Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04655 and BPUM_2832
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_04655___mrpD.1.24716.seq
# -bsequence dna-align/BPUM_2832___mrpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04655___mrpD-BPUM_2832___mrpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04655___mrpD-BPUM_2832___mrpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04655___mrpD
# 2: BPUM_2832___mrpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 1058/1557 (68.0%)
# Similarity: 1058/1557 (68.0%)
# Gaps: 135/1557 ( 8.7%)
# Score: 3291.5
#
#
#=======================================
BSNT_04655___ 1 ATGATCAACATGAATAATTTTGTTATTTTGCCAATCCTGATCCCGCTTTT 50
|||||||.||||||||||.|.||.||..|||||||..|.||.||..|.||
BPUM_2832___m 1 ATGATCAGCATGAATAATCTCGTGATCCTGCCAATTTTAATACCATTATT 50
BSNT_04655___ 51 GTCGGCTATTCTTCTGATTTTCATGACGAAGAACCTTATGCTCATGAGAA 100
..|.||||..||..||||.||.||||..||||||.|..|||||...|||.
BPUM_2832___m 51 AGCTGCTACACTATTGATCTTTATGAATAAGAACATCCTGCTCTCAAGAG 100
BSNT_04655___ 101 TCTTCAGCACG---GCGGCA---TCGGCCA---TCGGGATTGTG-ATTAG 140
.|||.||...| ||..|| ||.|||| ||.|.|.|||| |||
BPUM_2832___m 101 GCTTTAGTGTGTTTGCTTCACTCTCAGCCATTGTCTGCAATGTGTATT-- 148
BSNT_04655___ 141 CGGCATACTTGTACAGACTGTCTTCACAAAAGGTATCCAGACACTCAGCT 190
|.||.||.||..||||.||.|..||.||.||.||.|||...|
BPUM_2832___m 149 --------TAGTCCAAACCATCTTTACTAGCGGGATTCAAACCCTCTATT 190
BSNT_04655___ 191 TAGGCGGCTGGAAAGCGCCGTACGGCATTGTGCTTGCCGCAGACCAATTC 240
||||.||.||||||||.||.|..||.||||..||||..||.||.|||||.
BPUM_2832___m 191 TAGGAGGTTGGAAAGCACCATTTGGGATTGCCCTTGTAGCCGATCAATTT 240
BSNT_04655___ 241 GCCAGC-CTGCTCGTTCTCACAACAGCGATCATCGGTTTATTG---GTTG 286
| |.|| ||.||.||.||.||..|..|..||.||||..||.|| |||
BPUM_2832___m 241 G-CTGCGCTCCTTGTACTGACCGCTTCCGTCGTCGGGCTAGTGACAGTT- 288
BSNT_04655___ 287 GGCTTTATTCCTTCCGTTCTGTCGGT-------GAAAAACGGGAGC-GCT 328
||||..|||| |||...||.| ||||| ||||| |||
BPUM_2832___m 289 --CTTTTCTCCT----TTCAAACGATTGGGAAGGAAAA---GGAGCGGCT 329
BSNT_04655___ 329 CCTTTTACTACTCCGGCGTTCAGTTCTTGCTTGCCGGCGTCAGCGGAGCG 378
.||.||.|||||.|||||.||.||.|||.|.||.|||||.||.||.||.
