Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04775 and BPUM_2890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_04775___yutH.1.24716.seq
# -bsequence dna-align/BPUM_2890___cotS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04775___yutH-BPUM_2890___cotS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04775___yutH-BPUM_2890___cotS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04775___yutH
# 2: BPUM_2890___cotS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 700/1116 (62.7%)
# Similarity: 700/1116 (62.7%)
# Gaps: 183/1116 (16.4%)
# Score: 1973.0
#
#
#=======================================
BSNT_04775___ 1 AT-------GGTGAAAGGTACAATAAAAGAAAAATACGGCATT-----CA 38
|| ||||||| || ||.||||||| .|||| ||
BPUM_2890___c 1 ATGAACGCAGGTGAAA---AC-ATGAAAGAAA------CCATTTATCACA 40
BSNT_04775___ 39 CATCAGG-------------CAGCT--TTCCATGTAC--CAGCACACATA 71
|||..|| ||.|| |.||| ||| ||| .||
BPUM_2890___c 41 CATTTGGTATTGATGTGCGTCAACTAATGCCA--TACGGCAG-----TTA 83
BSNT_04775___ 72 TCAATGCTTTCAGACGCCTAATTCATACTTTCTGATTGTCCCCGTTTCCC 121
|||..|||||||.|||.|..|..|...||||.|.|||||.||.||.||.|
BPUM_2890___c 84 TCAGAGCTTTCAAACGTCGGAGGCTCTCTTTATCATTGTTCCTGTGTCTC 133
BSNT_04775___ 122 AATTCTCAGAAACAGAGCTGGCGGAGCTTTATTACATGAGTCAGTATTTA 171
|.||...||||..|||.||..|.|||||.|.|.|.||.||||||||||||
BPUM_2890___c 134 ATTTGCGAGAAGAAGAACTCACAGAGCTGTTTCATATCAGTCAGTATTTA 183
BSNT_04775___ 172 C--AA-----GAACAAAGTGACCCATACGTTTCGGTTTTTATCTTTACAA 214
| || || |||||||||||..|.||.|||...||.||||
BPUM_2890___c 184 CTGAATGCCGGA-------GACCCATACGTCGCTGTGTTTGAATTAACAA 226
BSNT_04775___ 215 AAGAAGGTGAACTGACATTTGAACATGAGGGAAA--AAC-GTACGCTCTG 261
|.||||...|||..||.|||...||| ||||| |.| |||.|||.|.
BPUM_2890___c 227 ATGAAGAGAAACCCACCTTTACTCAT---GGAAAGGAGCTGTATGCTTTA 273
BSNT_04775___ 262 CTGAAGGCGGCCCCCCCTTAT-TCAAACAGGGCGTTCTCCATTGGAG-CG 309
.|.|||||.|||||.|| .|| ||||.|.|..|||| ||.|..||.| |.
BPUM_2890___c 274 TTAAAGGCAGCCCCGCC-GATATCAAGCCGCTCGTT-TCAACAGGCGTCA 321
BSNT_04775___ 310 GAGCTTGCGGAATTTCACCGAAAAGGCCGAGGATATCCATATGAGGTGAA 359
|||||.||||..|||||....|..||..||||||.||||||||||||
BPUM_2890___c 322 GAGCTGGCGGCCTTTCATGTCAGGGGAAGAGGATTTCCATATGAGGT--- 368
BSNT_04775___ 360 GGCAGCCGGAA--GAATCG-------GCCAGTGGAAGGATCTGTGGGGAA 400
|.|.||| .||.|| ||| ||||||||..|.||||.||
BPUM_2890___c 369 ----GTCTGAAACAAAACGTGTGGGTGCC--TGGAAGGAATTATGGGCAA 412
BSNT_04775___ 401 AACGAATTGATCAGCTGGAAGCATTCTG---GCAGAGAAAGGTTC---AG 444
||||..|.||||||||.||||..||.|| |||| .|||.|..| |.
