Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04642 and BPUM_2820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04642___dcuS.1.24716.seq
# -bsequence dna-align/BPUM_2820.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04642___dcuS-BPUM_2820.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04642___dcuS-BPUM_2820.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04642___dcuS
# 2: BPUM_2820
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1688
# Identity: 1116/1688 (66.1%)
# Similarity: 1116/1688 (66.1%)
# Gaps: 172/1688 (10.2%)
# Score: 3381.0
#
#
#=======================================
BSNT_04642___ 1 ATGAAAAAAACATTAAAACTGCAAACCAGACTCACCATATTTGTTTGTAT 50
.||||||||||.||||.|.|||||||..|.||.||.||.|||||||||||
BPUM_2820 1 GTGAAAAAAACTTTAAGATTGCAAACACGGCTGACGATTTTTGTTTGTAT 50
BSNT_04642___ 51 CGTTGTATTAA--TCGCATTGCTCATTACGTTTTTTACAGTC-GGTGCCC 97
.|||||..|.| ||.|.||| .||.||.||.|||||..|| ||| |
BPUM_2820 51 TGTTGTCCTGATCTCTCTTTG--TATCACTTTCTTTACGATCTGGT---C 95
BSNT_04642___ 98 A-AACCACCAAACGA------ATTAGAGATCAGGAAAAGGCCACTGCGCT 140
| ||.||.|.|| || ||.|| ||||||...|.||..||.||
BPUM_2820 96 AGAAACAGCGAA-GAACATTCATCAG----CAGGAACGTGACATCGCCCT 140
BSNT_04642___ 141 GCAGACTGCTGAAATGGTAGCTGAGGCGCCGATGACAGCCGCTGCTTTAG 190
....|||||..|.|||||.||.|||||.|||||.|||||.....|.|||
BPUM_2820 141 CTCCACTGCCAAGATGGTCGCAGAGGCTCCGATCACAGCTAAATCATTA- 189
BSNT_04642___ 191 AAAGCGGAAAAAAACAAAAG------GAACTGC----AGAGCTAC-ACAA 229
|||| ||||.|||..| |.||||| |.| ||| ||||
BPUM_2820 190 AAAG-----AAAACCAATCGTATTCAGCACTGCGTCAATA--TACAACAA 232
BSNT_04642___ 230 AGCGGGTTCAGAAAATTACCGGCACGGAATTTGTTGTCGTCATGGATATG 279
|.||||||..|||.|||...||.|||||.||.|||||.|||||||||
BPUM_2820 233 ---GTGTTCAGCGAATCACCAAAACCGAATTCGTAGTCGTAATGGATATG 279
BSNT_04642___ 280 AACGGTATCCGCAAAACTCATCCTGACCCG-AGCAAAATCGGAAAAAAAT 328
||.||.||.||||||||.|||||..|.||| || ||.|||||.||....|
BPUM_2820 280 AATGGAATTCGCAAAACCCATCCAAATCCGCAG-AAGATCGGGAAGCGGT 328
BSNT_04642___ 329 TCAGAGGCGGTGATGAGTCCGAG---GTATTAAAAGGGCATGTCCATATC 375
|....||||||||||| .||| |.||||.|.||..|.|..|||||.
BPUM_2820 329 TTGCTGGCGGTGATGA---AGAGCCAGCATTACAGGGTAAAGAACATATT 375
BSNT_04642___ 376 AGCACAGCCTCTGGCACGCTCGGGAAATCGCAGAGAGCGTTCGTCCCTGT 425
||.||.||.|||||.||.||.||.|.|||...|.|.||.||.|||||.||
BPUM_2820 376 AGTACGGCTTCTGGAACACTTGGCAGATCTATGCGTGCTTTTGTCCCGGT 425
BSNT_04642___ 426 CTACGCGGAGAATGGAAAACAGGTCGGTGCAGTCGCGGTCGGCATCACCG 475
.||.|...|..|||||||.|||.||||.||.||.||.||.||.||.||..
