Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04642 and BPUM_2820

See Amino acid alignment / Visit BSNT_04642 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_04642___dcuS.1.24716.seq
#    -bsequence dna-align/BPUM_2820.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04642___dcuS-BPUM_2820.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04642___dcuS-BPUM_2820.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04642___dcuS
# 2: BPUM_2820
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1688
# Identity:    1116/1688 (66.1%)
# Similarity:  1116/1688 (66.1%)
# Gaps:         172/1688 (10.2%)
# Score: 3381.0
# 
#
#=======================================

BSNT_04642___      1 ATGAAAAAAACATTAAAACTGCAAACCAGACTCACCATATTTGTTTGTAT     50
                     .||||||||||.||||.|.|||||||..|.||.||.||.|||||||||||
BPUM_2820          1 GTGAAAAAAACTTTAAGATTGCAAACACGGCTGACGATTTTTGTTTGTAT     50

BSNT_04642___     51 CGTTGTATTAA--TCGCATTGCTCATTACGTTTTTTACAGTC-GGTGCCC     97
                     .|||||..|.|  ||.|.|||  .||.||.||.|||||..|| |||   |
BPUM_2820         51 TGTTGTCCTGATCTCTCTTTG--TATCACTTTCTTTACGATCTGGT---C     95

BSNT_04642___     98 A-AACCACCAAACGA------ATTAGAGATCAGGAAAAGGCCACTGCGCT    140
                     | ||.||.|.|| ||      ||.||    ||||||...|.||..||.||
BPUM_2820         96 AGAAACAGCGAA-GAACATTCATCAG----CAGGAACGTGACATCGCCCT    140

BSNT_04642___    141 GCAGACTGCTGAAATGGTAGCTGAGGCGCCGATGACAGCCGCTGCTTTAG    190
                     ....|||||..|.|||||.||.|||||.|||||.|||||.....|.||| 
BPUM_2820        141 CTCCACTGCCAAGATGGTCGCAGAGGCTCCGATCACAGCTAAATCATTA-    189

BSNT_04642___    191 AAAGCGGAAAAAAACAAAAG------GAACTGC----AGAGCTAC-ACAA    229
                     ||||     ||||.|||..|      |.|||||    |.|  ||| ||||
BPUM_2820        190 AAAG-----AAAACCAATCGTATTCAGCACTGCGTCAATA--TACAACAA    232

BSNT_04642___    230 AGCGGGTTCAGAAAATTACCGGCACGGAATTTGTTGTCGTCATGGATATG    279
                        |.||||||..|||.|||...||.|||||.||.|||||.|||||||||
BPUM_2820        233 ---GTGTTCAGCGAATCACCAAAACCGAATTCGTAGTCGTAATGGATATG    279

BSNT_04642___    280 AACGGTATCCGCAAAACTCATCCTGACCCG-AGCAAAATCGGAAAAAAAT    328
                     ||.||.||.||||||||.|||||..|.||| || ||.|||||.||....|
BPUM_2820        280 AATGGAATTCGCAAAACCCATCCAAATCCGCAG-AAGATCGGGAAGCGGT    328

BSNT_04642___    329 TCAGAGGCGGTGATGAGTCCGAG---GTATTAAAAGGGCATGTCCATATC    375
                     |....|||||||||||   .|||   |.||||.|.||..|.|..|||||.
BPUM_2820        329 TTGCTGGCGGTGATGA---AGAGCCAGCATTACAGGGTAAAGAACATATT    375

BSNT_04642___    376 AGCACAGCCTCTGGCACGCTCGGGAAATCGCAGAGAGCGTTCGTCCCTGT    425
                     ||.||.||.|||||.||.||.||.|.|||...|.|.||.||.|||||.||
BPUM_2820        376 AGTACGGCTTCTGGAACACTTGGCAGATCTATGCGTGCTTTTGTCCCGGT    425

BSNT_04642___    426 CTACGCGGAGAATGGAAAACAGGTCGGTGCAGTCGCGGTCGGCATCACCG    475
                     .||.|...|..|||||||.|||.||||.||.||.||.||.||.||.||..
BPUM_2820        426 TTATGATCAAGATGGAAAGCAGCTCGGGGCTGTGGCAGTAGGGATTACGT    475

