Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04622 and BPUM_2804

See Amino acid alignment / Visit BSNT_04622 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_04622___yugJ.1.24716.seq
#    -bsequence dna-align/BPUM_2804___yugJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04622___yugJ-BPUM_2804___yugJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04622___yugJ-BPUM_2804___yugJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04622___yugJ
# 2: BPUM_2804___yugJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1180
# Identity:     879/1180 (74.5%)
# Similarity:   879/1180 (74.5%)
# Gaps:          32/1180 ( 2.7%)
# Score: 3151.0
# 
#
#=======================================

BSNT_04622___      1 ATGCAAAACTTTACATACTGGAATCCGACCAAATTAATTTTCGGGCGCGG     50
                     |||.|....|||||.||.|||||.||.||.||||||||.||.||....||
BPUM_2804___y      1 ATGGATCGATTTACTTATTGGAACCCAACGAAATTAATGTTTGGAAAGGG     50

BSNT_04622___     51 CGAAGTGGAAAGACTTCCGGAGGAACTCAAACCTTACGGAAAAAACGTAT    100
                     .|||||...|...|||.|.||.|||||.||||..||||||||||||||||
BPUM_2804___y     51 AGAAGTTTCAGCCCTTTCAGATGAACTTAAACACTACGGAAAAAACGTAT    100

BSNT_04622___    101 TGCTTGTGTACGGAGGCGGCAGCATTAAACGCAGCGGCCTGTATGATCAA    150
                     |.|||||.||.||.||.|||||.||||||||.|.||||||.|||||.|||
BPUM_2804___y    101 TACTTGTATATGGTGGAGGCAGTATTAAACGAAACGGCCTTTATGACCAA    150

BSNT_04622___    151 GTGATTGAACAG----CTGAATAAAGCCGGAGCGACCGTGCA-TGAATTA    195
                     ||..|    |||    ||.||..||.|.|||||.||..| || ||||.|.
BPUM_2804___y    151 GTTGT----CAGCATTCTAAAAGAATCAGGAGCTACAAT-CACTGAACTT    195

BSNT_04622___    196 GCAGGTGTGGAACCGAATCCTCGTGTGTCGACTGTTAATAAAGGTGTTGC    245
                     ||.|||||.||.||.||.||.||..|..|.||.||.|..|||||.||||.
BPUM_2804___y    196 GCTGGTGTTGAGCCAAACCCGCGCTTAACAACGGTAAGAAAAGGGGTTGA    245

BSNT_04622___    246 CATCTGTAA--AGAACAAAACATTGA-TTTCTTGCTGGCTGTTGGAGGCG    292
                     ..|.||.||  |||||  |||.|||| |||.|| .||||.|||||.||||
BPUM_2804___y    246 GCTTTGCAAGGAGAAC--AACGTTGACTTTATT-TTGGCAGTTGGCGGCG    292

BSNT_04622___    293 GAAGCGTAATCGACTG-TACAAAAGCGATTGCCGCAGGAGCGAAGTATGA    341
                     ||||.||.||.|| || |||.|||||.||.||.||.|||||||||||.||
BPUM_2804___y    293 GAAGTGTCATTGA-TGCTACGAAAGCAATCGCAGCCGGAGCGAAGTACGA    341

BSNT_04622___    342 TGGTGATGCATGGGATATCGTTACGAAAAAGCATCAGCCAAAAGATGCTT    391
                     |||.|||||.|||||||||||.|||...||.|||...||||..||.||..
BPUM_2804___y    342 TGGAGATGCTTGGGATATCGTGACGCGTAAACATGTCCCAATGGAAGCCA    391

BSNT_04622___    392 TGCCATTCGGAACGGTATTGACTCTCGCTGCGACTGGTTCAGAAATGAAC    441
                     |.||.|||||.|||||.||.||.||.|||||.||.|||||.|||||||||
BPUM_2804___y    392 TTCCGTTCGGTACGGTGTTAACACTTGCTGCAACAGGTTCTGAAATGAAC    441

BSNT_04622___    442 TCAGGATCTGTTATTACAAACTGGGAAACAAAAGAAAAATACGGCTGGGG    491
                     ||.||.||.||.||.|||||||||||||||||.||.|||||.||||||||
BPUM_2804___y    442 TCTGGGTCAGTGATCACAAACTGGGAAACAAATGAGAAATATGGCTGGGG    491

BSNT_04622___    492 CAG-CCCGCTTGTATTCCCTAAATTCTCGATTCTTGATCCGGTGAATACA    540
                     .|| ||.|| .||.||||||||||||||.|||||||||||.|||||.||.
BPUM_2804___y    492 AAGTCCAGC-AGTTTTCCCTAAATTCTCAATTCTTGATCCAGTGAACACT    540

