Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01406 and BPUM_2910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01406___yfiZ.1.24716.seq
# -bsequence dna-align/BPUM_2910.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01406___yfiZ-BPUM_2910.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01406___yfiZ-BPUM_2910.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01406___yfiZ
# 2: BPUM_2910
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1141
# Identity: 645/1141 (56.5%)
# Similarity: 645/1141 (56.5%)
# Gaps: 263/1141 (23.0%)
# Score: 1471.5
#
#
#=======================================
BSNT_01406___ 1 ATGA------TCTGCAAAAAGGCATCTTCAA--AA--------------- 27
|||| |.|..||||| |..|||.| ||
BPUM_2910 1 ATGAGAAGTTTATTAAAAAA---AGATTCGAGCAAGGCGCTGCTTTTTGC 47
BSNT_01406___ 28 TGGATT-GTGTTAGT-ATGTCTGATTTTCATTTTA--CTGGCGGC---TG 70
|||||| ||..||.| |||| ||.|.|| ||||| || |.|| |.
BPUM_2910 48 TGGATTCGTCGTATTGATGT-TGGTCTT--TTTTATGCT--CAGCATTTC 92
BSNT_01406___ 71 TC-TGCGCAAGCGTCGTGTACGGCTATACAGGTACGTCATGGAGACAGGT 119
|| ||.||||.|.||| |..|.|.||| .||.||
BPUM_2910 93 TCTTGGGCAAACCTCG-------------ATTTCCCTCA--AAGCCA--- 124
BSNT_01406___ 120 CTAT-CAGGCGTTTACTTCCTT------CAACGGAACAAATGAG---CA- 158
|.|| ||.|||||| ||||.|| .|.||||.|.||..|| ||
BPUM_2910 125 CCATCCATGCGTTT-CTTCATTTTGATGAATCGGATCCAAACAGTGTCAT 173
BSNT_01406___ 159 TGTCAT--CATCAAGGATGTCAGGCTTCCGCGCGCTTTGGTTGCCACAGT 206
|||||| ||||.||..|.||| .|.|||||..||||.||.||
BPUM_2910 174 TGTCATGACATCCAGATTATCA--------AGAGCTTTAATTGCAACGGT 215
BSNT_01406___ 207 TGTCGG----CGCCTCGCTTGCAGCCGCGGGCGCCCTCATGCAGGCGCTT 252
|||.|| .|.||.|| || .|.|.||.||..|.||||||||..|.
BPUM_2910 216 TGTTGGATCAAGTCTAGC---CA-TCTCAGGTGCATTGATGCAGGCATTA 261
BSNT_01406___ 253 ACAAAAAATCCGCTTGCGTCACCGGGCATT--TTCGGGATTAACGCCGGT 300
||.|.|||||||||||||.|.||.| ||| ||.||.|||||.||.|||
BPUM_2910 262 ACGAGAAATCCGCTTGCGGCGCCAG--ATTTGTTAGGAATTAATGCAGGT 309
BSNT_01406___ 301 GCAGGTTTTTTTATTG---------TTGCCGGATCGTTTTTTCTGCATAT 341
|.|...||||||||.| ||| ||.|.|||||..||.|.
BPUM_2910 310 GGACTATTTTTTATCGTCATTTCAATTG-----TCTTCTTTTCAACAGAG 354
BSNT_01406___ 342 TCAGTCACCTCAGGCATTAGTATGGAGCTCGTTTCTGGGGGCAGCATTTA 391
|||.|.| |||||..|| |.||||...|.|||.|.||.||.|||.||
BPUM_2910 355 TCATTAA---CAGGCTATA-TGTGGACAGCCTTTTTAGGTGCGGCAATT- 399
BSNT_01406___ 392 CCGCTGCGATCG--------TC-TATGCAGCAGGCTCGCTTGGAAGAGAA 432
||.|.||| | || |.|| |||||..||||||||||.
BPUM_2910 400 --GCAGGGAT-GCTTGTTTTTCTTTTG-----GGCTCCATTGGAAGAGAT 441
BSNT_01406___ 433 GGACTGACGCCAATC-AAACTGACGCTGGCGGGAGCTGCCATGGCAGCCA 481
|||.||||.||..|| |||.||.| ||.||.||.||.||.||..|.||..