BSNT_04642___    476 TAAATGAAATTGA-TGAAGTGATCAGCCAT---AGCTTACGGCCGCTTTA    521
                     ||||.|||||||| |    ||||||..|||   |||||||..||.||.||
BPUM_2820        476 TAAAGGAAATTGACT----TGATCATTCATCAAAGCTTACTTCCACTCTA    521

BSNT_04642___    522 CTTTATTATTTGCGTCAGCA--------TCTTCGT--CGGTGTGATCGGA    561
                     |||         ||||| ||        |||||.|  .||..|.||||||
BPUM_2820        522 CTT---------CGTCA-CATCGCTCAGTCTTCTTTCTGGAATCATCGGA    561

BSNT_04642___    562 GCCGTTATCGTCGCCCGTACAGTGAAAAATATCATGTACGGACTTGAACC    611
                     ||..|.||.||.||..|.|.||||||.||.|||||||..|||||.||.||
BPUM_2820        562 GCACTCATTGTGGCAAGAAAAGTGAAGAAAATCATGTTTGGACTAGAGCC    611

BSNT_04642___    612 TTATGAAATTGCGACTCTGCTTGAAGAACGGAGCGCGATGCTGGAATCGA    661
                     ..||||.|||||.||..|..|..|||||||.|||||.|||||.|||||.|
BPUM_2820        612 AGATGAGATTGCTACATTATTAAAAGAACGAAGCGCCATGCTAGAATCAA    661

BSNT_04642___    662 CGAAGGAAGGAATACTCGCTGTCGATGAACATGGCAAAATTAAACTTGCC    711
                     |.||.|||||.||.||.||.||||||.|.||.||.|||||.||.||.|||
BPUM_2820        662 CAAAAGAAGGGATTCTTGCCGTCGATCAGCACGGTAAAATCAAGCTCGCC    711

BSNT_04642___    712 AACGCGGAAGCAAAACACCTATTCGTC--AAAATGGGCATCAACACAAAT    759
                     ||.||.|||||.||||..||.||  ||  ||.||||||||.|......||
BPUM_2820        712 AATGCTGAAGCGAAACGACTCTT--TCATAATATGGGCATTATGGTTGAT    759

BSNT_04642___    760 CCCATTGATCAGGATGTAGATGACATCTTGCCGAAAAGCCGCTTGAAAAA    809
                     ||.|..||.||.|||||..|.|...||.|.||...||||.||||.||..|
BPUM_2820        760 CCTAGAGAACAAGATGTTCAGGCTCTCCTCCCTTCAAGCGGCTTAAAGCA    809

BSNT_04642___    810 GGTCATTGAGACAAAAAAACCTCTTCAAGACAGAGACGTCCGCATTAACG    859
                     .||||||||.|||...||.||.||.|..|||.|.|||||..|.||.||||
BPUM_2820        810 AGTCATTGATACACGCAAGCCGCTGCTTGACCGCGACGTGAGAATGAACG    859

BSNT_04642___    860 GACTGGAGCTTGTGTTTAATGAAGTTCCTATCCAGCTGAAAGGACAAACT    909
                     ||||||||||.||.|||||.||||||||.||...|.|.|||||..|||.|
BPUM_2820        860 GACTGGAGCTCGTCTTTAACGAAGTTCCGATTACGGTAAAAGGTGAAATT    909

BSNT_04642___    910 GTCGGAGCGATTGCAACATTCCGCGACAAGACCGAGGTAAAACATTTAGC    959
                     |||||.||.||.||.||.|||||.|||||.||.||.||.|||||.||.||
BPUM_2820        910 GTCGGGGCAATCGCCACCTTCCGTGACAAAACAGAAGTCAAACACTTGGC    959

BSNT_04642___    960 TGAACAGCTTTCCGGTGTTAAAATGTATGCAAACGCACTGAGAGCGCAGT   1009
                     |||.|||||...|||.||.|||||||||||||||||.||..|.||.||||
BPUM_2820        960 TGAGCAGCTAAGCGGAGTCAAAATGTATGCAAACGCCCTCCGTGCCCAGT   1009

BSNT_04642___   1010 CTCATGAATTTATGAACAAACTGCATGTGATATTAGGTCTCGTCCAGCTG   1059
                     |.|||||||||||||||||.||.|||||.||.|||||..|.||.||.||.
BPUM_2820       1010 CGCATGAATTTATGAACAAGCTTCATGTCATTTTAGGATTGGTACAACTC   1059

