Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04678 and BPUM_2850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_04678___yueF.1.24716.seq
# -bsequence dna-align/BPUM_2850.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04678___yueF-BPUM_2850.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04678___yueF-BPUM_2850.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04678___yueF
# 2: BPUM_2850
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1187
# Identity: 766/1187 (64.5%)
# Similarity: 766/1187 (64.5%)
# Gaps: 160/1187 (13.5%)
# Score: 2341.5
#
#
#=======================================
BSNT_04678___ 1 TTGTTGAAATCAAAAGTCCATTTTTGGACATTGCAGATTTTATTTGTTTT 50
|||||.|||||.||||||||||||||||||||.||.||.|||.|||||||
BPUM_2850 1 TTGTTAAAATCTAAAGTCCATTTTTGGACATTCCAAATATTACTTGTTTT 50
BSNT_04678___ 51 GCTGATTATTTTTGTAGCAACAAAAGTTTCATTTGTATTTCAGCCGTTTA 100
.||.|||.|.|.||||.|||||||.|||||.|||.|||||||||||.|||
BPUM_2850 51 ACTCATTGTGTATGTATCAACAAAGGTTTCGTTTTTATTTCAGCCGATTA 100
BSNT_04678___ 101 TTGTTTTTATCTCGACATTGTTTTTCCCGATGCTGATTGCGGGAATTTTG 150
||.|.|||...||.||..|||||.||||.||..||.|.|||||.|||.||
BPUM_2850 101 TTTTATTTGCATCAACGCTGTTTGTCCCCATCTTGCTGGCGGGTATTCTG 150
BSNT_04678___ 151 TATTTCATATTTAATCCGGTCGTCCGCCTGCTTG---AAAAAAA------ 191
|.||||||.||||||||..|.||.|| .|..||| ||.||||
BPUM_2850 151 TTTTTCATCTTTAATCCAATTGTTCG-ATTTTTGTCCAAGAAAATCCCTA 199
BSNT_04678___ 192 -AATTC-CGCGGACATTATCCATTCTATTGATCTATTTA----CTGTTTA 235
||.|| ||| ||||| ||||| ||||| |||||.|
BPUM_2850 200 GAACTCTCGC------TATCC-------TGATC-ATTTATCTCCTGTTCA 235
BSNT_04678___ 236 TCGGTTTGCTTGCCTTTATTTCAGCGTCA-----GTCGGACCTATCATCA 280
|.||..|..|..|.||||| ||||| |..||.||..|.||.|
BPUM_2850 236 TTGGACTCATCACGTTTAT-----CGTCAATGCTGCTGGGCCGGTGATTA 280
BSNT_04678___ 281 CCTCACAGGTGACAGGGCTGTTTAACAACCTT-CCTGATTATATAAAACA 329
..||.|||||....||.|| |.|.|.||.||| ||||.||||.|||...|
BPUM_2850 281 TTTCGCAGGTCGGTGGACT-TGTCAAAAGCTTCCCTGGTTATGTAACGGA 329
BSNT_04678___ 330 GATTCAGGCGCTGACAAAGGATTTGTCCCATTCTCAATGGTTTACCTGGA 379
.||.|||....|.|..||.||.||.||.||||||.||...|||||.||||
BPUM_2850 330 CATGCAGAAATTTATCAATGACTTTTCGCATTCTAAAACATTTACTTGGA 379
BSNT_04678___ 380 TGATGAACCAGGATTATGTATCGATATCAAAAATTGAACA----GTCATT 425
||||||.|||.||||||||.||..|.||||||.||||||| |||.||
BPUM_2850 380 TGATGAGCCAAGATTATGTGTCTGTCTCAAAATTTGAACAGACGGTCGTT 429
BSNT_04678___ 426 --GACAAGTTTTCTCCAAAA---CTTGCCGCAAAATATCACGTCCAGTTT 470
|||| || ||| .||.|||.||||.||..|.||.|||.|
BPUM_2850 430 TCGACA----TT-----AAAGGCATTACCGGAAAACATTGCTTCAAGTAT 470
BSNT_04678___ 471 ATCTGCGGTGTTTGGTGTCGTGACAAACATCACGCTTG--TTA----TTA 514
