Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04655 and BPUM_2832

See Amino acid alignment / Visit BSNT_04655 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:26
# Commandline: needle
#    -asequence dna-align/BSNT_04655___mrpD.1.24716.seq
#    -bsequence dna-align/BPUM_2832___mrpD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04655___mrpD-BPUM_2832___mrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04655___mrpD-BPUM_2832___mrpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04655___mrpD
# 2: BPUM_2832___mrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity:    1058/1557 (68.0%)
# Similarity:  1058/1557 (68.0%)
# Gaps:         135/1557 ( 8.7%)
# Score: 3291.5
# 
#
#=======================================

BSNT_04655___      1 ATGATCAACATGAATAATTTTGTTATTTTGCCAATCCTGATCCCGCTTTT     50
                     |||||||.||||||||||.|.||.||..|||||||..|.||.||..|.||
BPUM_2832___m      1 ATGATCAGCATGAATAATCTCGTGATCCTGCCAATTTTAATACCATTATT     50

BSNT_04655___     51 GTCGGCTATTCTTCTGATTTTCATGACGAAGAACCTTATGCTCATGAGAA    100
                     ..|.||||..||..||||.||.||||..||||||.|..|||||...|||.
BPUM_2832___m     51 AGCTGCTACACTATTGATCTTTATGAATAAGAACATCCTGCTCTCAAGAG    100

BSNT_04655___    101 TCTTCAGCACG---GCGGCA---TCGGCCA---TCGGGATTGTG-ATTAG    140
                     .|||.||...|   ||..||   ||.||||   ||.|.|.|||| |||  
BPUM_2832___m    101 GCTTTAGTGTGTTTGCTTCACTCTCAGCCATTGTCTGCAATGTGTATT--    148

BSNT_04655___    141 CGGCATACTTGTACAGACTGTCTTCACAAAAGGTATCCAGACACTCAGCT    190
                             |.||.||.||..||||.||.|..||.||.||.||.|||...|
BPUM_2832___m    149 --------TAGTCCAAACCATCTTTACTAGCGGGATTCAAACCCTCTATT    190

BSNT_04655___    191 TAGGCGGCTGGAAAGCGCCGTACGGCATTGTGCTTGCCGCAGACCAATTC    240
                     ||||.||.||||||||.||.|..||.||||..||||..||.||.|||||.
BPUM_2832___m    191 TAGGAGGTTGGAAAGCACCATTTGGGATTGCCCTTGTAGCCGATCAATTT    240

BSNT_04655___    241 GCCAGC-CTGCTCGTTCTCACAACAGCGATCATCGGTTTATTG---GTTG    286
                     | |.|| ||.||.||.||.||..|..|..||.||||..||.||   ||| 
BPUM_2832___m    241 G-CTGCGCTCCTTGTACTGACCGCTTCCGTCGTCGGGCTAGTGACAGTT-    288

BSNT_04655___    287 GGCTTTATTCCTTCCGTTCTGTCGGT-------GAAAAACGGGAGC-GCT    328
                       ||||..||||    |||...||.|       |||||   ||||| |||
BPUM_2832___m    289 --CTTTTCTCCT----TTCAAACGATTGGGAAGGAAAA---GGAGCGGCT    329

BSNT_04655___    329 CCTTTTACTACTCCGGCGTTCAGTTCTTGCTTGCCGGCGTCAGCGGAGCG    378
                      .||.||.|||||.|||||.||.||.|||.|.||.|||||.||.||.||.
BPUM_2832___m    330 -GTTCTATTACTCTGGCGTGCAATTTTTGTTAGCTGGCGTAAGTGGTGCC    378

BSNT_04655___    379 TTTTTAACAGGCGATTTATTTAATATGTACGTATTTTTTGAGCTTCTGCT    428
                     ||.||||||||.|||.|.||.||..|||..|||||.|||||.||.|||||
BPUM_2832___m    379 TTCTTAACAGGTGATATTTTCAACCTGTTTGTATTCTTTGAACTGCTGCT    428

BSNT_04655___    429 TATTGCTTCCTATATGCTGATTGTATTAGGCGGTACAAAAATTCAGCTGC    478
                     .||.||.||.||.|||||.|||||..|.||.||..|||||...|||||.|
BPUM_2832___m    429 AATGGCATCATACATGCTCATTGTGCTGGGTGGATCAAAACCGCAGCTTC    478