BPUM_2890___c 413 AACGGTTAGATCAGCTTGAAGGTTTTTGGATGCAG-CAAATGCACCAAAA 461
BSNT_04775___ 445 ACCCCTCCGCATGAGCCATTCGATAAAAAAATGATCGAATCATTTCCATA 494
|||.|| .||.|..||.||.||||||.|.||||||||.|||||.||
BPUM_2890___c 462 ACCACT-----AGAACGGTTTGAAAAAAAATTCATCGAATCCTTTCCGTA 506
BSNT_04775___ 495 TTATTTAGGACTGTCAGAAAACGCGATACAATATTTAGTGGACACTGAGC 544
||||.|.|||.|..|.||||||||.||.||||||||||||||.|||||||
BPUM_2890___c 507 TTATCTTGGATTAACGGAAAACGCCATTCAATATTTAGTGGATACTGAGC 556
BSNT_04775___ 545 TGGATGACAAGCCCCAAGCCGCTGATTCAGGAACGATATGCCATCAGCGG 594
|.|||||..|.||..|||....|||.|||||.||..|.|||||.|||||.
BPUM_2890___c 557 TAGATGATGAACCGAAAGAATGTGACTCAGGCACTGTCTGCCACCAGCGT 606
BSNT_04775___ 595 AT-----GGAAAGGCATACATGGTCACCGGAATCATTGATCAGGATTCCG 639
.| |||.| ||||||.|.| ||||.||| |||
BPUM_2890___c 607 TTTTCGCGGAGA-----ACATGGCCGC--------TTGAGCAG----CCG 639
BSNT_04775___ 640 --GCG----------GATTGGGTGTTTGACCACGCTTCCCGTGATTTGGC 677
||| ||||||||.|||||.||..|..||||.|||.|.||
BPUM_2890___c 640 CTGCGTTTACCTGTAGATTGGGTCTTTGATCATCCAACCCGGGATATCGC 689
BSNT_04775___ 678 TGAATA--TATGAGGCATACGTTTTTGCATCACAGACAAGATTTTAATCA 725
.||||| ||.||| |.||.|||.|.||.||.|...|||||||.|.|.|
BPUM_2890___c 690 CGAATACTTAAGAG--AAACCTTTGTCCAGCATAAGGAAGATTTAATTGA 737
BSNT_04775___ 726 GCAGGGCTTTCTCTTTTTACAGGAATACGAGCAAGTCACACCGCTGTCTT 775
..||||||||..||||.|.|||.||||.|||||.||.|||||.||.||||
BPUM_2890___c 738 AGAGGGCTTTTCCTTTCTTCAGCAATATGAGCAGGTGACACCACTATCTT 787
BSNT_04775___ 776 CATTTTCGAAACGCCTTTTATACAGCCGTCTGCTTTTCCCGCTTCATTAT 825
|.|||||.||.||..|.||||||||.||..||.|.||.||||||||||||
BPUM_2890___c 788 CTTTTTCTAAGCGTTTGTTATACAGTCGCTTGTTGTTTCCGCTTCATTAT 837
BSNT_04775___ 826 TTTGAAATCGTAGAAAGCTATTACATGTCATCAGAATCAGAAAAGCAT-- 873
||||||||.||.|||.|.||.||.|||||...||||.|.||||| ||
BPUM_2890___c 838 TTTGAAATTGTGGAAGGTTACTATATGTCGGGAGAAACTGAAAA--ATCA 885
BSNT_04775___ 874 TATTTTGAAGAACAGCTTAACTTCATTCTT-AATGACTGTGGG---CGTT 919
||||.||||||||.|| ||..||...|||| ||||| ||.| ||.|
BPUM_2890___c 886 TATTATGAAGAACGGC-TAGATTACGTCTTAAATGA---TGCGAATCGCT 931
BSNT_04775___ 920 ATGAACAATTTCTCAATACAGCG------CAGGAATTCATGAAT---ATG 960
|||||.|.|||||.|| | ||.||| ||||.| |||
BPUM_2890___c 932 ATGAATACTTTCTAAA------GGTCTTTCAAGAA---ATGAGTGCCATG 972
BSNT_04775___ 961 CG----GGCGCAGAAGCTGTTTGTTCCACGCGTCAGCTGGCTCGGCAAAG 1006
|| |||| |.||| .||.||||||..||..|||||.| ||.||
BPUM_2890___c 973 CGAAGCGGCG--GGAGC--CTTATTCCACCTGTTGGCTGGAT---CACAG 1015
BSNT_04775___ 1007 G--CAGCTCAGGGTGA 1020
| || ||.| ..|||
BPUM_2890___c 1016 GTCCA-CTGA-TTTGA 1029
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