Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04770 and BPUM_2885
See
Amino acid alignment /
Visit
BSNT_04770 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_04770___yuxL.1.24716.seq
# -bsequence dna-align/BPUM_2885.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04770___yuxL-BPUM_2885.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04770___yuxL-BPUM_2885.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04770___yuxL
# 2: BPUM_2885
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2215
# Identity: 1269/2215 (57.3%)
# Similarity: 1269/2215 (57.3%)
# Gaps: 485/2215 (21.9%)
# Score: 3149.5
#
#
#=======================================
BSNT_04770___ 1 ATGAAAAAGCTGATAACCGCAGACGACATCACAGCGATTGTCTCTGTGAC 50
|||||.||..||||.||.|||||.||..|.||....|||||.|||||..|
BPUM_2885 1 ATGAAGAAATTGATGACAGCAGAAGATTTAACGAAAATTGTTTCTGTTTC 50
BSNT_04770___ 51 AGATCC-------TCAATACGCCCCAGACGGCACCCGTGCCGCATATGTA 93
..|||| ||| |||||.||.| |
BPUM_2885 51 TCATCCGGTTTATTCA-------CCAGATGGAA----------------A 77
BSNT_04770___ 94 AAA--------TCACAA--------GTGAATCAAGAGAAAGATTCGTATA 127
||| |.|||| ||||||.|..|.||.|| ||..||
BPUM_2885 78 AAAGGCGGTTTTTACAAAGGTCACGGTGAATGACAAAAAGGA--CGATTA 125
BSNT_04770___ 128 CATCA--AATATATGGATCT----ATGAAACGAAAACGGGCGGGTCTGT- 170
||.|| .||.|||||.| | |||||..||.| |.||..||||
BPUM_2885 126 CAACATCCATTTATGGGT-TCGAGATGAAGAGACA----GAGGAGCTGTC 170
BSNT_04770___ 171 TCCTTGGACACATGGAGAAAAGCGAAGCA-------CCGACCCAAG-ATG 212
.|..||||||..||..| |||..||||| ||| | .||
BPUM_2885 171 ACAATGGACATTTGAGG--AAGGAAAGCATTATCAGCCG------GTGTG 212
BSNT_04770___ 213 GTCTCCGGACGGGTGCAC-GCTTGCCTTTATTTCTGATCGAGAAGGC--- 258
|||....|||.|..| || |||.||.||||||| |..|.|||.|
BPUM_2885 213 GTCAAAAGACAGCAG-ACAGCTCGCGTTTATTT----TGCAAAAGCCAAA 257
BSNT_04770___ 259 -GATGCGGCACAGC-TGTATATGAT---GAGCGCTGAAGGCGGAG-AAGC 302
||.||..|.|||| ||.| .|||| |.|||..|.||||||.| |.||
BPUM_2885 258 GGAAGCTCCTCAGCTTGCA-CTGATTCAGTGCGAGGGAGGCGGTGTACGC 306
BSNT_04770___ 303 GAGAAAAC--TGACTGATATCCCGTATGGCGTGTCAAAGCCAATATGGTC 350
|| |.||.|..||.||.||.||.||.||..|.||..|.|..||
BPUM_2885 307 ------ACCTTAACGGCGATTCCTTACGGGGTATCTCATCCTGTCTTTTC 350
BSNT_04770___ 351 CCCGGATGGCGAATCGATT-------CTG-GTCACTG------------T 380
.|..|||||.|..|..||| ||| ||||||| |
BPUM_2885 351 ACTAGATGGAGCTTTCATTTATGCGGCTGTGTCACTGAAACCATCAGAAT 400
BSNT_04770___ 381 CAGTTTGGGAGAGGGAGGAAACATTGATGACCGAGAAAAAA--CAGAGCA 428
|.||| || |||||| |||.|| .|||||.