BPUM_2820 426 TTATGATCAAGATGGAAAGCAGCTCGGGGCTGTGGCAGTAGGGATTACGT 475
BSNT_04642___ 476 TAAATGAAATTGA-TGAAGTGATCAGCCAT---AGCTTACGGCCGCTTTA 521
||||.|||||||| | ||||||..||| |||||||..||.||.||
BPUM_2820 476 TAAAGGAAATTGACT----TGATCATTCATCAAAGCTTACTTCCACTCTA 521
BSNT_04642___ 522 CTTTATTATTTGCGTCAGCA--------TCTTCGT--CGGTGTGATCGGA 561
||| ||||| || |||||.| .||..|.||||||
BPUM_2820 522 CTT---------CGTCA-CATCGCTCAGTCTTCTTTCTGGAATCATCGGA 561
BSNT_04642___ 562 GCCGTTATCGTCGCCCGTACAGTGAAAAATATCATGTACGGACTTGAACC 611
||..|.||.||.||..|.|.||||||.||.|||||||..|||||.||.||
BPUM_2820 562 GCACTCATTGTGGCAAGAAAAGTGAAGAAAATCATGTTTGGACTAGAGCC 611
BSNT_04642___ 612 TTATGAAATTGCGACTCTGCTTGAAGAACGGAGCGCGATGCTGGAATCGA 661
..||||.|||||.||..|..|..|||||||.|||||.|||||.|||||.|
BPUM_2820 612 AGATGAGATTGCTACATTATTAAAAGAACGAAGCGCCATGCTAGAATCAA 661
BSNT_04642___ 662 CGAAGGAAGGAATACTCGCTGTCGATGAACATGGCAAAATTAAACTTGCC 711
|.||.|||||.||.||.||.||||||.|.||.||.|||||.||.||.|||
BPUM_2820 662 CAAAAGAAGGGATTCTTGCCGTCGATCAGCACGGTAAAATCAAGCTCGCC 711
BSNT_04642___ 712 AACGCGGAAGCAAAACACCTATTCGTC--AAAATGGGCATCAACACAAAT 759
||.||.|||||.||||..||.|| || ||.||||||||.|......||
BPUM_2820 712 AATGCTGAAGCGAAACGACTCTT--TCATAATATGGGCATTATGGTTGAT 759
BSNT_04642___ 760 CCCATTGATCAGGATGTAGATGACATCTTGCCGAAAAGCCGCTTGAAAAA 809
||.|..||.||.|||||..|.|...||.|.||...||||.||||.||..|
BPUM_2820 760 CCTAGAGAACAAGATGTTCAGGCTCTCCTCCCTTCAAGCGGCTTAAAGCA 809
BSNT_04642___ 810 GGTCATTGAGACAAAAAAACCTCTTCAAGACAGAGACGTCCGCATTAACG 859
.||||||||.|||...||.||.||.|..|||.|.|||||..|.||.||||
BPUM_2820 810 AGTCATTGATACACGCAAGCCGCTGCTTGACCGCGACGTGAGAATGAACG 859
BSNT_04642___ 860 GACTGGAGCTTGTGTTTAATGAAGTTCCTATCCAGCTGAAAGGACAAACT 909
||||||||||.||.|||||.||||||||.||...|.|.|||||..|||.|
BPUM_2820 860 GACTGGAGCTCGTCTTTAACGAAGTTCCGATTACGGTAAAAGGTGAAATT 909
BSNT_04642___ 910 GTCGGAGCGATTGCAACATTCCGCGACAAGACCGAGGTAAAACATTTAGC 959
|||||.||.||.||.||.|||||.|||||.||.||.||.|||||.||.||
BPUM_2820 910 GTCGGGGCAATCGCCACCTTCCGTGACAAAACAGAAGTCAAACACTTGGC 959
BSNT_04642___ 960 TGAACAGCTTTCCGGTGTTAAAATGTATGCAAACGCACTGAGAGCGCAGT 1009
|||.|||||...|||.||.|||||||||||||||||.||..|.||.||||
BPUM_2820 960 TGAGCAGCTAAGCGGAGTCAAAATGTATGCAAACGCCCTCCGTGCCCAGT 1009
BSNT_04642___ 1010 CTCATGAATTTATGAACAAACTGCATGTGATATTAGGTCTCGTCCAGCTG 1059
|.|||||||||||||||||.||.|||||.||.|||||..|.||.||.||.
