Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04790 and BPUM_2901

See Amino acid alignment / Visit BSNT_04790 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_04790___yunD.1.24716.seq
#    -bsequence dna-align/BPUM_2901___ushA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04790___yunD-BPUM_2901___ushA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04790___yunD-BPUM_2901___ushA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04790___yunD
# 2: BPUM_2901___ushA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1517
# Identity:     921/1517 (60.7%)
# Similarity:   921/1517 (60.7%)
# Gaps:         271/1517 (17.9%)
# Score: 2609.5
# 
#
#=======================================

BSNT_04790___      1 ATGAAGGAGAAGCTCCGCTTATATCATACAAATGATTTGCACAGCCATTT     50
                     |||..|.|||||||..|..|||||||||||||.||.|||||||||||.||
BPUM_2901___u      1 ATGCTGCAGAAGCTATGGATATATCATACAAACGACTTGCACAGCCACTT     50

BSNT_04790___     51 TGAAAACTGGCTGAAAATTGTAGATTATATCGAGCAGAAAAGAAAAGAGC    100
                     |||.|||||||..|||||.|.||.||||||        .|||.||| |||
BPUM_2901___u     51 TGAGAACTGGCCAAAAATCGCAGCTTATAT--------TAAGGAAA-AGC     91

BSNT_04790___    101 ATC--AGTCAGACGGCGAAGAGACGCTCGTTTTTGATATTGGCGATCATC    148
                     .||  |.|||     |||..|||.||||.|.||||||||||||||.|||.
BPUM_2901___u     92 GTCAAATTCA-----CGATCAGATGCTCTTGTTTGATATTGGCGACCATA    136

BSNT_04790___    149 T--------TGATCGTTTTCAATTCGTGACAGAGGC-GACATT-CGGAAA    188
                     |        |||.|.||        |||.||||.|| |  ||| .|||||
BPUM_2901___u    137 TGGACAGGGTGAACCTT--------GTGTCAGAAGCTG--ATTATGGAAA    176

BSNT_04790___    189 AGCGAATGTTGATCTCTTAAACCGCCTTCACATTGATGGAGCGGCGATCG    238
                     .|..||.||..|.||..|.||.|..|||..|..||||||.|...||||.|
BPUM_2901___u    177 GGTAAACGTCAAGCTTCTCAATCAACTTGGCTATGATGGGGTCACGATTG    226

BSNT_04790___    239 GCAATAACGAAGGGATTACGCTTCCGCATGAAGAGCTTGCTGCCTTATAT    288
                     |.|||||.|||||.||||||||.||.|||||..||||.|.|...||.||.
BPUM_2901___u    227 GGAATAATGAAGGCATTACGCTGCCTCATGATCAGCTCGATCAATTGTAC    276

BSNT_04790___    289 GATCATGCTGAATTTCCTGTCATCGTCTCTAACCTGTTTGATAAAAACGG    338
                     ||.|||||..|||||||.||..||.|.|||||..|.|||||.|||   ||
BPUM_2901___u    277 GAGCATGCACAATTTCCAGTGGTCCTGTCTAATTTATTTGAGAAA---GG    323

BSNT_04790___    339 AAACCGTCCGTCCTGGGCGGTGCCTTACCATAT----CAAATCATTGAAA    384
                     .||..|.||.||.|||||...||||||.|||||    ||||    ||.||
BPUM_2901___u    324 CAAAAGGCCATCGTGGGCAAAGCCTTATCATATGATCCAAA----TGGAA    369

BSNT_04790___    385 AACGG--------TATGTCCATTGCTTTCTTAGGTGTAACTGTGCCGTAT    426
                     ||.||        ||||||        ||||||||||.||..|..|||||
BPUM_2901___u    370 AATGGACTGAAAATATGTC--------TCTTAGGTGTGACCATTGCGTAT    411

