Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04779 and BPUM_2892

See Amino acid alignment / Visit BSNT_04779 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_04779___yutF.1.24716.seq
#    -bsequence dna-align/BPUM_2892.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04779___yutF-BPUM_2892.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04779___yutF-BPUM_2892.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04779___yutF
# 2: BPUM_2892
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 809
# Identity:     575/809 (71.1%)
# Similarity:   575/809 (71.1%)
# Gaps:          76/809 ( 9.4%)
# Score: 2008.5
# 
#
#=======================================

BSNT_04779___      1 ATGAAAACATATAAAGGGTATTTAATTGATTTAGACGGAACGATGTACAA     50
                     |||||   |||.|||||.||.||||||||||||||||||||.|||||.||
BPUM_2892          1 ATGAA---ATACAAAGGCTACTTAATTGATTTAGACGGAACAATGTATAA     47

BSNT_04779___     51 TGGCACGGAAAAAATCGAGGAGGCGTGTGAATTTG-TCA------GAACG     93
                     .||.||.|||||.||||||||.||..||.|||||| |||      .||||
BPUM_2892         48 AGGAACAGAAAAGATCGAGGAAGCAGGTCAATTTGTTCAAAAGTTAAACG     97

BSNT_04779___     94 --CTGAAAGATCGCGGCGTTCCTTATCTT-TTCGTGACAAACAACTCTTC    140
                       || |||.|        ||||.|| ||| ||.||.||.||.|||||.||
BPUM_2892         98 AACT-AAATA--------TTCCCTA-CTTGTTTGTCACGAATAACTCGTC    137

BSNT_04779___    141 GCGCACACCGAAGCAGGTAGCGGACAAGCTCGTGTCTTTTGATATTCCGG    190
                     .|||||.||.||||||||||||||.||.||.||.||.||.|||||.||.|
BPUM_2892        138 ACGCACGCCAAAGCAGGTAGCGGAAAAACTTGTTTCATTCGATATCCCAG    187

BSNT_04779___    191 CAACAGAAGAGCAGGTCTTCACGACCAGCATGGCAACTGCCCAGCACATT    240
                     ||||.|||||.||.|||||.||.||.||.||||||||.|||.|..|.|||
BPUM_2892        188 CAACTGAAGAACAAGTCTTTACAACAAGTATGGCAACAGCCAATTATATT    237

BSNT_04779___    241 GCACAGCAGAAAAAAGACGCGTCTGTGTATGTGATTGGGGAGGAAGGAAT    290
                     ||..|.||.||.||||||||||||||.||.||.||.||.||.||||||||
BPUM_2892        238 GCTGAACAAAAGAAAGACGCGTCTGTTTACGTCATCGGTGAAGAAGGAAT    287

BSNT_04779___    291 CCGCCAGGCGATTGAAGAAAACGGCCTGACATTTGG--CGGAGAAAACGC    338
                     |...|||||.|||||||||||.||.|||||||||||  .||||  .|.||
BPUM_2892        288 CAAGCAGGCCATTGAAGAAAAAGGGCTGACATTTGGTCAGGAG--GATGC    335

BSNT_04779___    339 GGACTTTGTCGTTGTTGGCATCGACCGTTCCATTACATACGAAAAATTTG    388
                     .||.||.||.||.|||||.||.||.||...|||.|||||.||||||||.|
BPUM_2892        336 TGATTTCGTTGTGGTTGGAATTGATCGAAGCATGACATATGAAAAATTCG    385

BSNT_04779___    389 CTGTCGGCTGC-CTGGCAATCAGAAATGGCGCCCGCTTTATTTCCACTAA    437
                     |.||.|| ||| .|.||.|||.|..|.|||||.|..|||.|.||.||.||
BPUM_2892        386 CAGTAGG-TGCGATTGCTATCCGTCAAGGCGCACAATTTGTCTCAACAAA    434

BSNT_04779___    438 CGGAGATATTGCGATTCCGACTGAAAGAGGGCTTCTGCCGGGAAACGGCT    487
                     .|||||.|||||.|||||.||.|||||||||||||||||.||.|||||||
BPUM_2892        435 TGGAGACATTGCCATTCCAACAGAAAGAGGGCTTCTGCCAGGTAACGGCT    484

BSNT_04779___    488 CACTGACATCGGTGTTAACCGT----ATCTACAGGTGTACAGCCTGTATT    533
                     ||.|.|||||.||.||.|||||    | |.|||   ||.|||||...|||
BPUM_2892        485 CATTAACATCTGTATTGACCGTCACCA-CGACA---GTTCAGCCAACATT    530

BSNT_04779___    534 TATCGGCAAGCCGGAATCAATTATTATGGAGCAGGCGATGCGCGTTCTCG    583
                     ||||||.|||||.|||||.||.||.|||||.||.||.|||||.||.||||
BPUM_2892        531 TATCGGAAAGCCAGAATCCATCATCATGGAACAAGCCATGCGGGTGCTCG    580

BSNT_04779___    584 GCACAGATGTGTCTGAAACACTCATGGTCGGCGACAACTACGCCACTGAT    633
                     |.||.|||||||||||.||.||||||||.||.||.|||||.|..||.|||
BPUM_2892        581 GGACGGATGTGTCTGAGACGCTCATGGTGGGTGATAACTATGATACGGAT    630

BSNT_04779___    634 ATTATGGCCGGCATTAACGCGGGTATGGATACGCTGCTCGTTCACACAGG    683
                     ||||||||.||.||.||.||.||.|||||.||..||||||||||.|||||
BPUM_2892        631 ATTATGGCAGGAATGAATGCAGGCATGGACACATTGCTCGTTCATACAGG    680

BSNT_04779___    684 CGT---AACGAAAAG---------AGAACATATGACAGACGATATGGAAA    721
                     |||   ||| |||||         ||||| |||||.|          ||.
BPUM_2892        681 CGTGACAAC-AAAAGAGCTGCTTCAGAAC-TATGATA----------AAC    718

BSNT_04779___    722 AACCGACTCACGCCATTGACTCTCTGACTGAATGGATT---------CCA    762
                     |.||.||..|.|.||||||.||..|..||||.||||||         .||
BPUM_2892        719 AGCCAACCTATGTCATTGATTCATTATCTGAGTGGATTGAACGATTATCA    768

BSNT_04779___    763 TACATTTGA    771
                     ||.      
BPUM_2892        769 TAA------    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04779 and BPUM_2892

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