BPUM_2885 401 CTGTT----------------CA-TGATGA-----AAAGAAGGAAGAGCG 428
BSNT_04770___ 429 GGA-----------CAGC----TATGAACCTG--TTGAAGTGCAAGGCCT 461
||| |.|| ||||| || ||||
BPUM_2885 429 GGATGAGTTCGCTCCTGCGGTATATGA---TGATTTGA------------ 463
BSNT_04770___ 462 CTCCTACAAACGGGACGGCAAAGGGCTGACGAGAGGTGCG-TATGCCCAG 510
||||.|||...||.||||.| ||||....|||.|.||| |.|.|.|||
BPUM_2885 464 --CCTATAAAGCAGATGGCAGA-GGCTTTTTAGATGGGCGTTTTACGCAG 510
BSNT_04770___ 511 CTTGTGCTTGTCAGCGTAAAGTCGGGTGAGAT-GA-------AAGAGCTG 552
.||.|.||.||.|..||..|.||.||.||||| || |.||||.|
BPUM_2885 511 ATTATTCTAGTAAATGTTCATTCAGGAGAGATCGAGGCAGTTACGAGCGG 560
BSNT_04770___ 553 ACAAGTCACAAAGC-TGATCATGGTG-ATCCTGCTTTTTCTCC-TGACGG 599
|| ||| |.||||| ||| |||...|..|.||||| || |||
BPUM_2885 561 AC---------AGCATCATCAT-GTGAATCACACGCTCTCTCCATG-CGG 599
BSNT_04770___ 600 CAAATGGCTTG----TTTTCTCAGCTAATTTAA--CTGAAACAGATGATG 643
.|||||||||| |.||| |||..|| ||.||
BPUM_2885 600 GAAATGGCTTGCCTATATTC------AATCAAATCCTCAA---------- 633
BSNT_04770___ 644 CCAGCAAGCCGCATGATGTTTACATAATGTCACTGGAGTCTGGAGATC-T 692
||.|| |||||||| ||.||..|.|.|| ..|||| |
BPUM_2885 634 -----AAACC---------TTACATAA-GTGACGTGTGCCT-CCGATCAT 667
BSNT_04770___ 693 TA-AGCAGGTTAC--------ACCTCATCGCGGCTCATTCGGATCAAGCT 733
|| ||.|.|.||| |..||| |.||.|| ||||.||.
BPUM_2885 668 TAGAGGACGGTACGACAAAGAAAATCA------CACAATC--ATCAGGCG 709
BSNT_04770___ 734 CATTTTC-ACCAGACGGAAGGTATCTTGCTTTGC---------------- 766
|.|.||| ||| |||||| |||||
BPUM_2885 710 CTTATTCTACC---------GTATCT---TTTGCTCCTAATGGAGAGAGC 747
BSNT_04770___ 767 ----------TTGGAAATGAAAAGGAATATAAGAATGCTACGCTCTCAAA 806
|.|||.||||....||||.|.|.||||||||..||.||
BPUM_2885 748 CTCGTGTATATCGGACATGAGCGCGAATTTCAAAATGCTACTTTCCCA-- 795
BSNT_04770___ 807 GGC---GTGGCTCTATGATATCGAACAAGGCCGCCTCACATGTC------ 847
|| .|||||.||||||.| |||..||| .|.|||||
BPUM_2885 796 -GCATTATGGCTGTATGATCT-GAAGGAGG------GAAATGTCGTTCAG 837
BSNT_04770___ 848 -TTACTGAGATGCTGGACGTTCATTTAGCGGATGCG-----CTGATT--- 888
|..|.||.|||||.||..| |.|||.| |||..|
BPUM_2885 838 TTGTCAGAAATGCTCGATAT---------GTATGTGGGCAACTGTATGGC 878
BSNT_04770___ 889 -GGAGATTCATTGATCGGTGGTGCTGAACAGCGCCCGATTTGGACAAAGG 937
||.|||...||.||.||.|..||..|.||||..|||...||||||||||
BPUM_2885 879 AGGGGATAGCTTTATGGGAGAAGCCAATCAGCTTCCGCAGTGGACAAAGG 928
BSNT_04770___ 938 ACAGCCAAGGGTTTTATGTCATCGGCACAGATCAAGGCAGTACGGGCATC 987
|.|||||.||||||||||...|.|...|.||||||||||||||.||.||.
