Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01407 and BPUM_2909
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_01407___yfhA.1.24716.seq
# -bsequence dna-align/BPUM_2909.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01407___yfhA-BPUM_2909.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01407___yfhA-BPUM_2909.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01407___yfhA
# 2: BPUM_2909
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1234
# Identity: 631/1234 (51.1%)
# Similarity: 631/1234 (51.1%)
# Gaps: 398/1234 (32.3%)
# Score: 1368.5
#
#
#=======================================
BSNT_01407___ 1 ----ATGAAACTT----CGTTTTGGCGTT---ACTGCGGCTGAA------ 33
.|.||||.| .|| ||||| |..||||..|.|
BPUM_2909 1 GTGGCTAAAACATATACAGT----GCGTTCAAAGGGCGGGCGCATTTCAT 46
BSNT_01407___ 34 ---AA----GAAAGCATGGATCGTCTTTTTAATTTTACTGGGGTTAACAG 76
|| .||||| ||| || |||||.||||||||....||.||.|
BPUM_2909 47 TTCAATTTTCAAAGC--GGA-CG--TTTTTGATTTTACTTTTATTGACGG 91
BSNT_01407___ 77 C---TGC----------TGTACTCATCATAAGCGCAGGTCTC------GG 107
| ||| |.||.|| ||| ||||| ||
BPUM_2909 92 CCATTGCTTTTGGATTATTTATTC-TCA---------GTCTCTGTATGGG 131
BSNT_01407___ 108 ACAAAGGTTTATTCCTCCCTGGGATGTAGCAAAAACATTCTTTGGTGCA- 156
.....||||||||.|.||...|||||| || ||||| ||
BPUM_2909 132 TAGCCGGTTTATTTCGCCTATGGATGT-GC-------TTCTT-----CAT 168
BSNT_01407___ 157 ------GGTTCCAA--------------------GCTGGATGAACTGATG 180
||| ||| |||..||..|||||
BPUM_2909 169 TTAATCGGT--CAAGGAGAGGGAAATACCTTTGTGCTCAATACACTGA-- 214
BSNT_01407___ 181 ATCATGTCGTTCCGCATGCCAAGAATTTTGACAGCT---TTA-------- 219
|.||.|||||||..|||...||| |||
BPUM_2909 215 -------------GAATTCCAAGAACATTGCTGGCTGTCTTAGTGGGGGC 251
BSNT_01407___ 220 TGCGC---CGGTGTC--TGCTTGGCAGCGGCAGGCGCGATATTGCAGGGG 264
||||| ||||.|| .|||| ||.|||||.||.
BPUM_2909 252 TGCGCTTGCGGTATCAGGGCTT----------------ATTTTGCAAGGA 285
BSNT_01407___ 265 CTCGTCAGAAACCCTCTCGCATCTCCGGATATTATCGGAATAACAGGAGG 314
.|..||.|.||.||.||.|||||.||.||.||.||.||.||.||..|.||
BPUM_2909 286 TTAATCCGCAATCCGCTTGCATCGCCTGACATCATTGGGATTACGAGTGG 335
BSNT_01407___ 315 AGCGGCGGTAGCGGT-CGTGCTTTTAATGATGTT-----CTTCTCAGACC 358
.||..||.| |||| || ||.||||| .||.|..||..
BPUM_2909 336 TGCTTCGTT--CGGTGCG--------ATTATGTTTATTGTTTTTTGGATG 375
BSNT_01407___ 359 GCAGCAGTTCAC---TTACG-ATCAGTCTGTCATG---GCTTCCAGCAGC 401
| |||.|..|| ||.|| ||||.|| .|.||| |.|| ||||.
BPUM_2909 376 G--GCACTGTACCTATTGCGTATCAATC-CTTATGGGCGATT---GCAGG 419
BSNT_01407___ 402 CGCATTTATCGGCGCATCGGCTGTCGGGCTCATCGTC-----TATTTACT 446
.||.||| ||||| |||.| ||| |||||.||
BPUM_2909 420 GGCTTTT------------GCTGT----CTCGT-GTCTGATTTATTTGCT 452
BSNT_01407___ 447 GGCATACAAAAA-----TGGCGCC--TCCACATTTCGGCTGGTGCTGATC 489
..|||..||||| ||..||| | |||| ||.||.||.||.