BPUM_2910 442 GGATTGACACCGGTCAAAATTGTC-CTTGCAGGTGCGGCGATATCTGCAC 490
BSNT_01406___ 482 TGTTTTCTTCTCTGACACAAGGCTTGCTTT---CTGTCAACGAAC--TCG 526
|||||.|.|||.|.|||||||| .|||| .|||.||.|||| ||.
BPUM_2910 491 TGTTTGCGTCTTTTACACAAGG---TCTTTTGATTGTAAATGAACAATCA 537
BSNT_01406___ 527 AGCTTGCCCAGG--TGCTTTTTTGGCTGACTGGCTCTGTGCAGGGCCGGA 574
| || |.|.| |.||.||.|||.||.|.||.||.|||...||..|.|
BPUM_2910 538 A--TT--CAAAGCATTCTGTTCTGGATGGCGGGTTCAGTGTCTGGTAGAA 583
BSNT_01406___ 575 GTCTGGATCTGTTGATGACGATGTTT--CCATAT------GCAGCGGCAG 616
|..|.|||.||.||.| |..||||| ||.||| |..|||.|||
BPUM_2910 584 GCATTGATATGCTGCT--CCCTGTTTTGCCTTATATTTTAGGTGCGACAG 631
BSNT_01406___ 617 CGCTGGTAATCTGCTTCTTTCTCGGCCAAAAAATTAAC-CTCC------- 658
...||| ..||||||||| || || ||||
BPUM_2910 632 TTGTGG--CGCTGCTTCTT----GG-----------ACGCTCCATCAATG 664
BSNT_01406___ 659 TCGTTATG---GGAGAAGATGTGGCAAAAGGACTCGGCCAAAAAACGGGC 705
||.||.|| |||||.|||.|.||.||.|||||.||.|||...|||...
BPUM_2910 665 TCCTTTTGTCAGGAGATGATATTGCGAAGGGACTTGGTCAACGTACGCTG 714
BSNT_01406___ 706 CTGCTGAAATTTGTGATGGCGCTTTGT-GTTGTCATGCTTGCAGGGT--- 751
.||||||||.|...||||| |..||.| ||.|||.|..|.|| ||||
BPUM_2910 715 ATGCTGAAAATCACGATGG-GAGTTCTCGTCGTCTTTTTAGC-GGGTGGC 762
BSNT_01406___ 752 ----CCGCTGTCG------CCATTGCCGGGCCGATTTCTT--TTATCGGC 789
.|||||||| |.|||| |||||.|| ||.||
BPUM_2910 763 TCCGTCGCTGTCGCAGGATCGATTG-------GATTTGTTGGTTTTC--- 802
BSNT_01406___ 790 ATCATTA-TTCCGCATTTTGCCCGCT--------TTGTCGTTGGTAATGA 830
|| |.||||||.||| | ||||| ||...|||
BPUM_2910 803 -----TAGTGCCGCATATTG-----TGAAAAAGCTTGTC---GGACCTGA 839
BSNT_01406___ 831 TTATCGCTGGGTTCTGCCATTTTCCGCTGTTTTGGGTGCCA----TTTTG 876
..|.||||||||.|||||.|.||..||.||..|||| |.|| ||||.
BPUM_2910 840 CCACCGCTGGGTACTGCCGTATTGTGCCGTAGTGGG-GGCATCTCTTTTA 888
BSNT_01406___ 877 CTTGTTTGCGCGGATATCGGTGCGCGATATATCATTATGCCTCAGGAAGT 926
||||| |||.||..|.|..||.||.|.|.|.||.|||||.||||||||
BPUM_2910 889 CTTGT---CGCAGACCTTGCGGCTCGTTTTTTGATCATGCCGCAGGAAGT 935
BSNT_01406___ 927 TCCTGTCGGGGTCATGAC--CGCCATCATCGGAATGCCTGTGTTTGTGTA 974
.||..|.||.|||||||| ||..|.|| |||..||||.|.|||||.||
BPUM_2910 936 ACCGATTGGTGTCATGACGGCGGTAGCA--GGAGCGCCTCTATTTGTTTA 983
BSNT_01406___ 975 CAT----CGCAA------GAAG---GGGGGCGAAGCTATGA 1002
..| ||||| |||| ||.|||.||
BPUM_2910 984 TCTCGTGCGCAAGGGGTTGAAGACAGGTGGCTAA------- 1017
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