Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04723 and BPUM_2872
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_04723___yumB.1.24716.seq
# -bsequence dna-align/BPUM_2872.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04723___yumB-BPUM_2872.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04723___yumB-BPUM_2872.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04723___yumB
# 2: BPUM_2872
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1273
# Identity: 892/1273 (70.1%)
# Similarity: 892/1273 (70.1%)
# Gaps: 74/1273 ( 5.8%)
# Score: 3037.0
#
#
#=======================================
BSNT_04723___ 1 ATGGGTCTAACAAAAGCAAAAAAAGAGAAGGTGGATGTGATGGCATTGAA 50
.||||
BPUM_2872 1 ---------------------------------------------GTGAA 5
BSNT_04723___ 51 TAAGCCCAAAATCGTGATTTTAGGTGCAGGATATGGCGGATTGATGACGG 100
|||.||.||||||||..|.|||||||||||.|||||||||||.|||||.|
BPUM_2872 6 TAAACCGAAAATCGTTGTATTAGGTGCAGGTTATGGCGGATTAATGACTG 55
BSNT_04723___ 101 TGACAAGGCTGACGAAGTATGTCGGGCCGAATGATGCTGACATTACGCTT 150
|.|||||..|.||.||..|..|.||..|.||||||||.||||||||.|||
BPUM_2872 56 TAACAAGATTAACAAAACAGCTTGGCACAAATGATGCGGACATTACTCTT 105
BSNT_04723___ 151 GTAAATAAACACAATTATCATTATGAAACGACATGGATGCATGAAGCGAG 200
||.||.||.||.|||||||||||.|||||.||||||.|.||||||||.||
BPUM_2872 106 GTGAACAAGCATAATTATCATTACGAAACAACATGGTTACATGAAGCAAG 155
BSNT_04723___ 201 CGCGGGTACGCTCCATCATGACCGCTGCCGTTATCAGATAAAAGATGTAA 250
.||.||||||||.||||||||||||||.|||||.||.||.||||||||.|
BPUM_2872 156 TGCAGGTACGCTTCATCATGACCGCTGTCGTTACCAAATCAAAGATGTGA 205
BSNT_04723___ 251 TCAACCAG-TCACGGGTGAATTTTGTACAGGATACCGT--AAAGGCAATC 297
|.|| ||| ||.||.||.||.||||||||.|..||.|| |||| .||.
BPUM_2872 206 TTAA-CAGTTCCCGTGTCAACTTTGTACAAGCAACAGTTGAAAG--CATT 252
BSNT_04723___ 298 AAAATTGATGATAAAAAAGTTGTG-CTTGCGAATGGGGAACTGCAGTACG 346
||.|..||.||.||.||||||||| |.| |..||||.|||||....||||
BPUM_2872 253 AATAAGGAAGAGAAGAAAGTTGTGACAT-CAGATGGCGAACTTTCTTACG 301
BSNT_04723___ 347 ATTATTTAGTCATCGGGCTCGGCGCCGTGCCTGAAACGTTCGGCATTAAA 396
|.||..|.||..|.|.|||.||.||.||.||||||||.||.||.|||..|
BPUM_2872 302 ACTACCTTGTTGTTGCGCTTGGTGCTGTTCCTGAAACATTTGGTATTGCA 351
BSNT_04723___ 397 GGCTTAAAAGAATATGCGTTTCCGATTGCCAACATCAACACGTCGCGCCT 446
||..|.|||||.|||||.||..|.||..|.|||||||||.|..|.||.|.
BPUM_2872 352 GGACTGAAAGAGTATGCATTCTCAATCTCTAACATCAACTCTGCTCGTCA 401
BSNT_04723___ 447 GCTGCGGGAACATATTGAGCTGCAGTTTGCGACTTACAATACGGAAGCGG 496
|||.||.||.||.|||||.||.||.||||||||.||.|||||||||||.|
BPUM_2872 402 GCTTCGTGAGCACATTGAACTTCAATTTGCGACGTATAATACGGAAGCTG 451
BSNT_04723___ 497 AAAAACGGCCGGACAGGTTAACGATCGTTGTTGGCGGTGCCGGATTTACG 546
|||||||.||.||..|.||.||.||||||||.||||||||.||.||.||.
BPUM_2872 452 AAAAACGTCCAGAGCGCTTGACAATCGTTGTCGGCGGTGCGGGCTTCACA 501
BSNT_04723___ 547 GGAATTGAATTTCTTGGCGAACTGGCTGCTCGCGTGCCGGAGCTCTGTAA 596
||.|||||.||.|||||.||.||.|....|||.|||||.|||||.||.||
BPUM_2872 502 GGTATTGAGTTCCTTGGTGAGCTTGGAAATCGTGTGCCTGAGCTTTGCAA 551
BSNT_04723___ 597 GGAATATGACGTTGA--CAGAAGCCTTGTCCGCATCATTTGTGTGGAAGC 644
.||.|||||..|||| .|.|||.| ||.||.|||||.|||||.|||||
BPUM_2872 552 AGAGTATGATATTGATCAAAAAGAC--GTACGTATCATCTGTGTAGAAGC 599
BSNT_04723___ 645 AGCGCCGACCGTTTTGCCGGGCTTTGATCCGGAACTTG-TTGATTACGCC 693
.||.||.||.|.|.|.||.||.||.|||||.||| ||| |.||.||.||.
