Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04638 and BPUM_2816
See
Amino acid alignment /
Visit
BSNT_04638 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_04638.1.24716.seq
# -bsequence dna-align/BPUM_2816.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04638-BPUM_2816.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04638-BPUM_2816.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04638
# 2: BPUM_2816
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity: 692/1267 (54.6%)
# Similarity: 692/1267 (54.6%)
# Gaps: 287/1267 (22.7%)
# Score: 1812.5
#
#
#=======================================
BSNT_04638 0 -------------------------------------------------- 0
BPUM_2816 1 TTGTACATCATGTGGTTTGTGAACTTTTTTGTATCTGCCAGCATTACAAT 50
BSNT_04638 0 -------------------------------------------------- 0
BPUM_2816 51 GATCGTCCCTTTTTTATCACTTTACATAGAATCTCTTGATAGCAGTTATT 100
BSNT_04638 1 --------------------------------GTGTTCGGCATTACATTT 18
||.||.|||.|.||.|||
BPUM_2816 101 CAAATGAATTTGTCCAGAGATGGAGCGGTTATGTCTTTGGCGTCACGTTT 150
BSNT_04638 19 CTCATGGCGTTTTTGGTATCCCCGTTTTGGGGACGGTTCGGAGACAAACG 68
.|.|.|||.|||.|..|.||.|||.||||||||||..|.||||||...|.
BPUM_2816 151 TTAACGGCCTTTCTAATTTCTCCGATTTGGGGACGAATTGGAGACCGGCA 200
BSNT_04638 69 CGGATACAAGAAAA---TCCTTATGGCAACCGGAACGGGCATTGCCCTCA 115
.||.||.||.||.| |.||||| .|||||| ||||...| |
BPUM_2816 201 TGGCTATAAAAAGATTTTGCTTAT--------TAACGGG-ATTGGAAT-A 240
BSNT_04638 116 GC-------ATTTTCTTCATGGGCTTTGTTACATCGGTGTACCAATTGTT 158
|| |||.|.||.|||||..||||...|.|.||.||.||| .
BPUM_2816 241 GCGACAAGTATTCTATTAATGGGGCTTGTGCAAACTGTTTATCAA----C 286
BSNT_04638 159 TTTTCTGCGTATGGC----AATGGGTCTTGTAACCGGATTCATCCCGACA 204
|.|||..|.|..||| .|||||.|||||.||.||.||.|||.||||.
BPUM_2816 287 TATTCGCCCTGAGGCTCTTTATGGGGCTTGTCACAGGCTTTATCTCGACT 336
BSNT_04638 205 TCTCTTGCGATGATTTCGGCACAGACTCCGAAGAGCTCA---GCCGGCAA 251
||..|.||..|.||.||.||||||| ||||.|...|| ||.||.||
BPUM_2816 337 TCAATGGCACTCATCTCTGCACAGA---CGAAAAAGGCAACTGCGGGTAA 383
BSNT_04638 252 AACGCTTGGCACGCTGCAAATGGGGCAAGTGTCCGGAAGCTTGTTCGGCC 301
|||.|||||.|||.||||.|||.|..|.||..|||||.|.|||||.||||
BPUM_2816 384 AACCCTTGGTACGATGCAGATGAGTAATGTTGCCGGAGGATTGTTTGGCC 433
BSNT_04638 302 CGCTTTTGGGAGG---CATGCTTGCTGATCGTTTCGGCTTTACGTATACC 348
|..|..||||.|| |||| ||.||..|..||||.||||..|||||.
BPUM_2816 434 CATTAATGGGCGGATTCATG---GCAGACAGCGTCGGATTTATTTATACG 480
BSNT_04638 349 TTTTTTATCACATCCTTTGTAATTTTCTCGTCTGTTCTTCTCGTG-TTAT 397
|||||..|||||.|...|||.||||...||||.|...|| ||| ||||
BPUM_2816 481 TTTTTCCTCACAGCGGCTGTCATTTATGCGTCAGCCATT---GTGATTAT 527
BSNT_04638 398 TT--GGTGTCAAAGAAAAGCC--TC--TTGCAGAGAAAACAGCCAAACGT 441
|| ||.||.||||||.|||| || ||..|.||| |||.||.||
BPUM_2816 528 TTTCGGAGTGAAAGAACAGCCCATCCGTTCAAAAGA----AGCGAAGCG- 572
BSNT_04638 442 ACG--TCATACTCGAGAAAAGAAGTGCTC--TCCTATATTTTTCACCATC 487
|| ||.||.||..|.||.|||||.||| || |||||||..|.||.|
BPUM_2816 573 -CGTTTCTTATTCACGGAAGGAAGTACTCGTTC--ATATTTTCAAACAGC 619
BSNT_04638 488 CGGCGCT-GTGGGTCATGATGCTGTTAACCATGCTGATT---CAAACAGG 533
|...||| || .||.|.||||||.||||| |.|.||| |||..|||
BPUM_2816 620 CTTTGCTAGT-CGTTACGATGCTCTTAAC---GTTTATTACACAAGTAGG 665
BSNT_04638 534 CAATTTCAGTATCCAGCCCCTGCTCGCTTTATATGTAAATGAGCTGCACG 583
.||.||.||.||.|||||.||..|.||||||||..|..||||..|.||||
BPUM_2816 666 GAACTTTAGCATTCAGCCTCTTTTGGCTTTATACATTCATGATTTACACG 715
BSNT_04638 584 GACCTGTCAATCTTGCCTTTTTCTCCGGCATGGCATTTTCAGCAACGGGG 633
|.|||||.|||||.||.||||...|.||..|.||.||.||.|||||.||.