BSNT_04622___    541 TTCACCGTACCTAAAAACCACACGATCTACGGGATGGTTGACATGATGAG    590
                     |||||.||.||.||||||||.|||||.||.||.||||||||.||||||..
BPUM_2804___y    541 TTCACAGTGCCAAAAAACCATACGATTTATGGCATGGTTGATATGATGTC    590

BSNT_04622___    591 CCACGTATTCGAACAATACTTCCATCATGTATCAAACACGCCGTATCAGG    640
                     .|||||.|||||||||||.||||||||...|..|||.||.||.||.||.|
BPUM_2804___y    591 TCACGTGTTCGAACAATATTTCCATCACACAGAAAATACACCTTACCAAG    640

BSNT_04622___    641 ACCGCATGTGTGAATCACTTCTGCGTACAGTCATTGAAACAGCGCCTAAG    690
                     ||||.|||||||||...|||||.|||||||||||.||||||||.||.|||
BPUM_2804___y    641 ACCGTATGTGTGAAGGGCTTCTTCGTACAGTCATCGAAACAGCACCGAAG    690

BSNT_04622___    691 CTGATTAATGATCTCGAAAATTACGAATTACGTGAGACGATCCTGTACAC    740
                     ||||||...|||||.||.||.||.||..|||||||.||||||.|.|.|||
BPUM_2804___y    691 CTGATTGGCGATCTAGAGAACTATGAGCTACGTGAAACGATCTTATTCAC    740

BSNT_04622___    741 AGGAACAATCGCATTAAACGGCATGCTTTCTATGGGTGCAAGAGGGGATT    790
                     .|||||.||.||..|.||.||.|||||.||.|||||.|||.|.||.||.|
BPUM_2804___y    741 TGGAACCATTGCGCTCAATGGTATGCTGTCAATGGGAGCACGTGGTGACT    790

BSNT_04622___    791 GGGCTACTCATAATATTGAACATGCAGTATCAGCCGTTTATGATATTCCG    840
                     ||||..||||.||.||.||.|||||.|||||.||.||||||||||||||.
BPUM_2804___y    791 GGGCATCTCACAACATCGAGCATGCGGTATCTGCTGTTTATGATATTCCT    840

BSNT_04622___    841 CATGCCGGCGGACTGGCGATTCTGTTCCCGAATTGGATGAGACACACATT    890
                     |||||.||||||||.|||||..||||||||||.|||||||..||     |
BPUM_2804___y    841 CATGCAGGCGGACTTGCGATCTTGTTCCCGAACTGGATGAAGCA-----T    885

BSNT_04622___    891 GTC-----TGAAAACCCTGCCCGCATGAAACAGCTTGCAGTTCGCGTGTT    935
                     |||     .||||||||.|.||||.|.|||||..|.||.||.|||||.||
BPUM_2804___y    886 GTCATTCAGGAAAACCCAGGCCGCTTTAAACAATTAGCGGTACGCGTATT    935

BSNT_04622___    936 TGATGTTGAAGAAGCAGGTAAAACAGATGAAGAAATCGCACTT-GAAGGT    984
                     .|||||.||....||.||.||||||||.||||||.| |..||| |||||.
BPUM_2804___y    936 CGATGTGGACCCTGCGGGCAAAACAGACGAAGAAGT-GGGCTTAGAAGGA    984

BSNT_04622___    985 ATCGATAAGCTGTCCGCATTCTGGACAAGCCTTGGCGCTCCGAACCGTCT   1034
                     |||||.||..||||.||.|||||||||||.||||||||.|||||||||.|
BPUM_2804___y    985 ATCGACAAATTGTCGGCTTTCTGGACAAGTCTTGGCGCACCGAACCGTTT   1034

BSNT_04622___   1035 TGCTGATTATGATATTAATGATGAGCAGCTTGACACAATCGCTGACAAGG   1084
                     .||.||.||||||||.||.||||||.|..||||...||||||.||....|
BPUM_2804___y   1035 AGCGGACTATGATATCAACGATGAGAAAATTGATTTAATCGCAGATCGTG   1084

BSNT_04622___   1085 CAATGGCTAACGGTACATTCGGCCAATTTAAATCACTCAACAAAGAAGAT   1134
                     |||||||...||||..|||.||.|||||||||...||.||||||||||||
BPUM_2804___y   1085 CAATGGCACGCGGTGAATTTGGTCAATTTAAAAAGCTAAACAAAGAAGAT   1134

BSNT_04622___   1135 GTGCTGTCAATTTTGAAAGCATCTCTATAA   1164
                     ||.||..|.||||||||.||.|||.|||||
BPUM_2804___y   1135 GTTCTAGCTATTTTGAATGCTTCTTTATAA   1164


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