Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04790 and BPUM_2901
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_04790___yunD.1.24716.seq
# -bsequence dna-align/BPUM_2901___ushA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04790___yunD-BPUM_2901___ushA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04790___yunD-BPUM_2901___ushA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04790___yunD
# 2: BPUM_2901___ushA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1517
# Identity: 921/1517 (60.7%)
# Similarity: 921/1517 (60.7%)
# Gaps: 271/1517 (17.9%)
# Score: 2609.5
#
#
#=======================================
BSNT_04790___ 1 ATGAAGGAGAAGCTCCGCTTATATCATACAAATGATTTGCACAGCCATTT 50
|||..|.|||||||..|..|||||||||||||.||.|||||||||||.||
BPUM_2901___u 1 ATGCTGCAGAAGCTATGGATATATCATACAAACGACTTGCACAGCCACTT 50
BSNT_04790___ 51 TGAAAACTGGCTGAAAATTGTAGATTATATCGAGCAGAAAAGAAAAGAGC 100
|||.|||||||..|||||.|.||.|||||| .|||.||| |||
BPUM_2901___u 51 TGAGAACTGGCCAAAAATCGCAGCTTATAT--------TAAGGAAA-AGC 91
BSNT_04790___ 101 ATC--AGTCAGACGGCGAAGAGACGCTCGTTTTTGATATTGGCGATCATC 148
.|| |.||| |||..|||.||||.|.||||||||||||||.|||.
BPUM_2901___u 92 GTCAAATTCA-----CGATCAGATGCTCTTGTTTGATATTGGCGACCATA 136
BSNT_04790___ 149 T--------TGATCGTTTTCAATTCGTGACAGAGGC-GACATT-CGGAAA 188
| |||.|.|| |||.||||.|| | ||| .|||||
BPUM_2901___u 137 TGGACAGGGTGAACCTT--------GTGTCAGAAGCTG--ATTATGGAAA 176
BSNT_04790___ 189 AGCGAATGTTGATCTCTTAAACCGCCTTCACATTGATGGAGCGGCGATCG 238
.|..||.||..|.||..|.||.|..|||..|..||||||.|...||||.|
BPUM_2901___u 177 GGTAAACGTCAAGCTTCTCAATCAACTTGGCTATGATGGGGTCACGATTG 226
BSNT_04790___ 239 GCAATAACGAAGGGATTACGCTTCCGCATGAAGAGCTTGCTGCCTTATAT 288
|.|||||.|||||.||||||||.||.|||||..||||.|.|...||.||.
BPUM_2901___u 227 GGAATAATGAAGGCATTACGCTGCCTCATGATCAGCTCGATCAATTGTAC 276
BSNT_04790___ 289 GATCATGCTGAATTTCCTGTCATCGTCTCTAACCTGTTTGATAAAAACGG 338
||.|||||..|||||||.||..||.|.|||||..|.|||||.||| ||
BPUM_2901___u 277 GAGCATGCACAATTTCCAGTGGTCCTGTCTAATTTATTTGAGAAA---GG 323
BSNT_04790___ 339 AAACCGTCCGTCCTGGGCGGTGCCTTACCATAT----CAAATCATTGAAA 384
.||..|.||.||.|||||...||||||.||||| |||| ||.||
BPUM_2901___u 324 CAAAAGGCCATCGTGGGCAAAGCCTTATCATATGATCCAAA----TGGAA 369
BSNT_04790___ 385 AACGG--------TATGTCCATTGCTTTCTTAGGTGTAACTGTGCCGTAT 426
||.|| |||||| ||||||||||.||..|..|||||
BPUM_2901___u 370 AATGGACTGAAAATATGTC--------TCTTAGGTGTGACCATTGCGTAT 411
BSNT_04790___ 427 TATCCTGTATATGACAAGCTGGGATGGACAG-TAACGGATGCTCTTGAAA 475
...|||||.|||||.|||||.||.||| .|| |.||.|||.|..||||.|
BPUM_2901___u 412 ACACCTGTCTATGAAAAGCTAGGCTGG-GAGATTACAGATCCGTTTGACA 460
BSNT_04790___ 476 GCATAAAGGAAACCATTCTGGATGTGAAAGGGCAGGCTGATATTATCGTT 525
||||||.|||.|...|.|.|||.|||||.||.||.||.|||.|.||.||.
