Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04692 and BPUM_2858
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence dna-align/BSNT_04692___yukC.1.24716.seq
# -bsequence dna-align/BPUM_2858.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04692___yukC-BPUM_2858.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04692___yukC-BPUM_2858.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04692___yukC
# 2: BPUM_2858
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1512
# Identity: 869/1512 (57.5%)
# Similarity: 869/1512 (57.5%)
# Gaps: 351/1512 (23.2%)
# Score: 2175.0
#
#
#=======================================
BSNT_04692___ 1 ATGTCAGGTAAACAAAAATCATATTTAGAAAACCAATTAGAAGCTGTTGC 50
|||.|||.||||.|.|..||.|||||||||.|.|||||||||||.||
BPUM_2858 1 ATGGCAGATAAAAAGAGTTCCTATTTAGAAGAACAATTAGAAGCAGT--- 47
BSNT_04692___ 51 CGA-GAAAACAGATGCCGGCTA--TACA--TTTACCTTTCAACGGGAAAA 95
|| |||||.|||.|.|||| | |||| ||.|..||||||.|.||.|.
BPUM_2858 48 -GATGAAAAAAGAGGGCGGC-ACCTACAGCTTCATTTTTCAAAGAGAGAC 95
BSNT_04692___ 96 AATAAAGCTTCTCGACGGTCTTGAAGC--TAACGTGATCAAAGATATAAA 143
.||.||.||..|.||||||.|.||||| .|.| |||||||||.||.||
BPUM_2858 96 CATTAAACTCTTAGACGGTTTAGAAGCGGCACC--GATCAAAGACATCAA 143
BSNT_04692___ 144 TCCATTTTTTTATAAAGA-AATCGATGTGACGGATGATGAAGTAATCATC 192
.||.|..|||.|.||||| |.||.|| |.||.||.|||||.||.||.||.
BPUM_2858 144 CCCTTCATTTAAAAAAGAGATTCAAT-TAACTGAAGATGAGGTCATGATT 192
BSNT_04692___ 193 ACAATCCAACCTCCCTCCT-CCTATAAAGCATTCCGCTTCATGAAAGCTA 241
.|.||.||||| .|||||| |||||.|.|.|||.||.|||||..|.||.|
BPUM_2858 193 TCTATTCAACC-GCCTCCTGCCTATCAGGAATTTCGTTTCATCCATGCGA 241
BSNT_04692___ 242 AGGATAAAAAAAGTAAATGGCAGTTTGCCTATCAGCTTGTTCAAGC--CG 289
|||||.|||||||.||||||...|||.|.||.||||||||..|.|| .|
BPUM_2858 242 AGGATGAAAAAAGCAAATGGATTTTTTCATACCAGCTTGTCGATGCAGTG 291
BSNT_04692___ 290 TACAGCAGCACAATCTGTCGAGGCTGAATTTGATTGTCGCTCCTGAAAAC 339
|.|| |.|||.|..||..|.|||||.||...|||||..|||||||||||
BPUM_2858 292 TGCA--AACACGACGTGAAGCGGCTGCATCCTATTGTTTCTCCTGAAAAC 339
BSNT_04692___ 340 ATTGTATTCGATAAAGGGCTTA-CGCCT-TATTTTCTCCATTATGGAGTA 387
|||||.||..||.|| |||||| |.||| .||||| |.|||||.||.||.
BPUM_2858 340 ATTGTTTTTCATCAA-GGCTTAGCTCCTGCATTTT-TGCATTACGGCGTC 387
BSNT_04692___ 388 AAAGAAAGCATTCCTCCTTACG-AGCGTGATGAGGAAAGAGTATGGCAGG 436
|||||||||||.||.||.||.| |.|| ||||||.||.|..||
BPUM_2858 388 AAAGAAAGCATCCCGCCATATGAAACG-GATGAGCAACGTTTA------- 429
BSNT_04692___ 437 AGCTGAAAGCGG---CAGCGG-----CTTTG-GCAGTTGACGGCGCTTTT 477
||.||||.|| .|||.| |||.| |..||.||| |.|..
BPUM_2858 430 --CTAAAAGAGGTCAAAGCCGTCATTCTTCGAGTGGTGGAC----CATGA 473
BSNT_04692___ 478 G----CGTTTGAAGACTACCTGAAATTCAATGAAACGCTCACGTTCTCCG 523
| .||||.||||.||..||...|.||..||||||||.|...|.||.|
BPUM_2858 474 GTACCAGTTTCAAGAATATGTGGCTTACAGCGAAACGCTGAAACTATCTG 523
BSNT_04692___ 524 CAGAGGCAAAGGCGATATTA--GATACTGAATC-CTATGATGATTTGCTC 570
.|..|||||| .||.||.| ||.||..|.|| || .||.||.||| ||
BPUM_2858 524 AATTGGCAAA--AGAAATCAGCGAAACGCAGTCTCT-GGAAGAATTG-TC 569
BSNT_04692___ 571 -GAGCTGATT---CAAATCCATATTGATGAGCTCGAAGCCAAAGCAAAAA 616
|..||.||| |||| |.||.||.|.|.|.|||.|.||||..||||
BPUM_2858 570 TGCCCTCATTCAGCAAA---AGATCGAAGCGATTGAAACGAAAGAGAAAA 616
BSNT_04692___ 617 CATACATACATATCCCGAGAAAGAAGTGGAACATCCAGCGATATATCGGC 666
|.|...||...||.||||.||||||.|||||.|||.|.|||||||||||.