BSNT_04790___    427 TATCCTGTATATGACAAGCTGGGATGGACAG-TAACGGATGCTCTTGAAA    475
                     ...|||||.|||||.|||||.||.||| .|| |.||.|||.|..||||.|
BPUM_2901___u    412 ACACCTGTCTATGAAAAGCTAGGCTGG-GAGATTACAGATCCGTTTGACA    460

BSNT_04790___    476 GCATAAAGGAAACCATTCTGGATGTGAAAGGGCAGGCTGATATTATCGTT    525
                     ||||||.|||.|...|.|.|||.|||||.||.||.||.|||.|.||.||.
BPUM_2901___u    461 GCATAAGGGACATGTTGCAGGAAGTGAAGGGACAAGCGGATGTCATTGTG    510

BSNT_04790___    526 CTGCTGTCACATTTAGGCATTCTTGATGATCAGGCAGTGGCTGAAGCGGT    575
                     ||..|.||.|||.||||.|||||..||||||.||..||.||     |.||
BPUM_2901___u    511 CTCTTATCCCATCTAGGTATTCTCCATGATCGGGAGGTTGC-----CCGT    555

BSNT_04790___    576 G-----CCTGAGATTGATGTAATCCTCGAATCACATACCCATCATTTGCT    620
                     |     |||||.||.|||.|.||.||.|..||||||||.|||||.|||.|
BPUM_2901___u    556 GATTTTCCTGACATCGATATGATTCTAGGTTCACATACGCATCACTTGTT    605

BSNT_04790___    621 TGAAGATGGACAAGTGGTGAATGGGGTACTGCTGGCCAGCGCCGAGAAAT    670
                     .|||.|.||..||.|||..|||||.||.|||||.||..||||.||.||.|
BPUM_2901___u    606 AGAACAGGGTGAAATGGACAATGGAGTGCTGCTTGCATGCGCTGAAAAGT    655

BSNT_04790___    671 ACGGGCATTATGTCGGCTGTGTAGAAATCACGGTGGACAGCGTACAGCGA    720
                     |.|||||||||.|.||||||||.||..|.||..|.||     |||||| |
BPUM_2901___u    656 ATGGGCATTATATTGGCTGTGTCGAGCTGACCATTGA-----TACAGC-A    699

BSNT_04790___    721 AGCA------TCATC-AGCAAAACGGCTTCTGTGCAGAACATGGCGGAAT    763
                     ||||      |.||| || ||||..||..|.||||||        ..|.|
BPUM_2901___u    700 AGCAAAGAGTTAATCGAG-AAAAAAGCAACGGTGCAG--------TCAGT    740

BSNT_04790___    764 GGA-CAG-------GAGAATCCGCAGAA--------------ACAA-AAG    790
                     ||| |||       |.|||||.|..|||              |||| |||
BPUM_2901___u    741 GGATCAGCTGATCAGTGAATCAGATGAAGCGATCACTACCTTACAACAAG    790

BSNT_04790___    791 CGTTTCTCAATGAAAAAGAACGAGAAG-CCGAGGAGAAGCTGTCCGATGC    839
                     |               |||  |||||| .|||    ||||..||  ||||
BPUM_2901___u    791 C---------------AGA--GAGAAGAGCGA----AAGCCCTC--ATGC    817

BSNT_04790___    840 -------CGTTGCAGAGCTTG---CACA---AGATGCTGAGGTGAAGTGG    876
                            .||..|||||.|||   ||.|   |||..|      |||||||
BPUM_2901___u    818 AGGAAAAAGTAACAGAGATTGAGTCAAAATTAGAAAC------GAAGTGG    861

BSNT_04790___    877 TTTGAAGAATCAGAGCTGCCTTTGCTTTTGGCATACGCC-TTAAAGGAAT    925
                     |||||.|.|||...|||.||...|||.||..||.|.||| ||||| ||.|
BPUM_2901___u    862 TTTGATGCATCTCCGCTTCCGCAGCTCTTAACAGATGCCATTAAA-GATT    910