BPUM_2832___m 330 -GTTCTATTACTCTGGCGTGCAATTTTTGTTAGCTGGCGTAAGTGGTGCC 378
BSNT_04655___ 379 TTTTTAACAGGCGATTTATTTAATATGTACGTATTTTTTGAGCTTCTGCT 428
||.||||||||.|||.|.||.||..|||..|||||.|||||.||.|||||
BPUM_2832___m 379 TTCTTAACAGGTGATATTTTCAACCTGTTTGTATTCTTTGAACTGCTGCT 428
BSNT_04655___ 429 TATTGCTTCCTATATGCTGATTGTATTAGGCGGTACAAAAATTCAGCTGC 478
.||.||.||.||.|||||.|||||..|.||.||..|||||...|||||.|
BPUM_2832___m 429 AATGGCATCATACATGCTCATTGTGCTGGGTGGATCAAAACCGCAGCTTC 478
BSNT_04655___ 479 TGGAATCCCTTAAATATATCGTGTTTAATATCGTATCGTCTGCCCTGTTT 528
..|||||.||.|||||.||.||.|||||||||.|.||.||.||..|.|||
BPUM_2832___m 479 GAGAATCGCTCAAATACATTGTATTTAATATCATCTCATCGGCTTTATTT 528
BSNT_04655___ 529 GTCATAGGGGTCGGCTT-TTTATACGCTGTAACCGGCACGTTAAACATGG 577
.||.|.||.||| |||| ||||||.||.||.||.||.||..|.||.||||
BPUM_2832___m 529 ATCGTCGGTGTC-GCTTGTTTATATGCAGTCACTGGTACACTGAATATGG 577
BSNT_04655___ 578 CGGATCTTAGCGTGAAAATCAGC-GAAACAGGACAAACCGGGCTGATCAC 626
|.|||.|.||.||.||.|| .|| |||.||||.|||||.||..|.|||||
BPUM_2832___m 578 CTGATTTAAGTGTAAAGAT-TGCTGAATCAGGGCAAACAGGATTAATCAC 626
BSNT_04655___ 627 TGTGATTGGTGTCC-------TGATGCTTTTGGTATTTGGCATGAAGGGC 669
|||.||| ||| |.|||.|| ||.||||||.|.||.|..
BPUM_2832___m 627 TGTTATT----TCCATTCTGTTCATGATT---GTGTTTGGCTTAAAAGCT 669
BSNT_04655___ 670 GGAATCTTCCCCCTCTACTTTTGGCTTCCAGGCTCTTATTACGCGCCACC 719
|||||||||||.||.||.||.|||||.|||||.||.|||.|.||.||.||
BPUM_2832___m 670 GGAATCTTCCCGCTTTATTTCTGGCTGCCAGGATCATATCATGCACCGCC 719
BSNT_04655___ 720 GGCGGCAATCTCCGCGTTGTTCGGCGCTTTGCTGACAAAAGTCGGGTTAT 769
.|||||.||.|||||..|.||.||.||||||||.|||||.||.||.||||
BPUM_2832___m 720 AGCGGCGATTTCCGCTCTATTTGGTGCTTTGCTCACAAAGGTTGGCTTAT 769
BSNT_04655___ 770 ATTCGATTGCGAGGGTTTTCACATTGATTTTTATTCACGATACAGCCTTT 819
||.|||||||.||.||.||.|||||.||||||||.||||||||||..||.
BPUM_2832___m 770 ATGCGATTGCCAGAGTCTTTACATTAATTTTTATACACGATACAGGGTTC 819
BSNT_04655___ 820 ACCCAT-CAGCTGATGATTTGGCTGGCGGCGCTGACTGTGATTTTCGGTG 868
|||||| || ||.|||...|||||.||.||.|||||.|||||.||.||||
BPUM_2832___m 820 ACCCATACA-CTTATGGCGTGGCTAGCCGCACTGACGGTGATATTTGGTG 868
BSNT_04655___ 869 TGATCGGTTCACTCGCTTATTCGAATGT-CATGAAA-ATTGTGATCTATA 916
||||.||.||||||||.|||||..|||| || ||| ||.||||||||||
BPUM_2832___m 869 TGATAGGCTCACTCGCCTATTCCGATGTGCA--AAAGATAGTGATCTATA 916
BSNT_04655___ 917 ACATTATTACCGCTGTCGGCGTGATTTTGTTCGGTGTAGCAG----TACA 962
|||||.|.||.||.||.||.||.||||||||.||..|.|||| ||||
BPUM_2832___m 917 ACATTGTCACAGCCGTTGGGGTCATTTTGTTTGGCATTGCAGCCAATACA 966
BSNT_04655___ 963 CACCCCCGCATCCATTCAGGGCGCGATCTACTATCTGATTCACGATATGC 1012
|||||.||..|.||.||.||.||.||||||||.|||||.||.|||.