BPUM_2816 716 GCCCTGTTAATCTCGCATTTTATGCGGGTCTTGCGTTCTCTGCAACTGGA 765
BSNT_04638 634 CTCGGAAGTTTGCTGCTGGCTAGAAAATGGGGTGATCTGGGCGACCGCTA 683
||.||.|.||||||..|..|..||||.|||||.|||||.||.||.||
BPUM_2816 766 CTTGGCAATTTGCTCTTTACACGAAAGTGGGGAGATCTCGGAGATCG--- 812
BSNT_04638 684 CGGCCACCGCCGCATTTTAATCGGAC---------TTTTGCTCGCC---- 720
|||.||.| |..||||||||
BPUM_2816 813 ------------------AATTGGTCATGACAAGGTGCTGCTCGCCCTTC 844
BSNT_04638 721 ---GCCTCT-TTCTTTTTTATT----CCGCAGGCGCTCGCG---TCCTCA 759
.||||| .|||.||||||| |||||.||..|.||| ||||
BPUM_2816 845 TGATCCTCTCCTCTATTTTATTCATCCCGCAAGCAATGGCGGATTCCT-- 892
BSNT_04638 760 CTCA-GCG-TGCTCCTTGTTTTCAGATTTTTATTCGGAATGGCGATGGGC 807
| ||| ||.|..|..|||||.|.|||.|||.|||.|||||..|.|||
BPUM_2816 893 ---ATGCGATGTTAGTCCTTTTCCGTTTTCTATACGGGATGGCACTCGGC 939
BSNT_04638 808 GGTTTGCTGCCATGCATTACGGCAGCGATCCGCGTTC-AGGCTCCCGGCA 856
||..|..|.|||||.|..|||||....||.|| |.|| |.||.||.|.|.
BPUM_2816 940 GGGATTATCCCATGTACAACGGCGTATATTCG-GATCAAAGCGCCTGCCT 988
BSNT_04638 857 GCATTCAGGGTGAAGTTCTCGGCTACAATGTCAGCTTTCGCTTTTTAGGA 906
..||.||.||.|||||.|||||.||||||||.|||||.||.|||.|.||.
BPUM_2816 989 CTATGCAAGGGGAAGTGCTCGGATACAATGTTAGCTTCCGTTTTCTTGGG 1038
BSNT_04638 907 AACGTGCTCGGGCCTCTGCTCGGGGGAATCATATCGAGCCATTTTAC--C 954
||.||..||||.||..||.|.||.||.||..|..||||.|| |||| .
BPUM_2816 1039 AATGTTGTCGGTCCGGTGATTGGTGGCATTGTCGCGAGTCA--TTACGGA 1086
BSNT_04638 955 ATTTCGGCCACCTTTTACGTCA----CGGCGTTTCTCTTTTTCGCCGGCG 1000
|||.|.||...||||||.|||| |||..|||.|||.|||.|
BPUM_2816 1087 ATTCCAGCTGTCTTTTATGTCACCGCCGGAATTTTTCTGTTTGG------ 1130
BSNT_04638 1001 CCTGCATGCTTTGGATCAT--GCAGAAACTTCGGAAAGATTCTTATGCCA 1048
.||||..||| |.|| ||.| ||||...|.|.||..|.||.|
BPUM_2816 1131 --AGCATTATTT---TTATGGGCGG----TTCGCTCACAGTCGAAGGCAA 1171
BSNT_04638 1049 AAGCAAG------CTGA 1059
|||.||| ||||
BPUM_2816 1172 AAGAAAGGAGTGTCTGA 1188
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.