BSNT_04790___    926 GGTGCGAGA-CGGACATCAGTATGGTCAATTCAGGTGTCATTCTCGGTCC    974
                     |||||| || |.||.||..|.|||.|.|||.||||..|..|.||.|.|.|
BPUM_2901___u    911 GGTGCG-GAGCAGATATTGGCATGATGAATGCAGGAATGGTGCTGGATTC    959

BSNT_04790___    975 GCTAAAAGCAGGTCCTGTGACAA-AGCTGGA-TCTGCACCGCATCTGTCC   1022
                     ..||.|||||||...|||||||| ||..|.| ||  |||||.|||||.||
BPUM_2901___u    960 ATTAGAAGCAGGAATTGTGACAAGAGAAGAAGTC--CACCGAATCTGCCC   1007

BSNT_04790___   1023 GCATCCGATCAACCCGGTGGCTGTCCGCCTGACG------GGAGAAGAAT   1066
                     .|||||.||.||||      ||.|.||..|||||      ||..||.|..
BPUM_2901___u   1008 ACATCCCATTAACC------CTATTCGTGTGACGCTTACCGGTCAACAGC   1051

BSNT_04790___   1067 TGAAGGAAACCATT----GTCCATGCCGCTTCCGAACAAATGGAGCAGCT   1112
                     |.|..||||||.||    ||.||||    |...|||.|||||||.|||||
BPUM_2901___u   1052 TCATCGAAACCGTTCGGCGTGCATG----TGAAGAAAAAATGGAACAGCT   1097

BSNT_04790___   1113 CCGGATCAAAGGACTTGGCTTCCGCGGAGAAGTGATGGGGAAAATGGTGT   1162
                     .||.|||||.||..|||||||..|.||.|||.||||||||||||||.|||
BPUM_2901___u   1098 GCGCATCAAGGGCTTTGGCTTTAGAGGGGAACTGATGGGGAAAATGCTGT   1147

BSNT_04790___   1163 ATGCCGGCGTT---------------GAGGTAGAAACGAAACGGCTCGAT   1197
                     ||..||||.||               ||.|.||||||.||||||.|..|.
BPUM_2901___u   1148 ATAGCGGCCTTACTTATACAGTAGAAGAAGGAGAAACCAAACGGGTGAAG   1197

BSNT_04790___   1198 GACG-------GGATCACCCACGTCACCCGGATCACACTGAACGGGGAAG   1240
                     ||.|       |.||               ||||| |.|||.|       
BPUM_2901___u   1198 GATGTTTTTGTGCAT---------------GATCA-ATTGATC-------   1224

BSNT_04790___   1241 ATATTAAAAA----ACATAAACAATACTCCGTTGCGGTGC----TTGATA   1282
                       |.||||.|    .|.||.||.|       |||    ||    |.||||
BPUM_2901___u   1225 --AATAAAGACGCTTCCTATACGA-------TTG----GCACAGTCGATA   1261

BSNT_04790___   1283 TGTTTACGCTCGGCAAACTGTTTCCGTTGATTCGCGATGCTGCAGAAAAA   1332
                     |||.|||..|.|||...||.|||||....|||||.||...||.|.|.|..
BPUM_2901___u   1262 TGTATACATTAGGCTCTCTATTTCCTCATATTCGTGACCATGAACACATT   1311

BSNT_04790___   1333 GAATATTTTATGCCGGAATTTTTGCGGGATCTGCTTGCTT----------   1372
                     ||||||||.||||||||||||||.||.|||.|.|||.|||          
BPUM_2901___u   1312 GAATATTTCATGCCGGAATTTTTACGTGATGTCCTTACTTGGCGTCTGAA   1361

BSNT_04790___   1373 GGAAGCTTGCACAATAA   1389
                     ||||||   ||||..| 
BPUM_2901___u   1362 GGAAGC---CACATGA-   1374


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