BPUM_2858 617 CGTTATTAACCATTCCGAAAAAGAAATGGAAGATCGAACGATATATCGGA 666
BSNT_04692___ 667 CTGGGGCTCATTGTTTTGCTTGTACCGGCACTTATTTATTC-------GA 709
||.|| |.||||||| |.||||.|||| |.
BPUM_2858 667 CTAGG---------TCTGCTTGT-------CCTATTAATTCCTGCATTGG 700
BSNT_04692___ 710 TGTAC---------GCCTTATTTTTCGCGCAGCCAAAGCACCAGGCGATA 750
||||| .||||.|||||.|||..|||.||.||..|.||| ||
BPUM_2858 701 TGTACACCATTTATACCTTCTTTTTTGCGATGCCGAAACAAGAAGCG-TA 749
BSNT_04692___ 751 -GTGGACAGCAACCGTGCGTTCT-TAAACAAGCAGTACAGTGAAGT---- 794
||||| .||||.|.....||.| |.|||||.||||||||..||||
BPUM_2858 750 TGTGGA-GGCAAACAAATATTATCTCAACAAACAGTACAGCCAAGTGGTG 798
BSNT_04692___ 795 ----CATCAGCACACTGTCCAAGTACGAGGCGGAAAGCC-------TGCC 833
|.|.||.|.|.|.|.| |||| ||||
BPUM_2858 799 GATACGTTAGAAAAATATTC---------------AGCCAATCAAATGCC 833
BSNT_04692___ 834 TGAATCGGTGCAGTATCAGCTGGCGACGTCCTATGTTGAGGTCGA-AAAC 882
.|..||..|.||.|||.|.|||||.|..||.||||| | ||||
BPUM_2858 834 GGTTTCCCTTCAATATGAACTGGCCATTTCGTATGT--------ACAAAC 875
BSNT_04692___ 883 CTGGGGAGTGCAAAAACCAA------------------AAATATAGAAAA 914
|||.||| .||.|||.||||
BPUM_2858 876 -------------AAATCAAGGCAATCTGTTACTCGATCAACATAAAAAA 912
BSNT_04692___ 915 TAACTTAGTCAC-----CCTTCA-AT--CAGAC----CCTCAGCATTTCT 952
.| |.|||| |.|.|| || ||||| ||.||..|||||.
BPUM_2858 913 GA----AATCACAGATACATACACATTGCAGACTGATCCACAATATTTCC 958
BSNT_04692___ 953 TATATTGGATTGATTATGGTAGAGGAGAATA-CAAAGAAGC----GATCA 997
|.|..||||||.| |||.|.|.|.|..|||| |||.||||| ||
BPUM_2858 959 TTTTCTGGATTCA-TATTGGACAAGGCAATAGCAAGGAAGCACTTGA--- 1004
BSNT_04692___ 998 GTATCGGCCGTAAGCTTGAA---------TACAATGATTATATTTACTTT 1038
|||.|..|||...||||.| ||| |||||||| .
BPUM_2858 1005 -TATTGCACGTGTCCTTGGAGACGACCGGTAC-------ATATTTAC--G 1044
BSNT_04692___ 1039 GC--------CCTAGCTAAAT---AT---AAACAG----CAG-CTTTTAT 1069
|| ||||.|..||| || |||| | ||| ||| |
BPUM_2858 1045 GCACTCGTCGCCTATCGCAATGACATTCAAAAC-GATGACAGTCTT---T 1090
BSNT_04692___ 1070 CTGAGGATACAAATGATGAAGATATACAAAAAGAACTTGACTCAGTAAAT 1119
||| || |||||.|.|||||||.|.||.||..| ||.|
BPUM_2858 1091 CTG------CA------GAAGAAAAACAAAAACAGCTAGATCC---AATT 1125
BSNT_04692___ 1120 AGTGAGCTTGAAAAAGCCCAAAAAGAACGTCAAGAAAATAAACAGTCTAA 1169
|.|.|| ||||..|| ||| |.|.|||.|.|||
BPUM_2858 1126 ATTAAG---GAAATGGC-------GAA--TTATGAAGAAAAA-------- 1155
BSNT_04692___ 1170 TTCTGAAACATCGTTAGTCGATACAAGCGAAGAACAGACACAAA------ 1213
||||||.|| ||.||||| |||.||
BPUM_2858 1156 ----GAAACAACG------GAGACAAG-----------CACCAATGACTC 1184
BSNT_04692___ 1214 --CAGACGAAGAAAAACAAGCAGAAGAGAAAGCGGCAGAAGAAAAAGCCG 1261
|||.||..|.||..|||.||||.| ||||.||.|||.||||||
BPUM_2858 1185 CTCAGGCGGCGCAAGCCAAACAGATG---AAGCTGCTGAACAAAAAG--- 1228
BSNT_04692___ 1262 CAGCCGAGGAAAAAGC---------GAAAAAAGAAGAACAGAAGAAAAAA 1302
||| ||..|||||| |||||||| |||||.||
BPUM_2858 1229 -AGC--AGTCAAAAGCTGATCAAGAGAAAAAAG---------AGAAAGAA 1266
BSNT_04692___ 1303 GAAGACGAGAAAAAAGAAA------CAGA--AAAGAAAGATGAGAAAAAA 1344
...||.|.| ||||||||| |||| ||| ||||||||||||
BPUM_2858 1267 TCTGAAGTG-AAAAAGAAAACCTCTCAGACGAAA-AAAGATGAGAAA--- 1311
BSNT_04692___ 1345 GATGACAAATAA 1356
||||||
BPUM_2858 1312 ------AAATAA 1317
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