Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04660 and BPUM_2836
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04660___yuxO.1.24716.seq
# -bsequence dna-align/BPUM_2836.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04660___yuxO-BPUM_2836.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04660___yuxO-BPUM_2836.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04660___yuxO
# 2: BPUM_2836
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity: 253/408 (62.0%)
# Similarity: 253/408 (62.0%)
# Gaps: 42/408 (10.3%)
# Score: 652.5
#
#
#=======================================
BSNT_04660___ 1 ------ATGA-TGGATACGAAACACACATTGCTTGAAGCGCTTGGTATAG 43
.||| ||||| .|||.|||| |||||||.||.||.||.||.|
BPUM_2836 1 ATGGAAGTGAGTGGAT--CAAATACAC--TGCTTGAGGCACTGGGGATTG 46
BSNT_04660___ 44 AGATTGTTGAAAACACAGCGGAACGA-------TGCGTTGCGGTCATGCC 86
||||||| |.||.|.||.|| |||||.|||...|||||
BPUM_2836 47 AGATTGT-------AGAGTGTAATGAGTCTAGGTGCGTAGCGACAATGCC 89
BSNT_04660___ 87 GGTGGATCATCGGACGGTGCAGCCGTTCGGATATTTGCATGGGGGCGCTT 136
.||.||.||..|.||....|||||.||.|||....||||.||.||.||.|
BPUM_2836 90 AGTCGACCACAGAACAAAACAGCCTTTTGGACTGCTGCACGGAGGTGCAT 139
BSNT_04660___ 137 CAGTGGCCCTGGCGGAAACAGCGGCGAGCGCAGGTGC-ACAGAACCTGAT 185
|.|..||.||.||.|||||||.|||.|||...||.|| .|.| ||.||
BPUM_2836 140 CTGCTGCTCTAGCAGAAACAGTGGCAAGCATGGGGGCTGCGG---CTCAT 186
BSNT_04660___ 186 TGATCATTCAACACAG---GCTTGTGTC--GGTTTGGAGATTAACGCCAA 230
|.| .|.|.|||.||| |.||| .|| ||.|| ||.||.||.|||||
BPUM_2836 187 TTA-GACTTAACTCAGCAAGTTTG-CTCAGGGATT-GAAATCAATGCCAA 233
BSNT_04660___ 231 CCATTTAAAATCTGTAAAGGAAGGAACGGTAAAGGCGATAGCCGAGCCCG 280
.||.||||||||||||...||.|||...||.|..||||..||.|..||.|
BPUM_2836 234 TCACTTAAAATCTGTACGTGATGGAGTAGTGACAGCGACGGCTGTTCCTG 283
BSNT_04660___ 281 TTCATATCGGCAGAACG-ACGATTGTCTATCACATTCACATATATGACGA 329
|.|||.|.||..| .|| ||.||.||.|.|||.|||.|.||..|.||.||
BPUM_2836 284 TACATGTAGGGCG-CCGTACAATGGTATTTCAAATTGATATTAAAGATGA 332
BSNT_04660___ 330 GCAAGAGAGGCTGATCTGTATATCCAGATGCACGCTGGCTGTCATCAA-- 377
.|.|||..|||..|||||||..||.||||||||.||.||.|||||..|
BPUM_2836 333 TCGAGACCGGCACATCTGTACGTCAAGATGCACACTTGCAGTCATTGATC 382
BSNT_04660___ 378 -GAAATAA 384
.|.||||
BPUM_2836 383 GCATATAA 390
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