.|||||||||||||||||..|..|.||.| ||| ||| |.|
BPUM_2850 471 GTCTGCGGTGTTTGGTGTGATTGCGAATA------TTGCCTTAGCCGTCA 514
BSNT_04678___ 515 TTACTGTTCCATTTATCCTTTTTTACATGTTGAAAGACGGACACCGCTTT 564
|.||.|||||||||||..|.|||||.|||.||||||||||.||....|||
BPUM_2850 515 TCACCGTTCCATTTATTTTATTTTATATGCTGAAAGACGGGCATAAGTTT 564
BSNT_04678___ 565 C--------CGCATTTGGCAGTAAAAATTCTACC--GGCTTCTTATCGGA 604
| |.|.|| |||| ||.|||| .|| ||||.||.|
BPUM_2850 565 CCAGACAAGCTCGTT---CAGT-----TTTTACCAATGC--CTTACCGCA 604
BSNT_04678___ 605 CAGAA-GGCTTAAAGATTTTTAAAGATTTATCCGATACGCTTGCGGCATA 653
..||| ||||.||| ||.||.|||||.|||..|||.|||||.||.||.||
BPUM_2850 605 AGGAAGGGCTGAAA-ATCTTCAAAGAATTAAACGACACGCTCGCAGCTTA 653
BSNT_04678___ 654 TTTCCAGGGGCAGCTGTTAATCTGTCTTTTTGTCGGAACAGCGTGTTTTA 703
..|.|||||||||.|..|..|||||.|.|||||.|||...||.|||||||
BPUM_2850 654 CATACAGGGGCAGATTATTGTCTGTTTGTTTGTTGGAGTCGCTTGTTTTA 703
BSNT_04678___ 704 TCGG---CTATTTAATTGCCGGACTGCCGTATGCCCTGATTCTTGGGATT 750
|.|| ||..|||||| ||..||...|||||.||.|||||.||.|||
BPUM_2850 704 TTGGATACTTATTAATT---GGTGTGAAATATGCGCTTATTCTCGGTATT 750
BSNT_04678___ 751 GTCATGGCGATTACCAATATCATTCCCTATGTCGGGCCTTTTCTCGGTGC 800
.||||.|||.|.||.|||.|.|||||.||..|.||.||.|.|||.||.||
BPUM_2850 751 ATCATTGCGGTGACAAATGTGATTCCATACCTTGGACCATATCTTGGCGC 800
BSNT_04678___ 801 CGCGCCGGCTG---TCATTGTCGGTTTTATGGACTCGCCGGCCAAAGCGC 847
.||.||.|||| |.||||.| |||.|.||.|||||.|..|||||
BPUM_2850 801 GGCACCTGCTGTACTGATTGCC---TTTCTTGATTCGCCTGGAAAAGC-- 845
BSNT_04678___ 848 TGTTTGCGATTATT----GTGGTCGTCA------TCGTTCAGCAGCTGGA 887
|.||.| |||.|.|||| |.||.|||||..|.||
BPUM_2850 846 --------AGTAGTGACAGTGATTGTCATTCTTGTTGTGCAGCAAATTGA 887
BSNT_04678___ 888 CGGAAACCTGCTGTC--TCCTCTTGTGATC---GGGAAGCGGCTGAATAC 932
|||||| |||| |.|||...||||| ||.||.||.|||||.||
BPUM_2850 888 CGGAAA-----TGTCATTTCTCCATTGATCATTGGAAAACGTCTGAACAC 932
BSNT_04678___ 933 CCATCCGCTTACGATTATTTTGCTGTTAATCGGAGCGGGAAGCTTCGGCG 982
.|||||..|.||.|||||..||.|.|||||.||.||.||||||||.||||
BPUM_2850 933 ACATCCTTTGACCATTATCCTGTTATTAATTGGGGCAGGAAGCTTTGGCG 982
BSNT_04678___ 983 GAATTCTCGGCATGATTTTAGCGGTGCCGGTTTATGCGGTAGTGAAGGCG 1032
|.||.||.|||||||||||.||.|||||.||.||||||.|..|.||.|||
BPUM_2850 983 GCATCCTTGGCATGATTTTTGCAGTGCCTGTCTATGCGCTGCTCAAAGCG 1032
BSNT_04678___ 1033 TTCTTCCTGAATATTGTCCGCTTGATCAAGCTTCGCCAGCGGTCACGACT 1082
.||..|||||||||||||.|.|||.|..||||.||.|||||.||.||
BPUM_2850 1033 ATCACCCTGAATATTGTCAGATTGGTTCAGCTGCGTCAGCGCTCTCG--- 1079
BSNT_04678___ 1083 CGAAGA---------AAACGCAAAGCCAGCTGAATAG 1110
|.|||| |||||...||
BPUM_2850 1080 CAAAGAGCAGCACTTAAACGTCTAG------------ 1104
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