BPUM_2885 929 ATAGCCAGGGGTTTTATGCGCTTGTTTCCGATCAAGGCAGTACAGGGATT 978
BSNT_04770___ 988 TATTATATTTCGATTGAAGGCCTTGTGTATCCGATTCGTCTGGAAAAAGA 1037
||||||.|.||..||||||||.|.|..|||||..||||..|.||...|||
BPUM_2885 979 TATTATTTCTCCGTTGAAGGCTTAGCCTATCCTGTTCGATTAGAGGCAGA 1028
BSNT_04770___ 1038 GTACATCAATAGCTTTTC-TCTTTCA-CCTGATGAA--CAGCACTTTATT 1083
..|.||||..|.| ||| .|.|||| ||.|||||| || .|.|
BPUM_2885 1029 ACATATCACAAAC--TTCAGCCTTCATCCAGATGAATCCA------AAAT 1070
BSNT_04770___ 1084 GCCAGTG-TGACAAAGCCGG-----ACAGACCG--------AGTGAGCT- 1118
|| || || |||||| || ||| ||||||||
BPUM_2885 1071 GC---TGCTG----AGCCGGCTGTCAC---CCGTTTCTCCAAGTGAGCTG 1110
BSNT_04770___ 1119 -------TTACAGTATCCCGCTTGGACAGGAAGA---GAAACAGCTGACT 1158
|.|||.|| ||..|||.||| .||.||..|.||.
BPUM_2885 1111 TGTGAGATGACATTA--------GGGGAGGCAGATCTAAAGCAAATCACA 1152
BSNT_04770___ 1159 GGCGCGAATGACAAGTTTGTCAGGGAGCATACGATATCAATACCTGAAGA 1208
..||.|.||||..|.||..|||.|||||||....||||..|||| |||
BPUM_2885 1153 TTCGAGCATGATGAATTCCTCAAGGAGCATGTCCTATCGGTACC---AGA 1199
BSNT_04770___ 1209 ---------GATTCAATATGCTACAGAAGACGGCGT-GATGGTGAACGGC 1248
|.||||.| ||.||||.||.|| || ||||.|.|||
BPUM_2885 1200 GCCATTTTCGTTTCAGT------CAAAAGAAGGTGTCGA-GGTGCATGGC 1242
BSNT_04770___ 1249 TGGCTGATGAGGCCTGCACAAATGGAAGGTGAGACAACATATCCACTTAT 1298
|||.|.||||.||||.|..|.|||||||..|.||..||.|||||.|||||
BPUM_2885 1243 TGGTTTATGAAGCCTTCCGAGATGGAAGAGGGGAAGACTTATCCGCTTAT 1292
BSNT_04770___ 1299 TCTTA-ACATACACGGCGGTCCGCATATGATGTACGGACATACATATTTT 1347
| ||| |.||.||.|||||.||||||...|||||.||..|||||||||||
BPUM_2885 1293 T-TTAGAAATTCATGGCGGACCGCATGCCATGTATGGTTATACATATTTT 1341
BSNT_04770___ 1348 CATGAGTTTCAGGTGCTGGCGGCGAAAGGATACGCGGTCGTTTATATCAA 1397
|||||.|||||..||||.||.||..||||.||.||..||||.||||||||
BPUM_2885 1342 CATGAATTTCAAATGCTCGCTGCTGAAGGCTATGCCATCGTGTATATCAA 1391
BSNT_04770___ 1398 TCCGAGAGGAAGCCACGGCTACGGGCAGGAATTTGT---GA--ATGCGGT 1442
|||....||.||.||.||.||.||.|| |||.|.| || || ||
BPUM_2885 1392 TCCTCATGGCAGTCATGGATATGGACA--AATGTTTACCGACCAT---GT 1436
BSNT_04770___ 1443 CAGAGGAGA-TTATGGGGGAAAGGATTATGACGATGTGATGCAGGCTGTG 1491
.||||| || .|||||.||....||||||||.|||||.|||||||||||.