BSNT_04655___    479 TGGAATCCCTTAAATATATCGTGTTTAATATCGTATCGTCTGCCCTGTTT    528
                     ..|||||.||.|||||.||.||.|||||||||.|.||.||.||..|.|||
BPUM_2832___m    479 GAGAATCGCTCAAATACATTGTATTTAATATCATCTCATCGGCTTTATTT    528

BSNT_04655___    529 GTCATAGGGGTCGGCTT-TTTATACGCTGTAACCGGCACGTTAAACATGG    577
                     .||.|.||.||| |||| ||||||.||.||.||.||.||..|.||.||||
BPUM_2832___m    529 ATCGTCGGTGTC-GCTTGTTTATATGCAGTCACTGGTACACTGAATATGG    577

BSNT_04655___    578 CGGATCTTAGCGTGAAAATCAGC-GAAACAGGACAAACCGGGCTGATCAC    626
                     |.|||.|.||.||.||.|| .|| |||.||||.|||||.||..|.|||||
BPUM_2832___m    578 CTGATTTAAGTGTAAAGAT-TGCTGAATCAGGGCAAACAGGATTAATCAC    626

BSNT_04655___    627 TGTGATTGGTGTCC-------TGATGCTTTTGGTATTTGGCATGAAGGGC    669
                     |||.|||    |||       |.|||.||   ||.||||||.|.||.|..
BPUM_2832___m    627 TGTTATT----TCCATTCTGTTCATGATT---GTGTTTGGCTTAAAAGCT    669

BSNT_04655___    670 GGAATCTTCCCCCTCTACTTTTGGCTTCCAGGCTCTTATTACGCGCCACC    719
                     |||||||||||.||.||.||.|||||.|||||.||.|||.|.||.||.||
BPUM_2832___m    670 GGAATCTTCCCGCTTTATTTCTGGCTGCCAGGATCATATCATGCACCGCC    719

BSNT_04655___    720 GGCGGCAATCTCCGCGTTGTTCGGCGCTTTGCTGACAAAAGTCGGGTTAT    769
                     .|||||.||.|||||..|.||.||.||||||||.|||||.||.||.||||
BPUM_2832___m    720 AGCGGCGATTTCCGCTCTATTTGGTGCTTTGCTCACAAAGGTTGGCTTAT    769

BSNT_04655___    770 ATTCGATTGCGAGGGTTTTCACATTGATTTTTATTCACGATACAGCCTTT    819
                     ||.|||||||.||.||.||.|||||.||||||||.||||||||||..||.
BPUM_2832___m    770 ATGCGATTGCCAGAGTCTTTACATTAATTTTTATACACGATACAGGGTTC    819

BSNT_04655___    820 ACCCAT-CAGCTGATGATTTGGCTGGCGGCGCTGACTGTGATTTTCGGTG    868
                     |||||| || ||.|||...|||||.||.||.|||||.|||||.||.||||
BPUM_2832___m    820 ACCCATACA-CTTATGGCGTGGCTAGCCGCACTGACGGTGATATTTGGTG    868

BSNT_04655___    869 TGATCGGTTCACTCGCTTATTCGAATGT-CATGAAA-ATTGTGATCTATA    916
                     ||||.||.||||||||.|||||..|||| ||  ||| ||.||||||||||
BPUM_2832___m    869 TGATAGGCTCACTCGCCTATTCCGATGTGCA--AAAGATAGTGATCTATA    916

BSNT_04655___    917 ACATTATTACCGCTGTCGGCGTGATTTTGTTCGGTGTAGCAG----TACA    962
                     |||||.|.||.||.||.||.||.||||||||.||..|.||||    ||||
BPUM_2832___m    917 ACATTGTCACAGCCGTTGGGGTCATTTTGTTTGGCATTGCAGCCAATACA    966

BSNT_04655___    963 CACCCCCGCATCCATTCAGGGCGCGATCTACTATCTGATTCACGATATGC   1012
                         |||||.||..|.||.||.||.||.||||||||.|||||.||.|||.
BPUM_2832___m    967 ----CCCGCCTCACTCCAAGGTGCCATTTACTATCTCATTCATGACATGG   1012