BPUM_2909 453 TTCATGGAAAAAAGGGGTGAAGCCAAT-CACA------CTTGTCCTAATG 495
BSNT_01407___ 490 GGAATCGGATTTTCAATGTCGGC--GCAGGCG---ATGAC---TACCCT- 530
||.|||||..|||| ||.|..| |.||||| .|||| |||.||
BPUM_2909 496 GGCATCGGGATTTC--TGCCATCATGAAGGCGTGTGTGACGTTTACTCTA 543
BSNT_01407___ 531 GTT-----------GATGA-----TCAAAGGTCCGATTTA--------CC 556
||| ||||| .|||| ||| ||.|| .|
BPUM_2909 544 GTTCTTAGTGATACGATGACGACGACAAA-GTC--ATATATTTGGCTGAC 590
BSNT_01407___ 557 GGGCATCACAAGCCAATGTGTATATCACTGG----------------GTC 590
||||| ||.|||| ||| |||
BPUM_2909 591 GGGCA------------GTTTATA----TGGTTCTACGATGAAGGACGTC 624
BSNT_01407___ 591 A-GTTTATGGGTCAAACTGGCAGCATGTAAAAATAGCTATTATCTTATC- 638
| ||..|||..|| ||.|.|.|||| ||.||.|||.|
BPUM_2909 625 ACGTCGATGCTTC---CTTGGATCATG-----------ATCATTTTACCG 660
BSNT_01407___ 639 --TGTCATTCTCTTATTCATTTGTTTTGTCGCGCTAAAAAATATGAATAT 686
||||||..|.||| || ||.||..||||||.|
BPUM_2909 661 ATTGTCATGGTGTTA-----------------GC-AAGAACGATGAATGT 692
BSNT_01407___ 687 ACAGGTGCTGGGTGAAGATATTGC-----GGC---GGGTGCAGGAAGCGC 728
..|||.|||.||.||.|||.|||| ||| |||||.|
BPUM_2909 693 GAAGGAGCTTGGAGATGATCTTGCCACAGGGCTTGGGGTGAA-------- 734
BSNT_01407___ 729 TGTGCAGCGAAATCGTTTTTTCTTGCTACTTTTGAGTACGGCTCTTACTG 778
.||||||..|||..|..|.|||||.|||||..|||||..|.| |.||
BPUM_2909 735 AGTGCAGGCAAAAAGGCTATTCTTTCTACTGATGAGTGTGAC----ATTG 780
BSNT_01407___ 779 GTTG----TGCAGTTTCAGTTGCCGGCACAATCGGTTTTGTCGGGCTGAT 824
|..| |||.|||.|..||||.|||...||.|..|||||.||.|||||
BPUM_2909 781 GCGGGGATTGCCGTTGCCTTTGCTGGCGGTATTGAATTTGTTGGACTGAT 830
BSNT_01407___ 825 GGCGCCCCATATTGCAAGACGGCTTGTCGGCTCATCTTATGGC------- 867
||||||.|||.|||| ||||.| |.||||| |||
BPUM_2909 831 GGCGCCGCATGTTGC---ACGGAT-----GATCATC----GGCCGTTCCT 868
BSNT_01407___ 868 -----GCGCTGCTCCCAGCGTCGGCACTTATT-GGAG----CTC----TG 903
||||||.|.||.||.||.||.|||.|| |||| ||| ||
BPUM_2909 869 TCATTGCGCTGGTTCCGGCATCTGCGCTTGTTGGGAGCATTCTCGTGATG 918
BSNT_01407___ 904 CTCGTTTTAACAGCTGATATCGTCGGCAGAAC--CTTATTTGCT-CCGGT 950
||| ||.|||.|.||||..||||| | |||.|| ||..|
BPUM_2909 919 CTC---------GCAGATTTAGTCGCTAGAACGGC---TTTTCTACCATT 956
BSNT_01407___ 951 GGAAGTGCCGGCCGGCGTCTTTACAGCGGCTATCGGCGCACCTTATTTTA 1000
.||.||.||.||.||.||.||.|||||.||.||.||.|||||.|..||||
BPUM_2909 957 AGATGTACCAGCAGGTGTATTCACAGCTGCAATTGGGGCACCGTTCTTTA 1006
BSNT_01407___ 1001 TTTATTTGCTCTATA-AAACA-AGAAATTCTTAA 1032
|||||||| .|||| .|.|| ||||||...|||
BPUM_2909 1007 TTTATTTG--TTATACCAGCAGAGAAATCGATAA 1038
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