BPUM_2901___u 461 GCATAAGGGACATGTTGCAGGAAGTGAAGGGACAAGCGGATGTCATTGTG 510
BSNT_04790___ 526 CTGCTGTCACATTTAGGCATTCTTGATGATCAGGCAGTGGCTGAAGCGGT 575
||..|.||.|||.||||.|||||..||||||.||..||.|| |.||
BPUM_2901___u 511 CTCTTATCCCATCTAGGTATTCTCCATGATCGGGAGGTTGC-----CCGT 555
BSNT_04790___ 576 G-----CCTGAGATTGATGTAATCCTCGAATCACATACCCATCATTTGCT 620
| |||||.||.|||.|.||.||.|..||||||||.|||||.|||.|
BPUM_2901___u 556 GATTTTCCTGACATCGATATGATTCTAGGTTCACATACGCATCACTTGTT 605
BSNT_04790___ 621 TGAAGATGGACAAGTGGTGAATGGGGTACTGCTGGCCAGCGCCGAGAAAT 670
.|||.|.||..||.|||..|||||.||.|||||.||..||||.||.||.|
BPUM_2901___u 606 AGAACAGGGTGAAATGGACAATGGAGTGCTGCTTGCATGCGCTGAAAAGT 655
BSNT_04790___ 671 ACGGGCATTATGTCGGCTGTGTAGAAATCACGGTGGACAGCGTACAGCGA 720
|.|||||||||.|.||||||||.||..|.||..|.|| |||||| |
BPUM_2901___u 656 ATGGGCATTATATTGGCTGTGTCGAGCTGACCATTGA-----TACAGC-A 699
BSNT_04790___ 721 AGCA------TCATC-AGCAAAACGGCTTCTGTGCAGAACATGGCGGAAT 763
|||| |.||| || ||||..||..|.|||||| ..|.|
BPUM_2901___u 700 AGCAAAGAGTTAATCGAG-AAAAAAGCAACGGTGCAG--------TCAGT 740
BSNT_04790___ 764 GGA-CAG-------GAGAATCCGCAGAA--------------ACAA-AAG 790
||| ||| |.|||||.|..||| |||| |||
BPUM_2901___u 741 GGATCAGCTGATCAGTGAATCAGATGAAGCGATCACTACCTTACAACAAG 790
BSNT_04790___ 791 CGTTTCTCAATGAAAAAGAACGAGAAG-CCGAGGAGAAGCTGTCCGATGC 839
| ||| |||||| .||| ||||..|| ||||
BPUM_2901___u 791 C---------------AGA--GAGAAGAGCGA----AAGCCCTC--ATGC 817
BSNT_04790___ 840 -------CGTTGCAGAGCTTG---CACA---AGATGCTGAGGTGAAGTGG 876
.||..|||||.||| ||.| |||..| |||||||
BPUM_2901___u 818 AGGAAAAAGTAACAGAGATTGAGTCAAAATTAGAAAC------GAAGTGG 861
BSNT_04790___ 877 TTTGAAGAATCAGAGCTGCCTTTGCTTTTGGCATACGCC-TTAAAGGAAT 925
|||||.|.|||...|||.||...|||.||..||.|.||| ||||| ||.|
BPUM_2901___u 862 TTTGATGCATCTCCGCTTCCGCAGCTCTTAACAGATGCCATTAAA-GATT 910
BSNT_04790___ 926 GGTGCGAGA-CGGACATCAGTATGGTCAATTCAGGTGTCATTCTCGGTCC 974
|||||| || |.||.||..|.|||.|.|||.||||..|..|.||.|.|.|
BPUM_2901___u 911 GGTGCG-GAGCAGATATTGGCATGATGAATGCAGGAATGGTGCTGGATTC 959
BSNT_04790___ 975 GCTAAAAGCAGGTCCTGTGACAA-AGCTGGA-TCTGCACCGCATCTGTCC 1022
..||.|||||||...|||||||| ||..|.| || |||||.|||||.||
BPUM_2901___u 960 ATTAGAAGCAGGAATTGTGACAAGAGAAGAAGTC--CACCGAATCTGCCC 1007
BSNT_04790___ 1023 GCATCCGATCAACCCGGTGGCTGTCCGCCTGACG------GGAGAAGAAT 1066
.|||||.||.|||| ||.|.||..||||| ||..||.|..
BPUM_2901___u 1008 ACATCCCATTAACC------CTATTCGTGTGACGCTTACCGGTCAACAGC 1051
BSNT_04790___ 1067 TGAAGGAAACCATT----GTCCATGCCGCTTCCGAACAAATGGAGCAGCT 1112
|.|..||||||.|| ||.|||| |...|||.|||||||.|||||
BPUM_2901___u 1052 TCATCGAAACCGTTCGGCGTGCATG----TGAAGAAAAAATGGAACAGCT 1097
BSNT_04790___ 1113 CCGGATCAAAGGACTTGGCTTCCGCGGAGAAGTGATGGGGAAAATGGTGT 1162
.||.|||||.||..|||||||..|.||.|||.||||||||||||||.|||
BPUM_2901___u 1098 GCGCATCAAGGGCTTTGGCTTTAGAGGGGAACTGATGGGGAAAATGCTGT 1147
BSNT_04790___ 1163 ATGCCGGCGTT---------------GAGGTAGAAACGAAACGGCTCGAT 1197
||..||||.|| ||.|.||||||.||||||.|..|.
BPUM_2901___u 1148 ATAGCGGCCTTACTTATACAGTAGAAGAAGGAGAAACCAAACGGGTGAAG 1197
BSNT_04790___ 1198 GACG-------GGATCACCCACGTCACCCGGATCACACTGAACGGGGAAG 1240
||.| |.|| ||||| |.|||.|
BPUM_2901___u 1198 GATGTTTTTGTGCAT---------------GATCA-ATTGATC------- 1224
BSNT_04790___ 1241 ATATTAAAAA----ACATAAACAATACTCCGTTGCGGTGC----TTGATA 1282
|.||||.| .|.||.||.| ||| || |.||||
BPUM_2901___u 1225 --AATAAAGACGCTTCCTATACGA-------TTG----GCACAGTCGATA 1261
BSNT_04790___ 1283 TGTTTACGCTCGGCAAACTGTTTCCGTTGATTCGCGATGCTGCAGAAAAA 1332
|||.|||..|.|||...||.|||||....|||||.||...||.|.|.|..
BPUM_2901___u 1262 TGTATACATTAGGCTCTCTATTTCCTCATATTCGTGACCATGAACACATT 1311
BSNT_04790___ 1333 GAATATTTTATGCCGGAATTTTTGCGGGATCTGCTTGCTT---------- 1372
||||||||.||||||||||||||.||.|||.|.|||.|||
BPUM_2901___u 1312 GAATATTTCATGCCGGAATTTTTACGTGATGTCCTTACTTGGCGTCTGAA 1361
BSNT_04790___ 1373 GGAAGCTTGCACAATAA 1389
|||||| ||||..|
BPUM_2901___u 1362 GGAAGC---CACATGA- 1374
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