BSNT_04655___   1013 TGATTAAGGGCGCTTTGTTTATGCTGGCGGGTACGCTGATCGCATTG---   1059
                     ||||.||.||||||||.|||||||||||.|||.|.|| ||    |||   
BPUM_2832___m   1013 TGATCAAAGGCGCTTTATTTATGCTGGCAGGTGCACT-AT----TTGTGT   1057

BSNT_04655___   1060 --ACTGGAACTGCGA----ACCTGCATAAAATGGGCGGGCTGA-TCAA--   1100
                       .||||.||    |    ||.||.|.||.||||||||.|||| ||||  
BPUM_2832___m   1058 ATGCTGGCAC----AAATCACTTGAAAAAGATGGGCGGACTGATTCAATC   1103

BSNT_04655___   1101 -ACGCTATCCTGTTCTTGGATGGATGTTTTTCATTTCTGCTATTTCTCTT   1149
                      |.||   ||| |.||.||.||||||||||||||.||.|||.|.|||||.
BPUM_2832___m   1104 TAAGC---CCT-TACTAGGGTGGATGTTTTTCATATCGGCTTTATCTCTA   1149

BSNT_04655___   1150 GCAGGCATTCCGCCACTGAGCGGATTTGTCGGCAAATTTAAA-ATTGCGG   1198
                     |||||.||.||.||.|||||.||.|||||.|| |||.||||| ||||..|
BPUM_2832___m   1150 GCAGGTATCCCACCTCTGAGTGGGTTTGTTGG-AAAGTTAAAGATTGTAG   1198

BSNT_04655___   1199 AGGGCGGCTTCGCAGAAGGTGA------ATTTACGATATCCATGCTGATT   1242
                     |.||||||||..|.|..|||.|      .|||.|  |||||.||     |
BPUM_2832___m   1199 AAGGCGGCTTTTCTGCTGGTTACATGACCTTTTC--TATCCTTG-----T   1241

BSNT_04655___   1243 C-TGCTTTCAAGTCTGCTCGTACTGTACTCTGTGCTGAGGATCTTTATAC   1291
                     | |.||.||.||.||.||.||.||.||.||..|..|||||||.||.|..|
BPUM_2832___m   1242 CTTACTGTCCAGCCTTCTTGTCCTTTATTCCATTATGAGGATTTTCACGC   1291

BSNT_04655___   1292 ATGCGTTTTGGGGCGAAGAAAAAGAAACGCCAA-AACCAAATCATCGAAC   1340
                     ..||.|||||||||||.|||.||||.|||..|| ||..|||.|.||||  
BPUM_2832___m   1292 TCGCATTTTGGGGCGAGGAACAAGATACGAGAAGAAGGAAACCGTCGA--   1339

BSNT_04655___   1341 AGCTAAAGGACTTCTTTATCC-GGC----AGCTATTTTTCTCTTGCTGTC   1385
                       .|||||||.|..|.||.|| |||    .|||..|..|||     ||||
BPUM_2832___m   1340 --TTAAAGGAATGGTGTACCCTGGCGTAATGCTTGTGATCT-----TGTC   1382

BSNT_04655___   1386 TCTTCTCTTCGGATTGGGTACAGAATGGGTGTCGCCTTACGTTGATCAAG   1435
                     .|||..|.|.||.||.||.|||||||...|.||.|||||..||.||||||
BPUM_2832___m   1383 ACTTGCCATTGGGTTAGGGACAGAATTCATTTCCCCTTATATTAATCAAG   1432

BSNT_04655___   1436 CGGCCGAGACGCTGCTGAA-TCCGGAAAAATATATCGAAGCTGTTCTGAA   1484
                     |.||.||.|.||| ||.|| .||.|||||||||||..|||||||.|||||
BPUM_2832___m   1433 CTGCGGAAATGCT-CTCAACACCAGAAAAATATATTCAAGCTGTGCTGAA   1481

BSNT_04655___   1485 GGAGTAG   1491
                     |||||||
BPUM_2832___m   1482 GGAGTAG   1488


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.