Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04666 and BPUM_2840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04666___comQ.1.24716.seq
# -bsequence dna-align/BPUM_2840.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04666___comQ-BPUM_2840.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04666___comQ-BPUM_2840.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04666___comQ
# 2: BPUM_2840
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1034
# Identity: 565/1034 (54.6%)
# Similarity: 565/1034 (54.6%)
# Gaps: 280/1034 (27.1%)
# Score: 1343.5
#
#
#=======================================
BSNT_04666___ 1 ---------------------------ATGAAGGAGATTGTGGATGAAAA 23
||.|||.|||.|.||..|||...
BPUM_2840 1 ATGCTAAACTATCTAGAGAATACAAAAATCAAGCAGAATATGTCTGATTT 50
BSNT_04666___ 24 TATTTTAAATG------------AGGACTTAAAAGTGAAGCT-------- 53
||||..|.||| ||||.|||.|| |||||
BPUM_2840 51 TATTCAACATGCAGTCAGGCAGAAGGATTTACAA---AAGCTGCTTCTAG 97
BSNT_04666___ 54 CATTT-CTTTTATCAAAGAAAAAAAACAATTTTCATTTGCAGAACTGGCT 102
.|||| ||..||| |||.||..|||||.|.||||...||.|.|||
BPUM_2840 98 AATTTACTGATAT------AAAGAATGAATTTCCCTTTGGGCAATTAGCT 141
BSNT_04666___ 103 TATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTT 152
||..|.|||||....|||||||..||..||.|| ||||||..|| ||
BPUM_2840 142 TACAAGCATTATGAGGCATTTGGCGGGCAAGAC----AAGCAAGCGA-TT 186
BSNT_04666___ 153 -----ATTGGCGTCAGGTATAGAACTTTTAATTTTATCTGCGGACATTTT 197
||||||..||||.||.||||||.|.||.|||||.||.||.||.||
BPUM_2840 187 ACACAATTGGCAGCAGGGATTGAACTTCTCATCTTATCAGCCGATATATT 236
BSNT_04666___ 198 TGACGATATTGAGGATAAGGA-CAATCTTCAGGCTTCTTGGATGA--AAT 244
.||.||||||||.|||.|||| .||..||| |..|.||||||||| ..|
BPUM_2840 237 AGATGATATTGAAGATCAGGATAAAGATTC-GTATCCTTGGATGAGGTGT 285
BSNT_04666___ 245 TAGATC---CTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTA 291
.|||.| .|| ||.|..||.||.||.|..|..||||.|.||||.
BPUM_2840 286 CAGAGCGGAGTT-----GCGATGAATGCGGCAAATGTTCTTTTTGCATTG 330
BSNT_04666___ 292 AGTCTGCAAGTAATAGGTTCAGTCT----CAA-----ATCATCCAA---A 329
|| || |.|| ||||| .|| |||||.||| |
BPUM_2840 331 AG-CT--------TTGG---AGTCTTTTCGAAGCTTGATCATGCAACGGA 368
BSNT_04666___ 330 ACTTTTAAGCCTTACTTTGCAATATTC--ACTC----CAATCTTTACAAG 373
.|||.||| ||..|| .|||||| |.|| ||.||..|.||||
BPUM_2840 369 GCTTATAA-----ACAGTG-TATATTCCTATTCCATTCAGTCAATGCAAG 412
BSNT_04666___ 374 GACAACATGTAGATTTGAATTTAAC-----AGCC------TCATCAGAAT 412
||||.| |||||.||.|.|| |||| |.|.|||.||
BPUM_2840 413 GACAGC------ATTTGGATATGACAGTGGAGCCGGAAAATGAGCAGGAT 456
BSNT_04666___ 413 CAGAGTATATTGAAAT-------GATTAAACTTAAGTCGGGTTCTCTGGT 455
|.||.|||| ||||| |||.|.||.||.|||.|
BPUM_2840 457 -------TGTTTAAATATCATGAGATTA-----AAGGCAGGATCACTGTT 494
BSNT_04666___ 456 AACATTGCCCAGTATTCTTGGTGTATATC-TGGCAACTGGAGAATATAAT 504
....||.|||.||||..|.||.|| |||| ||||||| ||..|.|..|
BPUM_2840 495 TGTGTTACCCTGTATGTTAGGGGT-TATCTTGGCAAC---AGGTTCTTTT 540
BSNT_04666___ 505 GAAACA----GTTGAGGAGTATTCACGTTATT---TAGGTATAGTCGAGC 547
|||| | ||.||.||.|||.| ||||| ||||.||.|..||.|
BPUM_2840 541 GAAA-AGAAGGTAGAAGAATATGC---TTATTACCTAGGAATGGCGGAAC 586
BSNT_04666___ 548 AAATTGCAAATGATCACTAT---GGACTTTATTACCCTAACTATAA---T 591
|..|||.||||| ||||| ||.||||.|.| |||..|||| |
BPUM_2840 587 AGCTTGAAAATG---ACTATCTAGGTCTTTTTAA---TAAAGATAATATT 630
BSNT_04666___ 592 GACTTCAAAA-----CTAGACAT--ACGCTTGCCTTCAATTATCTTAAAA 634
|||||.|||| | |.|||| .||||.| .||||.|.||||
BPUM_2840 631 GACTTTAAAAGAATGC-AAACATTACCGCTAG------TTTATTTGAAAA 673
BSNT_04666___ 635 ATAAATTTAACCAATCATCAATT---GACTTATTAAATTTTTATGCGCAA 681
||.|.|||||.| ||||.|.| |||||..|.|.||.||.|
BPUM_2840 674 ATGAGTTTAATC---CATCTAGTTCAGACTTGCTCAGTTATTTT------ 714
BSNT_04666___ 682 GAAAATCATATGATAAATAATTTG------------GAAGATTTGAAGGG 719
.|||||.|.||||| | |||||.||.||||.
BPUM_2840 715 --CAATCAAAGGATAA-------GAGCGTCGGCTCTGAAGAATTAAAGGA 755
BSNT_04666___ 720 AAAGTTAAGAG-AATCAGGTG-TAATACAATATTTGAATGTTAT-AAAAA 766
.||.|||| || ||||||||| |.| |||||||.|...|.|||| |.|||
BPUM_2840 756 TAAATTAA-AGAAATCAGGTGCTCA-ACAATATGTATTTATTATGAGAAA 803
BSNT_04666___ 767 ATTTAGCAGTGGAAAAT---TTTAAGGAATCATTCAAAAAACTGAGA-TT 812
..||..||| |||| |.|||.|||.|.|||||.||||| |.| ||
BPUM_2840 804 CCTTCTCAG----AAATAAGTGTAAAGAAGCGTTCAAGAAACT-ACATTT 848
BSNT_04666___ 813 AGA----TGAACAAAGAAAAAA-TAAATTACT-TATTCAATTATTAAGGG 856
||| |.||.|||||||||| |.| |||| |.||.|||| ||
BPUM_2840 849 AGAGGCTTCAAAAAAGAAAAAACTGA--TACTCTTTTTAATT------GG 890
BSNT_04666___ 857 GGAT--------TTAA------------------ 864
.||| |.||
BPUM_2840 891 AGATGGAGAAGATGAAAATTCAGGAATTGGTTAG 924
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