Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04673 and BPUM_2846

See Amino acid alignment / Visit BSNT_04673 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04673___yueI.1.24716.seq
#    -bsequence dna-align/BPUM_2846.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04673___yueI-BPUM_2846.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04673___yueI-BPUM_2846.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04673___yueI
# 2: BPUM_2846
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 445
# Identity:     269/445 (60.4%)
# Similarity:   269/445 (60.4%)
# Gaps:          83/445 (18.7%)
# Score: 656.0
# 
#
#=======================================

BSNT_04673___      1 TTGAGTGAAGACAAAATGGATC--------TCTATTTGCAGCAAGGAATG     42
                     .|||..|||||        |||        |.||||||||||||||.||.
BPUM_2846          1 ATGAAAGAAGA--------ATCCGTAGACTTTTATTTGCAGCAAGGGATA     42

BSNT_04673___     43 TATGGGCCTTTGGAGACAAAGCCTGACGAGCGCCATTTGTTTTTAGGCTC     92
                     |.|||.|.|...||.|||||.||.||.||.||.....|||||.|.||.||
BPUM_2846         43 TTTGGACATGCTGAAACAAAACCCGATGAACGAAGAATGTTTCTCGGTTC     92

BSNT_04673___     93 TTTAAGAGAAAGAGTCG-TTTTGGCACTGACGAAAGGACAGGTGCTTA-G    140
                     .|||||||||.||| || ||.|.||.|||||.||.|||||||| .|.| |
BPUM_2846         93 ATTAAGAGAACGAG-CGCTTCTTGCCCTGACAAAGGGACAGGT-ATCACG    140

BSNT_04673___    141 AAGCAAACCGTATAAAGAGGCGGAGCACGAG-CTGAAA----AACAGCCA    185
                     ||..|||||||||.||||||..||  ||.|| .|.|||    |||.||||
BPUM_2846        141 AAATAAACCGTATCAAGAGGTCGA--ACAAGTATTAAAGGCCAACCGCCA    188

BSNT_04673___    186 TAACGTCACCCTTTTGGTT--AATGGAGAGCT-TCAGTATCAGTCTTACT    232
                         ||| |.||.||..||  |||||.|||.| || .|||...|||||.|
BPUM_2846        189 ----GTC-CACTGTTCTTTTAAATGGTGAGTTGTC-CTATGCTTCTTATT    232

BSNT_04673___    233 CTCCTTATATCCAAATGGCGAA--CCGGTACGG--AGTGCCCTTCAAGAT    278
                     |||..|||.|..|||||||.||  |||   |||  .||.||.||.||| |
BPUM_2846        233 CTCAGTATGTGAAAATGGCTAATGCCG---CGGGATGTTCCTTTAAAG-T    278

BSNT_04673___    279 --TGTATCTGATCTTCAGTTTCATACGCCTTTAGGCCTCGTTATTGCGGC    326
                       ||.|||  |||.|.||...|||.|.|||||.||.||.||.||.| .||
BPUM_2846        279 GGTGAATC--ATCATGAGGCACATTCTCCTTTTGGTCTTGTGATAG-AGC    325

BSNT_04673___    327 TGAC--ATCGCTGTGAATCGTGA----ATTGATATATA-----------T    359
                     ||.|  || ||.||.||||..||    ||..|||||.|           |
BPUM_2846        326 TGCCGAAT-GCGGTCAATCAAGAGCACATCTATATAGAAGATGAGCTGTT    374

BSNT_04673___    360 TCAGGACGACATTT-----ATAATCGGTCAGTGCTGAAATCTTAA    399
                     ||| .|.|.|.|||     |.||||      ||.||||    ||.
BPUM_2846        375 TCA-AAAGGCTTTTTCTCAAGAATC------TGTTGAA----TAG    408


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