BSNT_04642___   1060 AAAGAGTATGATGATCTTGGAGATTATATTAAAGATATAGCCAT---ACA   1106
                     |||.|.||.|||||.|||||...||||||.||||||||.||.||   .||
BPUM_2820       1060 AAAAACTACGATGACCTTGGCACTTATATCAAAGATATTGCAATCTATCA   1109

BSNT_04642___   1107 GCAAAAATCAGAAACAAGTGAAATTATAAATGATGTCAAAAGCTCCGTAC   1156
                     |||.|   |.|||||||.|||.||.||.||..||||.||||.|||.||..
BPUM_2820       1110 GCAGA---CGGAAACAAATGAGATCATCAACCATGTGAAAAACTCTGTTT   1156

BSNT_04642___   1157 TGGCCGGTTTTCTGCTCGGAAAGCAAAGCTTTATACGTGAGCAGGGCGC-   1205
                     |.||.||.|||.|.||.|||||.|||||.|.|||..|.||.||.||||| 
BPUM_2820       1157 TAGCAGGATTTTTACTAGGAAAACAAAGTTATATCAGGGAACAAGGCGCG   1206

BSNT_04642___   1206 -------AAATCTTGATATTGAATGCAACGGTGTCA----TCCCGAACGC   1244
                            ||.||.|        |||||.|    .||    ||||.||..|
BPUM_2820       1207 ACCTTAGAAGTCAT--------ATGCAGC----ACACAAGTCCCAAATTC   1244

BSNT_04642___   1245 GGCAGACCCTTCTGTCATCCATGAACTTATTACAATCATCGGAAATCTCA   1294
                     .|..|||||..|.||.|..|||||.||.|||||..||||.||.||.||..
BPUM_2820       1245 AGAGGACCCAGCAGTGACGCATGATCTCATTACCGTCATTGGCAACCTGT   1294

BSNT_04642___   1295 TCAACAATGGCTTAGACGC---CGTTGCGGAT----ATGCCG----AAAA   1333
                     |.||.|         ||||   ||.|||||.|    |..|.|    ||||
BPUM_2820       1295 TAAATA---------ACGCACTCGATGCGGTTTCTCAAACTGAGACAAAA   1335

BSNT_04642___   1334 AACAAATCAC-----CATGTCC-ATGCGCTTCCATAACAGCATACTTGAT   1377
                     |||  |||.|     ||| ||| ||.|| |||...|.|||    |||.||
BPUM_2820       1336 AAC--ATCTCGATCTCAT-TCCGATACG-TTCAGGAGCAG----CTTCAT   1377

BSNT_04642___   1378 ATTGAAATTACCGATACTGGAGCAGGCATGTCT----GAAGAAGACCAAG   1423
                     |||||.|||||.||.||.||.|..|    ||||    .|||||||.||||
BPUM_2820       1378 ATTGAGATTACAGACACGGGTGTTG----GTCTCACAAAAGAAGAACAAG   1423

BSNT_04642___   1424 CCAAA--GTATTTGAACAAGGCTATTCAAC-AAAGGGCAAAAACCGGGGA   1470
                       |||  .|.||.||.|||||||.|||||| |||||.| ||.||.|.|||
BPUM_2820       1424 --AAATCATGTTCGATCAAGGCTTTTCAACGAAAGGAC-AAGACAGAGGA   1470

BSNT_04642___   1471 TTCGGCCTTTATTTC----ACACAGCAAAGCATCGAAAATTTAAAAGGCC   1516
                     |||||.||.||.|||    ||    |||||||||.||||.||.||.||.|
BPUM_2820       1471 TTCGGTCTCTACTTCGTTGAC----CAAAGCATCAAAAAATTGAATGGAC   1516

BSNT_04642___   1517 AAATGATCCTCACAAGCGAAAA--GAATGAAGGAACGACATTCAGTATTC   1564
                     |..|.||..||||.||.|||||  ||  |||||||||||.||.|||.|.|
BPUM_2820       1517 ATCTAATTGTCACGAGTGAAAAAGGA--GAAGGAACGACCTTTAGTCTCC   1564

BSNT_04642___   1565 GCATCCCGTACGAACCGAAGGAGGAAAATCATGATTAA   1602
                     ||||.|||||..|||..||||||||....|||||||||
BPUM_2820       1565 GCATTCCGTATAAACAAAAGGAGGATTCACATGATTAA   1602


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