BPUM_2820 1010 CGCATGAATTTATGAACAAGCTTCATGTCATTTTAGGATTGGTACAACTC 1059
BSNT_04642___ 1060 AAAGAGTATGATGATCTTGGAGATTATATTAAAGATATAGCCAT---ACA 1106
|||.|.||.|||||.|||||...||||||.||||||||.||.|| .||
BPUM_2820 1060 AAAAACTACGATGACCTTGGCACTTATATCAAAGATATTGCAATCTATCA 1109
BSNT_04642___ 1107 GCAAAAATCAGAAACAAGTGAAATTATAAATGATGTCAAAAGCTCCGTAC 1156
|||.| |.|||||||.|||.||.||.||..||||.||||.|||.||..
BPUM_2820 1110 GCAGA---CGGAAACAAATGAGATCATCAACCATGTGAAAAACTCTGTTT 1156
BSNT_04642___ 1157 TGGCCGGTTTTCTGCTCGGAAAGCAAAGCTTTATACGTGAGCAGGGCGC- 1205
|.||.||.|||.|.||.|||||.|||||.|.|||..|.||.||.|||||
BPUM_2820 1157 TAGCAGGATTTTTACTAGGAAAACAAAGTTATATCAGGGAACAAGGCGCG 1206
BSNT_04642___ 1206 -------AAATCTTGATATTGAATGCAACGGTGTCA----TCCCGAACGC 1244
||.||.| |||||.| .|| ||||.||..|
BPUM_2820 1207 ACCTTAGAAGTCAT--------ATGCAGC----ACACAAGTCCCAAATTC 1244
BSNT_04642___ 1245 GGCAGACCCTTCTGTCATCCATGAACTTATTACAATCATCGGAAATCTCA 1294
.|..|||||..|.||.|..|||||.||.|||||..||||.||.||.||..
BPUM_2820 1245 AGAGGACCCAGCAGTGACGCATGATCTCATTACCGTCATTGGCAACCTGT 1294
BSNT_04642___ 1295 TCAACAATGGCTTAGACGC---CGTTGCGGAT----ATGCCG----AAAA 1333
|.||.| |||| ||.|||||.| |..|.| ||||
BPUM_2820 1295 TAAATA---------ACGCACTCGATGCGGTTTCTCAAACTGAGACAAAA 1335
BSNT_04642___ 1334 AACAAATCAC-----CATGTCC-ATGCGCTTCCATAACAGCATACTTGAT 1377
||| |||.| ||| ||| ||.|| |||...|.||| |||.||
BPUM_2820 1336 AAC--ATCTCGATCTCAT-TCCGATACG-TTCAGGAGCAG----CTTCAT 1377
BSNT_04642___ 1378 ATTGAAATTACCGATACTGGAGCAGGCATGTCT----GAAGAAGACCAAG 1423
|||||.|||||.||.||.||.|..| |||| .|||||||.||||
BPUM_2820 1378 ATTGAGATTACAGACACGGGTGTTG----GTCTCACAAAAGAAGAACAAG 1423
BSNT_04642___ 1424 CCAAA--GTATTTGAACAAGGCTATTCAAC-AAAGGGCAAAAACCGGGGA 1470
||| .|.||.||.|||||||.|||||| |||||.| ||.||.|.|||
BPUM_2820 1424 --AAATCATGTTCGATCAAGGCTTTTCAACGAAAGGAC-AAGACAGAGGA 1470
BSNT_04642___ 1471 TTCGGCCTTTATTTC----ACACAGCAAAGCATCGAAAATTTAAAAGGCC 1516
|||||.||.||.||| || |||||||||.||||.||.||.||.|
BPUM_2820 1471 TTCGGTCTCTACTTCGTTGAC----CAAAGCATCAAAAAATTGAATGGAC 1516
BSNT_04642___ 1517 AAATGATCCTCACAAGCGAAAA--GAATGAAGGAACGACATTCAGTATTC 1564
|..|.||..||||.||.||||| || |||||||||||.||.|||.|.|
BPUM_2820 1517 ATCTAATTGTCACGAGTGAAAAAGGA--GAAGGAACGACCTTTAGTCTCC 1564
BSNT_04642___ 1565 GCATCCCGTACGAACCGAAGGAGGAAAATCATGATTAA 1602
||||.|||||..|||..||||||||....|||||||||
BPUM_2820 1565 GCATTCCGTATAAACAAAAGGAGGATTCACATGATTAA 1602
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