Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04759 and BPUM_2877

See Amino acid alignment / Visit BSNT_04759 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04759___dapF.1.24716.seq
#    -bsequence dna-align/BPUM_2877___dapF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04759___dapF-BPUM_2877___dapF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04759___dapF-BPUM_2877___dapF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04759___dapF
# 2: BPUM_2877___dapF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     639/890 (71.8%)
# Similarity:   639/890 (71.8%)
# Gaps:          70/890 ( 7.9%)
# Score: 2160.5
# 
#
#=======================================

BSNT_04759___      1 ATGAACTCATTTCGATTTACCAAAATGCACGGCCTGGGAAACAGTTATAT     50
                     ||||..|||||||.|||.||.|||||||||||..|.|||||.|.||||||
BPUM_2877___d      1 ATGACATCATTTCAATTCACGAAAATGCACGGATTAGGAAATAATTATAT     50

BSNT_04759___     51 TTATGTGAATCA-ATTTGAA-GAACAGCTTCCAGAAGAAAAACTGTCAGA     98
                     .||.||.||||| |  |||| |||||||||||||||||.||.||.|||||
BPUM_2877___d     51 ATACGTTAATCAGA--TGAAGGAACAGCTTCCAGAAGAGAAGCTATCAGA     98

BSNT_04759___     99 GATTGCAATTCAGGTTTCTTCTGTTTATACAGGGATCGGATCCGACGGAA    148
                     |||.|||||.||||||||||||.||||.|||||.|||||.||.|||||||
BPUM_2877___d     99 GATAGCAATCCAGGTTTCTTCTATTTACACAGGAATCGGTTCAGACGGAA    148

BSNT_04759___    149 TGATCCTGATATGCCCATCAGACCAAGCGCCTGTTAAAATGCGGATTTTT    198
                     |||||||.||.||.||||||||....||.|||||.||||||||.|||||.
BPUM_2877___d    149 TGATCCTTATTTGTCCATCAGATGTTGCACCTGTGAAAATGCGCATTTTC    198

BSNT_04759___    199 AATAATGACGGATCTGAAGGGAAAAACTGCGGCAACGGCCTGCGCTGCGT    248
                     ||.|||||.|||||.||.||||||||||||||||||||.||||||||.||
BPUM_2877___d    199 AACAATGATGGATCAGAGGGGAAAAACTGCGGCAACGGTCTGCGCTGTGT    248

BSNT_04759___    249 CGCAAAATACGCATATGAGCATAAGCTGGTTGAGGAAACATCTTTTCTGA    298
                     |||||||||.|..|||||||||.|..|.||....||.|||.|.||.|.||
BPUM_2877___d    249 CGCAAAATATGTGTATGAGCATCAAATCGTAACAGACACAACGTTCCAGA    298

BSNT_04759___    299 TTGAAACTCTCTCCGGGCTTGTGAAAGCGGAGGTTCAAGTCGAAAACGGA    348
                     ||||.||..|.||.||.||.||..|||||...|||||.||..|    |||
BPUM_2877___d    299 TTGAGACATTGTCAGGACTCGTTGAAGCGACCGTTCATGTGCA----GGA    344

BSNT_04759___    349 AAAGTGA--------ATGTGGTCACTGTCGATATGGGCGAA-CCGCG-CT    388
                         |||        ||.|.||.||.||.|||||||| ||| ||.|| .|
BPUM_2877___d    345 ----TGACCACGTTCATTTAGTAACAGTAGATATGGG-GAAGCCTCGTTT    389

BSNT_04759___    389 TGACAAAATCCG-AGC--TCCCGATGCTTGACGGCGGGGAA-----GAGC    430
                     |||.|||    | |||  |.|||||||||      ||.|||     .|||
BPUM_2877___d    390 TGAAAAA----GAAGCAATGCCGATGCTT------GGTGAACCAGCAAGC    429

BSNT_04759___    431 AC-ACAATCAATGAAACGATGGCATTTGGTGAAGTAGAAC-TAACAGGCA    478
                     || ||.||.||||||.||.|.| ||||.|..|.|..||.| |||..||.|
BPUM_2877___d    430 ACAACGATTAATGAACCGCTTG-ATTTTGGCACGACGACCTTAAATGGAA    478

BSNT_04759___    479 CTGCCGTTTCAATGGGAAATCCGCATATCGTTTTTCCGATCGCAGACATT    528
                     |.||.|||||||||||.|||||.||.|||||.|||....|.|..||||||
BPUM_2877___d    479 CGGCTGTTTCAATGGGTAATCCTCACATCGTGTTTTATTTAGAGGACATT    528

BSNT_04759___    529 GAACAGGCACC-CTTAACGACACTGGGGCCGGTGATTGAGAAAGATCCGA    577
                     |||.||||||| |||.| .|||||.||.||..|.||.||.|||.|  |||
BPUM_2877___d    529 GAAAAGGCACCGCTTGA-TACACTTGGACCAATCATCGAAAAACA--CGA    575

BSNT_04759___    578 GA--TTTCCGGAAGGCATCAATGTGGAATTCGTTGAAACCGTGAATGAAC    625
                     .|  ||.||.||||||.|||||||||||||.||.|||...||.|.||||.
BPUM_2877___d    576 CATGTTCCCAGAAGGCGTCAATGTGGAATTTGTAGAAGTGGTCAGTGAAA    625

BSNT_04759___    626 AAGAATTGCATTTCCGCGTCTGGGAACGGGGATCAGGGATTACTCAGGCA    675
                     .|||..|||||||.||.||.||||||.|.||.|||||||||||.|||||.
BPUM_2877___d    626 CAGAGCTGCATTTTCGTGTGTGGGAAAGAGGTTCAGGGATTACACAGGCT    675

BSNT_04759___    676 TGCGGGACAGGAGCATGTGCAGCGGCAGT---CGCA--TCTGTATTAAAC    720
                     |||||.|||||.||||||||.|||||.||   |.||  |.||.||..|..
BPUM_2877___d    676 TGCGGAACAGGGGCATGTGCTGCGGCCGTATCCACAATTGTGAATGGACA    725

BSNT_04759___    721 GGCGTATCAAAGCGAAATCAAGACATCACGGTGCATTTAGCAGGCGGGGA    770
                     ||||.|  |||| ||||  .||||||.|||||.||.|||||||||||.||
BPUM_2877___d    726 GGCGAA--AAAG-GAAA--CAGACATGACGGTTCACTTAGCAGGCGGAGA    770

BSNT_04759___    771 TTTGGTGATAAACTGGAAAGATAACGGCCATGTAATGATGACAGGGCCGG    820
                     |.|..|.||...|||||||||.||.|..|||||..|||||||.||.||.|
BPUM_2877___d    771 TCTCATCATTCGCTGGAAAGACAATGAGCATGTGCTGATGACTGGACCTG    820

BSNT_04759___    821 CTGAAACCGTTTGTGAGGG----TGTCTATTTCT-TGTAA    855
                     |||||||..|||||||.||    |     |||.| |||||
BPUM_2877___d    821 CTGAAACGATTTGTGACGGCACAT-----TTTATCTGTAA    855


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04759 and BPUM_2877

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
