||..||.| |||| ||.|.||  |||||  ||  |.||   |.
BPUM_2910         48 TGGATTCGTCGTATTGATGT-TGGTCTT--TTTTATGCT--CAGCATTTC     92

BSNT_01406___     71 TC-TGCGCAAGCGTCGTGTACGGCTATACAGGTACGTCATGGAGACAGGT    119
                     || ||.||||.|.|||             |..|.|.|||  .||.||   
BPUM_2910         93 TCTTGGGCAAACCTCG-------------ATTTCCCTCA--AAGCCA---    124

BSNT_01406___    120 CTAT-CAGGCGTTTACTTCCTT------CAACGGAACAAATGAG---CA-    158
                     |.|| ||.|||||| ||||.||      .|.||||.|.||..||   || 
BPUM_2910        125 CCATCCATGCGTTT-CTTCATTTTGATGAATCGGATCCAAACAGTGTCAT    173

BSNT_01406___    159 TGTCAT--CATCAAGGATGTCAGGCTTCCGCGCGCTTTGGTTGCCACAGT    206
                     ||||||  ||||.||..|.|||        .|.|||||..||||.||.||
BPUM_2910        174 TGTCATGACATCCAGATTATCA--------AGAGCTTTAATTGCAACGGT    215

BSNT_01406___    207 TGTCGG----CGCCTCGCTTGCAGCCGCGGGCGCCCTCATGCAGGCGCTT    252
                     |||.||    .|.||.||   || .|.|.||.||..|.||||||||..|.
BPUM_2910        216 TGTTGGATCAAGTCTAGC---CA-TCTCAGGTGCATTGATGCAGGCATTA    261

BSNT_01406___    253 ACAAAAAATCCGCTTGCGTCACCGGGCATT--TTCGGGATTAACGCCGGT    300
                     ||.|.|||||||||||||.|.||.|  |||  ||.||.|||||.||.|||
BPUM_2910        262 ACGAGAAATCCGCTTGCGGCGCCAG--ATTTGTTAGGAATTAATGCAGGT    309

BSNT_01406___    301 GCAGGTTTTTTTATTG---------TTGCCGGATCGTTTTTTCTGCATAT    341
                     |.|...||||||||.|         |||     ||.|.|||||..||.|.
BPUM_2910        310 GGACTATTTTTTATCGTCATTTCAATTG-----TCTTCTTTTCAACAGAG    354

BSNT_01406___    342 TCAGTCACCTCAGGCATTAGTATGGAGCTCGTTTCTGGGGGCAGCATTTA    391
                     |||.|.|   |||||..|| |.||||...|.|||.|.||.||.|||.|| 
BPUM_2910        355 TCATTAA---CAGGCTATA-TGTGGACAGCCTTTTTAGGTGCGGCAATT-    399

BSNT_01406___    392 CCGCTGCGATCG--------TC-TATGCAGCAGGCTCGCTTGGAAGAGAA    432
                       ||.|.||| |        || |.||     |||||..||||||||||.
BPUM_2910        400 --GCAGGGAT-GCTTGTTTTTCTTTTG-----GGCTCCATTGGAAGAGAT    441

BSNT_01406___    433 GGACTGACGCCAATC-AAACTGACGCTGGCGGGAGCTGCCATGGCAGCCA    481
                     |||.||||.||..|| |||.||.| ||.||.||.||.||.||..|.||..
BPUM_2910        442 GGATTGACACCGGTCAAAATTGTC-CTTGCAGGTGCGGCGATATCTGCAC    490

BSNT_01406___    482 TGTTTTCTTCTCTGACACAAGGCTTGCTTT---CTGTCAACGAAC--TCG    526
                     |||||.|.|||.|.||||||||   .||||   .|||.||.||||  ||.
BPUM_2910        491 TGTTTGCGTCTTTTACACAAGG---TCTTTTGATTGTAAATGAACAATCA    537