BPUM_2885 1437 GAGAGG-GAGCTATGGTGGCGTTGATTATGAGGATGTCATGCAGGCTGTT 1485
BSNT_04770___ 1492 GAT----------GAGGCTATCAAACGAGATCCGCATATTGATCCTAAGC 1531
||| .||.|||| ||..||| ||||| .||.|
BPUM_2885 1486 GATCATGTGCTGAAAGCCTAT-----GATTTCC-----TTGAT--GAAAC 1523
BSNT_04770___ 1532 --GGCTCGGTGTCACGGGCGGAAGCTACGGAGGTTTTATGACCAACTGGA 1579
|.||.||.||.||.|||||.|||||.||.|||||||||||||||||||
BPUM_2885 1524 AAGACTTGGGGTGACAGGCGGCAGCTATGGCGGTTTTATGACCAACTGGA 1573
BSNT_04770___ 1580 TCGTCGGGCAGACGAACCGCTTTAAAGCTGCCGTTACCCAGCGCTCGATA 1629
|.|||||.|||||..||||.|||...||.|||||.||.|||||.||.||.
BPUM_2885 1574 TTGTCGGACAGACTGACCGTTTTCGCGCAGCCGTCACACAGCGGTCCATT 1623
BSNT_04770___ 1630 TCAAATTGGATCAGCTTTCACGGCGTCAGTGATATCGGCTATTTCTTTAC 1679
|||||.|||||.||||||.|.|||.|||||||||||||.||||.||||||
BPUM_2885 1624 TCAAACTGGATTAGCTTTTATGGCATCAGTGATATCGGTTATTACTTTAC 1673
BSNT_04770___ 1680 AGACTGGCAGCTTGA--GC-ATGAC-ATGTTTGAGGACACAGAAAAGCTC 1725
|...||||||.|.|| || ||..| |||.||.|| |.||.|||||.
BPUM_2885 1674 AAGGTGGCAGATCGAAGGCGATATCTATGATTCAG----CCGATAAGCTA 1719
BSNT_04770___ 1726 TGGGACCGGTCTCCTTTAAAATACGCAGCAAAC--GTGGAGACACCGCTT 1773
|||||.||.||.||..||||.||.| ..|||| ||..|.||.||||||
BPUM_2885 1720 TGGGATCGTTCACCGCTAAAGTATG--TGAAACAAGTAAATACGCCGCTT 1767
BSNT_04770___ 1774 TTGATACTGCA---TGGCGAGCGGGATGACCGATGTCCGATCGAGCAGGC 1820
.|.||.||||| ||.||| .||..|.||.||.||..||||.||.||
BPUM_2885 1768 CTTATCCTGCACAGTGACGA---AGACTATCGCTGCCCAGTCGATCAAGC 1814
BSNT_04770___ 1821 GGAGCAGCTGTTTATCGCTCTGAAAAAAATGGGCAAGGAAACCAAGCTTG 1870
.||.|||||.|||.|.||.|||||..|..|.||.||.||.||.|.|||.|
BPUM_2885 1815 AGAACAGCTATTTGTAGCACTGAAGGAGCTTGGGAAAGACACAAGGCTCG 1864
BSNT_04770___ 1871 TCCGTTTTCCGAATGCATCGCACAATTTGTCACGCACCGGACACCCAAGA 1920
||...||.|||||.|||||.||..||||.||..|.|..||.||.|||.|.
BPUM_2885 1865 TCAAATTCCCGAAGGCATCTCATGATTTATCGAGAAGTGGCCATCCAGGG 1914
BSNT_04770___ 1921 CAGCGGA-TCAAGCGCCTGAATTATATCA--GCTCATGGTTT---GACCA 1964
|||||.| |||| .|.||||..|.||||| |.| |||||| ||..|
BPUM_2885 1915 CAGCGTATTCAA-AGACTGACCTTTATCAAGGAT--TGGTTTAGAGAGAA 1961
BSNT_04770___ 1965 ATATCTCTAA----- 1974
.| |||
BPUM_2885 1962 GT-----TAAAATAA 1971
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.