Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04725 and BPUM_2873
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_04725___yumC.1.24716.seq
# -bsequence dna-align/BPUM_2873.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04725___yumC-BPUM_2873.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04725___yumC-BPUM_2873.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04725___yumC
# 2: BPUM_2873
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 791/1007 (78.6%)
# Similarity: 791/1007 (78.6%)
# Gaps: 16/1007 ( 1.6%)
# Score: 3061.5
#
#
#=======================================
BSNT_04725___ 1 ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACC 50
||||.|||.|||.|.|||||.|||||.|||||..||||.||.||.||.||
BPUM_2873 1 ATGCAAGAAGATTCTAAGGTATATGACATTACCGTTATCGGGGGCGGCCC 50
BSNT_04725___ 51 GGTCGGCTTATTCACCGCTTTTTACGGCGGGATGAGACAGGCAAGAGTCA 100
.||.||.||.||.||.||.||||||||.||.||||||||||||||.||.|
BPUM_2873 51 AGTAGGATTGTTTACTGCGTTTTACGGTGGCATGAGACAGGCAAGTGTGA 100
BSNT_04725___ 101 AAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTA-GCGCCCTATA 149
||||.||.||||||||.||||||||||||||.|| .||| .|||.||.||
BPUM_2873 101 AAATCATTGAAAGCCTTCCTCAGCTCGGCGGTCA-ATTATCCGCTCTTTA 149
BSNT_04725___ 150 CCCTGAGAAGTATATATATGATGTAGCGGGATTCCCGAAAATCCGTGCGC 199
||||||.||.||.||.||||||||.||.||.||.||.||||||||.||.|
BPUM_2873 150 CCCTGAAAAATACATTTATGATGTGGCTGGTTTTCCAAAAATCCGCGCAC 199
BSNT_04725___ 200 AAGAGCTTA-TCAATAACCTAAAAGAGCAAATGGCAAAATTCGACCAAAC 248
|||| .||| |..|||||.||||.||.|||||||..|||||.||.|||||
BPUM_2873 200 AAGA-ATTAGTTGATAACTTAAAGGAACAAATGGATAAATTTGATCAAAC 248
BSNT_04725___ 249 CATTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCG 298
||||||..|.||||||||.||||||.|.|||||.||.||.||.||.||..
BPUM_2873 249 CATTTGCTTAGAGCAAGCAGTTGAAACGGTTGAAAAGCAGGCAGATGGGA 298
BSNT_04725___ 299 TGTTTAAGCTTGTAACAAATGAAGAAACCCACTACTCTAAAACGGTCATC 348
|.|||||.||||||||||||.||||.|..||.||.|||||||||.|||||
BPUM_2873 299 TCTTTAAACTTGTAACAAATCAAGAGATTCATTATTCTAAAACGATCATC 348
BSNT_04725___ 349 ATCACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAA 398
|||||.||.||.|||||.||||||.|||||||||||||.||.|| |.|
BPUM_2873 349 ATCACAGCTGGTAACGGTGCATTCCAACCGAGAAAGCTTGAGCT---AGA 395
BSNT_04725___ 399 TGCCGAGCAG-----TATGAAGGCAAAAACCTCCATTACTTCGTTGATGA 443
||| ||||| |.||||||.|..|||||.|||||||||.||.||||
BPUM_2873 396 TGC--AGCAGAATCATTTGAAGGAAGCAACCTGCATTACTTCATTAATGA 443
BSNT_04725___ 444 TCTGCAAAAATTCGCCGGCAGACGCGTTGCGATCCTTGGCGGTGGAGATT 493
|.||.|..||||.||.||.|||||.||.||..|.||||||||.|||||.|
BPUM_2873 444 TTTGAACCAATTTGCTGGGAGACGTGTGGCCGTTCTTGGCGGCGGAGACT 493
BSNT_04725___ 494 CCGCGGTTGACTGGGCGCTTATGCTTGAGCCGATCGCAAAAGAAGTATCG 543
|.||.||.|||||||||||.||||||||.||.|||||||||||.|||||.
BPUM_2873 494 CTGCAGTGGACTGGGCGCTGATGCTTGAACCTATCGCAAAAGAGGTATCC 543
BSNT_04725___ 544 ATCATTCACCGCCGTGACAAGTTCCGTGCGCACGAGCACAGTGTGGAAAA 593
||.|||||||||||.||.||.|||||.||.||.|||||||||||.|||||
BPUM_2873 544 ATTATTCACCGCCGAGATAAATTCCGCGCACATGAGCACAGTGTAGAAAA 593
BSNT_04725___ 594 CCTTCATGCGTCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGGAGC 643
.|||||....|||||.||.||||||.||||.|||||.|||||..||||||
BPUM_2873 594 TCTTCACAACTCGAAAGTCAATGTCGTGACGCCATTTGTCCCAACGGAGC 643
BSNT_04725___ 644 TGATCGGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGGC 693
|.||.||.||||||...||.||||||.|.|||||.||||||||.||||||
BPUM_2873 644 TTATTGGTGAAGACCGCATTGAACAGATTGTGCTCGAAGAAGTCAAAGGC 693
BSNT_04725___ 694 GACCGCAAAGAGATTTTAGAAATTGATGACTTAATCGTCAACTACGGTTT 743
|||...|||.|..|..|.||..|.||||||.|.||||||||||.|||.||
BPUM_2873 694 GACAAAAAACAAGTGCTTGATGTAGATGACGTGATCGTCAACTTCGGCTT 743
BSNT_04725___ 744 CGTTTCATCTCTTGGACCGATCAAAAACTGGGGTCTGGACATCGAGAAAA 793
.|||||.||.||||||||.||.||..|.||||||||.||.|||||.||.|
BPUM_2873 744 TGTTTCCTCCCTTGGACCAATTAAGCAATGGGGTCTTGAAATCGAAAAGA 793
BSNT_04725___ 794 ATTCCATTGTCGTAAAATCAACAATGGAAACAAATATCGAAGGCTTCTTT 843
|.||.||.|||||.|||||.||||||||||||||.||.||||||||||.|
BPUM_2873 794 ACTCGATCGTCGTGAAATCCACAATGGAAACAAACATTGAAGGCTTCTAT 843
BSNT_04725___ 844 GCAGCAGGTGACATTTGTACATACGAAGGAAAAGTCAACCTGATTGCCAG 893
||.|||||.|||||.|||||.||.||||||||||||||..||||||||||
BPUM_2873 844 GCGGCAGGAGACATCTGTACGTATGAAGGAAAAGTCAAATTGATTGCCAG 893
BSNT_04725___ 894 CGGCTTCGGTGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATGG 943
|||.||.|||||.|||||.||.||.||.|||||.||.||.||.|||||||
BPUM_2873 894 CGGATTTGGTGAAGCACCAACTGCTGTCAACAATGCGAAAGCCTACATGG 943
BSNT_04725___ 944 ACCCGAAAGCCCGCGTACAGCCTCTTCACTCAACAAGTCTT-TTTGAAAA 992
|||||||||||||.||||||||||||||.||.||||| ||| ||||||||
BPUM_2873 944 ACCCGAAAGCCCGTGTACAGCCTCTTCATTCCACAAG-CTTATTTGAAAA 992
BSNT_04725___ 993 TAAATAA 999
.||||||
BPUM_2873 993 CAAATAA 999
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