Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04718 and BPUM_2869

See Amino acid alignment / Visit BSNT_04718 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_04718___yuiC.1.24716.seq
#    -bsequence dna-align/BPUM_2869.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04718___yuiC-BPUM_2869.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04718___yuiC-BPUM_2869.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04718___yuiC
# 2: BPUM_2869
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity:     438/722 (60.7%)
# Similarity:   438/722 (60.7%)
# Gaps:         145/722 (20.1%)
# Score: 1219.5
# 
#
#=======================================

BSNT_04718___      1 ATGTTGAATAT-GATCAGACGTTTGCTGATGA----CCTGTTTATTTCTG     45
                     ||| ..||.|| |||.|.|||.|||.|.||||    |||.||||    ||
BPUM_2869          1 ATG-AAAACATGGATGAAACGATTGTTCATGACAGCCCTTTTTA----TG     45

BSNT_04718___     46 CTTG--CATTTGGCACGACATTTTTATCAG---TGTCAGGAATTG----A     86
                     ||||  |.||||.||    |..|||| |.|   |.||.|||.|||    |
BPUM_2869         46 CTTGCTCTTTTGACA----AGCTTTA-CGGGCATATCTGGAGTTGAACCA     90

BSNT_04718___     87 AGCGAAGGACTTGTCAAAATGGGTGCAGGAACATCAGGAAAAGCACTTGA    136
                     ||.||.|.|..||.|    ||||||              ||||       
BPUM_2869         91 AGTGATGTAGCTGCC----TGGGTG--------------AAAG-------    115

BSNT_04718___    137 AGCATGCAGGA--CTGACATTAAAAGCA-------------TTGCAGCAG    171
                        |.|| |||  |||.|     |||||             ||.||.|||
BPUM_2869        116 ---AGGC-GGATCCTGGC-----AAGCAAGTATCTTCTTTTTTCCAACAG    156

BSNT_04718___    172 AAACAAACACAAAC-----CACGTCCGCGGCTGAGGATAAAA--------    208
                     .||.|||.|.||||     ||| ||             ||||        
BPUM_2869        157 CAAAAAAGAGAAACGATGGCAC-TC-------------AAAAGTGATGAG    192

BSNT_04718___    209 -------CTAAACCGTTAGAAGAGGCATTTGATTGGGATGAATATCC--A    249
                            ||||..|..|.|||||.||.|||.|||||.||||.||.||  |
BPUM_2869        193 TTGCGGGCTAATTCTCTCGAAGAAGCGTTTAATTGGAATGATTACCCGAA    242

BSNT_04718___    250 GTCCAAAGAGTAACAGCAACAGGCTACACAGCAGGAGCTGAGTCGACGGG    299
                     |  ||||..||....||.|||||.||.||||||||.|..||.||.||.||
BPUM_2869        243 G--CAAAAGGTTGTTGCCACAGGTTATACAGCAGGTGTGGAATCAACAGG    290

BSNT_04718___    300 CAAA-------AATCCCGGTGATCCATTATACGGGC-TTACATATTCAGG    341
                     .|||       ||..||    ||.|| |||   ||| |||||||||||||
BPUM_2869        291 TAAAACGAAAGAACACC----ATGCA-TAT---GGCATTACATATTCAGG    332

BSNT_04718___    342 TGTGAAAGTGAAACGGGATTTATATTCCACGGTTGCTGCTGACCCGTCCG    391
                     .||.|||||.|||||.|||||||||||.||.||.||.||.|||||.||||
BPUM_2869        333 CGTCAAAGTAAAACGTGATTTATATTCAACTGTGGCGGCGGACCCATCCG    382

BSNT_04718___    392 TTTTCCCGATCGGAACAATTTTATTCATTCCGAACTACGGTCT-CGGCGT    440
                     |.||.||.||.|||||..|..|.||.||.||.|||||.|| || |||.||
BPUM_2869        383 TCTTTCCAATTGGAACGGTGCTCTTTATCCCAAACTATGG-CTACGGAGT    431

BSNT_04718___    441 TGTAGCCGACACAGGATCAGCTATTAAGGG----AAACCGCCTTGATCTG    486
                     .||.||.||.||.|||..|||.|||||.||    ||    .||||||.|.
BPUM_2869        432 GGTCGCAGATACGGGAAAAGCCATTAAAGGTCATAA----GCTTGATTTA    477

BSNT_04718___    487 TACTTTGAGACAGTCAAAGATGTATACAATGAATGGGGCAAAAAAACCCT    536
                     ||||.|||.||.||..|.|||||.||.|..|||||||||||||||...||
BPUM_2869        478 TACTATGAAACCGTAGATGATGTGTATAGAGAATGGGGCAAAAAAGTGCT    527

BSNT_04718___    537 TGATGTATATGTGATTAAAAAGGGAACG--GGAAAGATTACCGAGGATGA    584
                     .|||||.|||||.||.||.|||||  ||  ||||.|.|.||.||..|.||
BPUM_2869        528 CGATGTGTATGTCATCAAGAAGGG--CGAAGGAACGTTAACGGAAAAAGA    575

BSNT_04718___    585 GCTTGAGA--AGCTCAATGAAACAAAATCTTTGCAAGTGTTCAGAAATCA    632
                      ||||| |  ||||.||||||.|||||||..|||||||.|||.|..|.||
BPUM_2869        576 -CTTGA-ACGAGCTGAATGAAGCAAAATCAATGCAAGTATTCCGTCAGCA    623

BSNT_04718___    633 ATATAAAACGGTGAAAGAATAA    654
                     .|.|.||.|....|||||||||
BPUM_2869        624 GTTTCAAGCCAATAAAGAATAA    645


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