BSNT_01406___    527 AGCTTGCCCAGG--TGCTTTTTTGGCTGACTGGCTCTGTGCAGGGCCGGA    574
                     |  ||  |.|.|  |.||.||.|||.||.|.||.||.|||...||..|.|
BPUM_2910        538 A--TT--CAAAGCATTCTGTTCTGGATGGCGGGTTCAGTGTCTGGTAGAA    583

BSNT_01406___    575 GTCTGGATCTGTTGATGACGATGTTT--CCATAT------GCAGCGGCAG    616
                     |..|.|||.||.||.|  |..|||||  ||.|||      |..|||.|||
BPUM_2910        584 GCATTGATATGCTGCT--CCCTGTTTTGCCTTATATTTTAGGTGCGACAG    631

BSNT_01406___    617 CGCTGGTAATCTGCTTCTTTCTCGGCCAAAAAATTAAC-CTCC-------    658
                     ...|||  ..|||||||||    ||           || ||||       
BPUM_2910        632 TTGTGG--CGCTGCTTCTT----GG-----------ACGCTCCATCAATG    664

BSNT_01406___    659 TCGTTATG---GGAGAAGATGTGGCAAAAGGACTCGGCCAAAAAACGGGC    705
                     ||.||.||   |||||.|||.|.||.||.|||||.||.|||...|||...
BPUM_2910        665 TCCTTTTGTCAGGAGATGATATTGCGAAGGGACTTGGTCAACGTACGCTG    714

BSNT_01406___    706 CTGCTGAAATTTGTGATGGCGCTTTGT-GTTGTCATGCTTGCAGGGT---    751
                     .||||||||.|...||||| |..||.| ||.|||.|..|.|| ||||   
BPUM_2910        715 ATGCTGAAAATCACGATGG-GAGTTCTCGTCGTCTTTTTAGC-GGGTGGC    762

BSNT_01406___    752 ----CCGCTGTCG------CCATTGCCGGGCCGATTTCTT--TTATCGGC    789
                         .||||||||      |.||||       |||||.||  ||.||   
BPUM_2910        763 TCCGTCGCTGTCGCAGGATCGATTG-------GATTTGTTGGTTTTC---    802

BSNT_01406___    790 ATCATTA-TTCCGCATTTTGCCCGCT--------TTGTCGTTGGTAATGA    830
                          || |.||||||.|||     |        |||||   ||...|||
BPUM_2910        803 -----TAGTGCCGCATATTG-----TGAAAAAGCTTGTC---GGACCTGA    839

BSNT_01406___    831 TTATCGCTGGGTTCTGCCATTTTCCGCTGTTTTGGGTGCCA----TTTTG    876
                     ..|.||||||||.|||||.|.||..||.||..|||| |.||    ||||.
BPUM_2910        840 CCACCGCTGGGTACTGCCGTATTGTGCCGTAGTGGG-GGCATCTCTTTTA    888

BSNT_01406___    877 CTTGTTTGCGCGGATATCGGTGCGCGATATATCATTATGCCTCAGGAAGT    926
                     |||||   |||.||..|.|..||.||.|.|.|.||.|||||.||||||||
BPUM_2910        889 CTTGT---CGCAGACCTTGCGGCTCGTTTTTTGATCATGCCGCAGGAAGT    935

BSNT_01406___    927 TCCTGTCGGGGTCATGAC--CGCCATCATCGGAATGCCTGTGTTTGTGTA    974
                     .||..|.||.||||||||  ||..|.||  |||..||||.|.|||||.||
BPUM_2910        936 ACCGATTGGTGTCATGACGGCGGTAGCA--GGAGCGCCTCTATTTGTTTA    983

BSNT_01406___    975 CAT----CGCAA------GAAG---GGGGGCGAAGCTATGA   1002
                     ..|    |||||      ||||   ||.|||.||       
BPUM_2910        984 TCTCGTGCGCAAGGGGTTGAAGACAGGTGGCTAA-------   1017


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