BPUM_2832___m 967 ----CCCGCCTCACTCCAAGGTGCCATTTACTATCTCATTCATGACATGG 1012
BSNT_04655___ 1013 TGATTAAGGGCGCTTTGTTTATGCTGGCGGGTACGCTGATCGCATTG--- 1059
||||.||.||||||||.|||||||||||.|||.|.|| || |||
BPUM_2832___m 1013 TGATCAAAGGCGCTTTATTTATGCTGGCAGGTGCACT-AT----TTGTGT 1057
BSNT_04655___ 1060 --ACTGGAACTGCGA----ACCTGCATAAAATGGGCGGGCTGA-TCAA-- 1100
.||||.|| | ||.||.|.||.||||||||.|||| ||||
BPUM_2832___m 1058 ATGCTGGCAC----AAATCACTTGAAAAAGATGGGCGGACTGATTCAATC 1103
BSNT_04655___ 1101 -ACGCTATCCTGTTCTTGGATGGATGTTTTTCATTTCTGCTATTTCTCTT 1149
|.|| ||| |.||.||.||||||||||||||.||.|||.|.|||||.
BPUM_2832___m 1104 TAAGC---CCT-TACTAGGGTGGATGTTTTTCATATCGGCTTTATCTCTA 1149
BSNT_04655___ 1150 GCAGGCATTCCGCCACTGAGCGGATTTGTCGGCAAATTTAAA-ATTGCGG 1198
|||||.||.||.||.|||||.||.|||||.|| |||.||||| ||||..|
BPUM_2832___m 1150 GCAGGTATCCCACCTCTGAGTGGGTTTGTTGG-AAAGTTAAAGATTGTAG 1198
BSNT_04655___ 1199 AGGGCGGCTTCGCAGAAGGTGA------ATTTACGATATCCATGCTGATT 1242
|.||||||||..|.|..|||.| .|||.| |||||.|| |
BPUM_2832___m 1199 AAGGCGGCTTTTCTGCTGGTTACATGACCTTTTC--TATCCTTG-----T 1241
BSNT_04655___ 1243 C-TGCTTTCAAGTCTGCTCGTACTGTACTCTGTGCTGAGGATCTTTATAC 1291
| |.||.||.||.||.||.||.||.||.||..|..|||||||.||.|..|
BPUM_2832___m 1242 CTTACTGTCCAGCCTTCTTGTCCTTTATTCCATTATGAGGATTTTCACGC 1291
BSNT_04655___ 1292 ATGCGTTTTGGGGCGAAGAAAAAGAAACGCCAA-AACCAAATCATCGAAC 1340
..||.|||||||||||.|||.||||.|||..|| ||..|||.|.||||
BPUM_2832___m 1292 TCGCATTTTGGGGCGAGGAACAAGATACGAGAAGAAGGAAACCGTCGA-- 1339
BSNT_04655___ 1341 AGCTAAAGGACTTCTTTATCC-GGC----AGCTATTTTTCTCTTGCTGTC 1385
.|||||||.|..|.||.|| ||| .|||..|..||| ||||
BPUM_2832___m 1340 --TTAAAGGAATGGTGTACCCTGGCGTAATGCTTGTGATCT-----TGTC 1382
BSNT_04655___ 1386 TCTTCTCTTCGGATTGGGTACAGAATGGGTGTCGCCTTACGTTGATCAAG 1435
.|||..|.|.||.||.||.|||||||...|.||.|||||..||.||||||
BPUM_2832___m 1383 ACTTGCCATTGGGTTAGGGACAGAATTCATTTCCCCTTATATTAATCAAG 1432
BSNT_04655___ 1436 CGGCCGAGACGCTGCTGAA-TCCGGAAAAATATATCGAAGCTGTTCTGAA 1484
|.||.||.|.||| ||.|| .||.|||||||||||..|||||||.|||||
BPUM_2832___m 1433 CTGCGGAAATGCT-CTCAACACCAGAAAAATATATTCAAGCTGTGCTGAA 1481
BSNT_04655___ 1485 GGAGTAG 1491
|||||||
BPUM_2832___m 1482 GGAGTAG 1488
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