Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04656 and BPUM_2833
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04656___mrpE.1.24716.seq
# -bsequence dna-align/BPUM_2833___mrpE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04656___mrpE-BPUM_2833___mrpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04656___mrpE-BPUM_2833___mrpE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04656___mrpE
# 2: BPUM_2833___mrpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 500
# Identity: 345/500 (69.0%)
# Similarity: 345/500 (69.0%)
# Gaps: 43/500 ( 8.6%)
# Score: 1105.5
#
#
#=======================================
BSNT_04656___ 1 ATGGCTTTTCAAATTTTATTAAATGTGTTTCTCGCTTTTTGCTGGATGTT 50
|||||.||||||||.||||||||.|...|.|||||.|||..||||||||
BPUM_2833___m 1 ATGGCCTTTCAAATATTATTAAACGCTCTCCTCGCCTTTACCTGGATGT- 49
BSNT_04656___ 51 CTTAAGCA----ACAGTCCAAGCGCCGCAGGCTTCATTACAGGCTATATT 96
|||.|.| |||..| ||.||.||||.|||..|..||||||.|.|.
BPUM_2833___m 50 -TTATGAATGATACATAC--AGAGCAGCAGACTTTGTATCAGGCTTTGTA 96
BSNT_04656___ 97 CTGGGAATGCTCTCTCTCTTT-TTCTTCCGGCGCTTTTTCACTCGCCAGT 145
||.||.|||.||.|..|.||| |.||| |||||.||||||.|||..|..|
BPUM_2833___m 97 CTAGGGATGGTCGCCATTTTTATGCTT-CGGCGATTTTTCCCTCAGCGTT 145
BSNT_04656___ 146 TTTA--TCTATG--------GAAATTGATTTCTATCATCAAGCTCTGT-T 184
|||| .||||| |.|||| ||| |||||| || |
BPUM_2833___m 146 TTTACGGCTATGCCCTTTATGCAATT--TTT--------AAGCTC-GTCT 184
BSNT_04656___ 185 TCATTTTTATAAAGGAACTGTACCTTGCCAATGTCAGTGTGATGAAA-TC 233
|.||.|||||...|||..||...|||||||||.|.||||| ||.||| .|
BPUM_2833___m 185 TGATATTTATTCGGGAGTTGCTTCTTGCCAATTTAAGTGT-ATTAAAGAC 233
BSNT_04656___ 234 AGTCTTATCTCCAAAACTGAATATCAGACCGGGTATTTTTGCTTTTAAAA 283
.||.||.||||||||.||.|..||.|..||.||||||||.||||||...|
BPUM_2833___m 234 TGTATTGTCTCCAAAGCTCACCATTAAGCCCGGTATTTTCGCTTTTCGTA 283
BSNT_04656___ 284 CTGAACTGACGAAGGACTGGGAAATCACCCTGCTTTCTCTGCTCATTACA 333
|.||..|||..|.|||.||||||||.|.|.|.||||||....|.||||||
BPUM_2833___m 284 CGGACTTGAAAACGGATTGGGAAATTAGCATCCTTTCTAACATGATTACA 333
BSNT_04656___ 334 TTAACGCCGGGAACCTTGGTGATGGATATTTCAGATGACAGAACAATACT 383
||.||.||.||.||..||||.||.||||||||.|||||..|..|.|| |
BPUM_2833___m 334 TTGACACCAGGTACGCTGGTCATAGATATTTCTGATGATCGGTCGAT--T 381
BSNT_04656___ 384 TTAT--ATTCATGCAATGGATATCGAGGATGCGGAAAAAGCGATTTTTGA 431
|||| |||||||||||||||||.||.|||||.||||||||.|||..|||
BPUM_2833___m 382 TTATACATTCATGCAATGGATATTGAAGATGCAGAAAAAGCCATTCATGA 431
BSNT_04656___ 432 CATTCGGGAGTCATTTGAAAAAGCCATACAGGAGGTGAGCCGGTGA---- 477
.|||||||..||||||||||||||.||.||||||||||| .|||.|
BPUM_2833___m 432 TATTCGGGTTTCATTTGAAAAAGCGATTCAGGAGGTGAG-TGGTAAGTAA 480
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