Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04725 and BPUM_2873

See Amino acid alignment / Visit BSNT_04725 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_04725___yumC.1.24716.seq
#    -bsequence dna-align/BPUM_2873.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04725___yumC-BPUM_2873.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04725___yumC-BPUM_2873.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04725___yumC
# 2: BPUM_2873
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity:     791/1007 (78.6%)
# Similarity:   791/1007 (78.6%)
# Gaps:          16/1007 ( 1.6%)
# Score: 3061.5
# 
#
#=======================================

BSNT_04725___      1 ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACC     50
                     ||||.|||.|||.|.|||||.|||||.|||||..||||.||.||.||.||
BPUM_2873          1 ATGCAAGAAGATTCTAAGGTATATGACATTACCGTTATCGGGGGCGGCCC     50

BSNT_04725___     51 GGTCGGCTTATTCACCGCTTTTTACGGCGGGATGAGACAGGCAAGAGTCA    100
                     .||.||.||.||.||.||.||||||||.||.||||||||||||||.||.|
BPUM_2873         51 AGTAGGATTGTTTACTGCGTTTTACGGTGGCATGAGACAGGCAAGTGTGA    100

BSNT_04725___    101 AAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTA-GCGCCCTATA    149
                     ||||.||.||||||||.||||||||||||||.|| .||| .|||.||.||
BPUM_2873        101 AAATCATTGAAAGCCTTCCTCAGCTCGGCGGTCA-ATTATCCGCTCTTTA    149

BSNT_04725___    150 CCCTGAGAAGTATATATATGATGTAGCGGGATTCCCGAAAATCCGTGCGC    199
                     ||||||.||.||.||.||||||||.||.||.||.||.||||||||.||.|
BPUM_2873        150 CCCTGAAAAATACATTTATGATGTGGCTGGTTTTCCAAAAATCCGCGCAC    199

BSNT_04725___    200 AAGAGCTTA-TCAATAACCTAAAAGAGCAAATGGCAAAATTCGACCAAAC    248
                     |||| .||| |..|||||.||||.||.|||||||..|||||.||.|||||
BPUM_2873        200 AAGA-ATTAGTTGATAACTTAAAGGAACAAATGGATAAATTTGATCAAAC    248

BSNT_04725___    249 CATTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCG    298
                     ||||||..|.||||||||.||||||.|.|||||.||.||.||.||.||..
BPUM_2873        249 CATTTGCTTAGAGCAAGCAGTTGAAACGGTTGAAAAGCAGGCAGATGGGA    298

BSNT_04725___    299 TGTTTAAGCTTGTAACAAATGAAGAAACCCACTACTCTAAAACGGTCATC    348
                     |.|||||.||||||||||||.||||.|..||.||.|||||||||.|||||
BPUM_2873        299 TCTTTAAACTTGTAACAAATCAAGAGATTCATTATTCTAAAACGATCATC    348

BSNT_04725___    349 ATCACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAA    398
                     |||||.||.||.|||||.||||||.|||||||||||||.||.||   |.|
BPUM_2873        349 ATCACAGCTGGTAACGGTGCATTCCAACCGAGAAAGCTTGAGCT---AGA    395

BSNT_04725___    399 TGCCGAGCAG-----TATGAAGGCAAAAACCTCCATTACTTCGTTGATGA    443
                     |||  |||||     |.||||||.|..|||||.|||||||||.||.||||
BPUM_2873        396 TGC--AGCAGAATCATTTGAAGGAAGCAACCTGCATTACTTCATTAATGA    443

BSNT_04725___    444 TCTGCAAAAATTCGCCGGCAGACGCGTTGCGATCCTTGGCGGTGGAGATT    493
                     |.||.|..||||.||.||.|||||.||.||..|.||||||||.|||||.|
BPUM_2873        444 TTTGAACCAATTTGCTGGGAGACGTGTGGCCGTTCTTGGCGGCGGAGACT    493

BSNT_04725___    494 CCGCGGTTGACTGGGCGCTTATGCTTGAGCCGATCGCAAAAGAAGTATCG    543
                     |.||.||.|||||||||||.||||||||.||.|||||||||||.|||||.
BPUM_2873        494 CTGCAGTGGACTGGGCGCTGATGCTTGAACCTATCGCAAAAGAGGTATCC    543

BSNT_04725___    544 ATCATTCACCGCCGTGACAAGTTCCGTGCGCACGAGCACAGTGTGGAAAA    593
                     ||.|||||||||||.||.||.|||||.||.||.|||||||||||.|||||
BPUM_2873        544 ATTATTCACCGCCGAGATAAATTCCGCGCACATGAGCACAGTGTAGAAAA    593

BSNT_04725___    594 CCTTCATGCGTCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGGAGC    643
                     .|||||....|||||.||.||||||.||||.|||||.|||||..||||||
BPUM_2873        594 TCTTCACAACTCGAAAGTCAATGTCGTGACGCCATTTGTCCCAACGGAGC    643

BSNT_04725___    644 TGATCGGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGGC    693
                     |.||.||.||||||...||.||||||.|.|||||.||||||||.||||||
BPUM_2873        644 TTATTGGTGAAGACCGCATTGAACAGATTGTGCTCGAAGAAGTCAAAGGC    693

BSNT_04725___    694 GACCGCAAAGAGATTTTAGAAATTGATGACTTAATCGTCAACTACGGTTT    743
                     |||...|||.|..|..|.||..|.||||||.|.||||||||||.|||.||
BPUM_2873        694 GACAAAAAACAAGTGCTTGATGTAGATGACGTGATCGTCAACTTCGGCTT    743

BSNT_04725___    744 CGTTTCATCTCTTGGACCGATCAAAAACTGGGGTCTGGACATCGAGAAAA    793
                     .|||||.||.||||||||.||.||..|.||||||||.||.|||||.||.|
BPUM_2873        744 TGTTTCCTCCCTTGGACCAATTAAGCAATGGGGTCTTGAAATCGAAAAGA    793

BSNT_04725___    794 ATTCCATTGTCGTAAAATCAACAATGGAAACAAATATCGAAGGCTTCTTT    843
                     |.||.||.|||||.|||||.||||||||||||||.||.||||||||||.|
BPUM_2873        794 ACTCGATCGTCGTGAAATCCACAATGGAAACAAACATTGAAGGCTTCTAT    843

BSNT_04725___    844 GCAGCAGGTGACATTTGTACATACGAAGGAAAAGTCAACCTGATTGCCAG    893
                     ||.|||||.|||||.|||||.||.||||||||||||||..||||||||||
BPUM_2873        844 GCGGCAGGAGACATCTGTACGTATGAAGGAAAAGTCAAATTGATTGCCAG    893

BSNT_04725___    894 CGGCTTCGGTGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATGG    943
                     |||.||.|||||.|||||.||.||.||.|||||.||.||.||.|||||||
BPUM_2873        894 CGGATTTGGTGAAGCACCAACTGCTGTCAACAATGCGAAAGCCTACATGG    943

BSNT_04725___    944 ACCCGAAAGCCCGCGTACAGCCTCTTCACTCAACAAGTCTT-TTTGAAAA    992
                     |||||||||||||.||||||||||||||.||.||||| ||| ||||||||
BPUM_2873        944 ACCCGAAAGCCCGTGTACAGCCTCTTCATTCCACAAG-CTTATTTGAAAA    992

BSNT_04725___    993 TAAATAA    999
                     .||||||
BPUM_2873        993 CAAATAA    999


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