BPUM_2872 600 TGCACCAACAGCTCTTCCAGGATTCGATCCTGAA-TTGATCGACTATGCA 648
BSNT_04723___ 694 GTACATTATCTT-GAGGAAAACGGAGTTGAGTTCAAGATCGGCACGGCTG 742
.|..|.||.||| .|||.||| ||.|||||||||||.||.||.||.||..
BPUM_2872 649 ATGAACTACCTTCAAGGTAAA-GGTGTTGAGTTCAAAATTGGTACAGCGA 697
BSNT_04723___ 743 TACAAGAATGTACCCCGGAAGGAGTCAGAGTCGGCAAAAAAGATGAGGAA 792
|..||||||||||.||.|||||..|||..||.|| ||||||.||.||.
BPUM_2872 698 TCAAAGAATGTACGCCTGAAGGCATCATTGTTGG---AAAAGACGATGAT 744
BSNT_04723___ 793 CCAGAGCAGATCAAATCGCAAACCGTTGTTTGGGCGGCAGGTGTCCGCGG 842
.|.||..|.||||||.|..||||.|||||||||||.||.|||||.|||||
BPUM_2872 745 ACTGAAGAAATCAAAGCTGAAACTGTTGTTTGGGCTGCTGGTGTACGCGG 794
BSNT_04723___ 843 CCATCCGATTGTAGAGGAAGCCGGTTTTGAAAATATGCGCGGCCGGGTGA 892
..|.||.||.||.||.|||||.||.||||||||.|||||||||||.||.|
BPUM_2872 795 TAACCCAATCGTTGAAGAAGCTGGATTTGAAAACATGCGCGGCCGCGTAA 844
BSNT_04723___ 893 AAGTCAACCCTGATCTTCGCGCCCCAGGACATGACAATGTCTTTATTCTC 942
||||....||.||||||||.|..||||.|.||||..||||.||.|||.||
BPUM_2872 845 AAGTTTCTCCAGATCTTCGTGTACCAGAAAATGATGATGTATTCATTATC 894
BSNT_04723___ 943 GGCGACAGCTCGCTGTTTATGAATGAAGATA-CAGAGCGTCCGTATCCGC 991
||.|||.|.||..||.|.||.||||||||.| || |.|||||.||.||.|
BPUM_2872 895 GGTGACTGTTCATTGATCATCAATGAAGAAATCA-ACCGTCCATACCCAC 943
BSNT_04723___ 992 CGACTGCGCAAATTGCAATGCAGCAGGGCATAACGGTCGCTAAAAACCTT 1041
|.|||||.|||||.|||||||||||.||...|||.||.||.|||||||||
BPUM_2872 944 CAACTGCACAAATCGCAATGCAGCAAGGTGAAACAGTAGCGAAAAACCTT 993
BSNT_04723___ 1042 G--GCAGGCTTATTAAGGGCGGAGAGCTTGAGGAA--TTCAAGCCGGACA 1087
| ||| ||..|.||.||.||....||||| || ||.|||||.||||
BPUM_2872 994 GGAGCA--CTAGTGAAAGGTGGTTCTCTTGA--AAGCTTTAAGCCAGACA 1039
BSNT_04723___ 1088 TTAAGGGAACAGTGGCTTCTCTTGGCGAGCATAACGCGGTTGGGGTTGTT 1137
|.||.||||||||.|||||||||||.||.|||.||||.||.||.||||..
BPUM_2872 1040 TCAAAGGAACAGTTGCTTCTCTTGGTGAACATGACGCTGTAGGTGTTGCG 1089
BSNT_04723___ 1138 TATGGCAGAAAGCTGAAAGGCACGCCCGCTTCGTTTATGAAAAAAGTCAT 1187
|.|||.|.|||.||..||||.||....|||||....|||||.|||.|.||
BPUM_2872 1090 TTTGGAAAAAAACTTCAAGGAACAAAAGCTTCAGCAATGAAGAAAATTAT 1139
BSNT_04723___ 1188 TGATAACCGCTCGCTGTTTATGATTGGCGGACTCGGACTGACACTGAAAA 1237
.||.|||||.||..|.||.|||.|||||||||..|||||....|||||||
BPUM_2872 1140 CGACAACCGTTCTTTATTCATGGTTGGCGGACCAGGACTTGTTCTGAAAA 1189
BSNT_04723___ 1238 AAGGCAAGTTCAAGTTTTTCTAA 1260
||||.||.||||||||.||||||
BPUM_2872 1190 AAGGAAAATTCAAGTTCTTCTAA 1212
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