Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04622 and BPUM_2804
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_04622___yugJ.1.24716.seq
# -bsequence dna-align/BPUM_2804___yugJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04622___yugJ-BPUM_2804___yugJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04622___yugJ-BPUM_2804___yugJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04622___yugJ
# 2: BPUM_2804___yugJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1180
# Identity: 879/1180 (74.5%)
# Similarity: 879/1180 (74.5%)
# Gaps: 32/1180 ( 2.7%)
# Score: 3151.0
#
#
#=======================================
BSNT_04622___ 1 ATGCAAAACTTTACATACTGGAATCCGACCAAATTAATTTTCGGGCGCGG 50
|||.|....|||||.||.|||||.||.||.||||||||.||.||....||
BPUM_2804___y 1 ATGGATCGATTTACTTATTGGAACCCAACGAAATTAATGTTTGGAAAGGG 50
BSNT_04622___ 51 CGAAGTGGAAAGACTTCCGGAGGAACTCAAACCTTACGGAAAAAACGTAT 100
.|||||...|...|||.|.||.|||||.||||..||||||||||||||||
BPUM_2804___y 51 AGAAGTTTCAGCCCTTTCAGATGAACTTAAACACTACGGAAAAAACGTAT 100
BSNT_04622___ 101 TGCTTGTGTACGGAGGCGGCAGCATTAAACGCAGCGGCCTGTATGATCAA 150
|.|||||.||.||.||.|||||.||||||||.|.||||||.|||||.|||
BPUM_2804___y 101 TACTTGTATATGGTGGAGGCAGTATTAAACGAAACGGCCTTTATGACCAA 150
BSNT_04622___ 151 GTGATTGAACAG----CTGAATAAAGCCGGAGCGACCGTGCA-TGAATTA 195
||..| ||| ||.||..||.|.|||||.||..| || ||||.|.
BPUM_2804___y 151 GTTGT----CAGCATTCTAAAAGAATCAGGAGCTACAAT-CACTGAACTT 195
BSNT_04622___ 196 GCAGGTGTGGAACCGAATCCTCGTGTGTCGACTGTTAATAAAGGTGTTGC 245
||.|||||.||.||.||.||.||..|..|.||.||.|..|||||.||||.
BPUM_2804___y 196 GCTGGTGTTGAGCCAAACCCGCGCTTAACAACGGTAAGAAAAGGGGTTGA 245
BSNT_04622___ 246 CATCTGTAA--AGAACAAAACATTGA-TTTCTTGCTGGCTGTTGGAGGCG 292
..|.||.|| ||||| |||.|||| |||.|| .||||.|||||.||||
BPUM_2804___y 246 GCTTTGCAAGGAGAAC--AACGTTGACTTTATT-TTGGCAGTTGGCGGCG 292
BSNT_04622___ 293 GAAGCGTAATCGACTG-TACAAAAGCGATTGCCGCAGGAGCGAAGTATGA 341
||||.||.||.|| || |||.|||||.||.||.||.|||||||||||.||
BPUM_2804___y 293 GAAGTGTCATTGA-TGCTACGAAAGCAATCGCAGCCGGAGCGAAGTACGA 341
BSNT_04622___ 342 TGGTGATGCATGGGATATCGTTACGAAAAAGCATCAGCCAAAAGATGCTT 391
|||.|||||.|||||||||||.|||...||.|||...||||..||.||..
BPUM_2804___y 342 TGGAGATGCTTGGGATATCGTGACGCGTAAACATGTCCCAATGGAAGCCA 391
BSNT_04622___ 392 TGCCATTCGGAACGGTATTGACTCTCGCTGCGACTGGTTCAGAAATGAAC 441
|.||.|||||.|||||.||.||.||.|||||.||.|||||.|||||||||
BPUM_2804___y 392 TTCCGTTCGGTACGGTGTTAACACTTGCTGCAACAGGTTCTGAAATGAAC 441
BSNT_04622___ 442 TCAGGATCTGTTATTACAAACTGGGAAACAAAAGAAAAATACGGCTGGGG 491
||.||.||.||.||.|||||||||||||||||.||.|||||.||||||||
BPUM_2804___y 442 TCTGGGTCAGTGATCACAAACTGGGAAACAAATGAGAAATATGGCTGGGG 491
BSNT_04622___ 492 CAG-CCCGCTTGTATTCCCTAAATTCTCGATTCTTGATCCGGTGAATACA 540
.|| ||.|| .||.||||||||||||||.|||||||||||.|||||.||.
BPUM_2804___y 492 AAGTCCAGC-AGTTTTCCCTAAATTCTCAATTCTTGATCCAGTGAACACT 540
BSNT_04622___ 541 TTCACCGTACCTAAAAACCACACGATCTACGGGATGGTTGACATGATGAG 590
|||||.||.||.||||||||.|||||.||.||.||||||||.||||||..
BPUM_2804___y 541 TTCACAGTGCCAAAAAACCATACGATTTATGGCATGGTTGATATGATGTC 590
BSNT_04622___ 591 CCACGTATTCGAACAATACTTCCATCATGTATCAAACACGCCGTATCAGG 640
.|||||.|||||||||||.||||||||...|..|||.||.||.||.||.|
BPUM_2804___y 591 TCACGTGTTCGAACAATATTTCCATCACACAGAAAATACACCTTACCAAG 640
BSNT_04622___ 641 ACCGCATGTGTGAATCACTTCTGCGTACAGTCATTGAAACAGCGCCTAAG 690
||||.|||||||||...|||||.|||||||||||.||||||||.||.|||
BPUM_2804___y 641 ACCGTATGTGTGAAGGGCTTCTTCGTACAGTCATCGAAACAGCACCGAAG 690
BSNT_04622___ 691 CTGATTAATGATCTCGAAAATTACGAATTACGTGAGACGATCCTGTACAC 740
||||||...|||||.||.||.||.||..|||||||.||||||.|.|.|||
BPUM_2804___y 691 CTGATTGGCGATCTAGAGAACTATGAGCTACGTGAAACGATCTTATTCAC 740
BSNT_04622___ 741 AGGAACAATCGCATTAAACGGCATGCTTTCTATGGGTGCAAGAGGGGATT 790
.|||||.||.||..|.||.||.|||||.||.|||||.|||.|.||.||.|
BPUM_2804___y 741 TGGAACCATTGCGCTCAATGGTATGCTGTCAATGGGAGCACGTGGTGACT 790
BSNT_04622___ 791 GGGCTACTCATAATATTGAACATGCAGTATCAGCCGTTTATGATATTCCG 840
||||..||||.||.||.||.|||||.|||||.||.||||||||||||||.
BPUM_2804___y 791 GGGCATCTCACAACATCGAGCATGCGGTATCTGCTGTTTATGATATTCCT 840
BSNT_04622___ 841 CATGCCGGCGGACTGGCGATTCTGTTCCCGAATTGGATGAGACACACATT 890
|||||.||||||||.|||||..||||||||||.|||||||..|| |
BPUM_2804___y 841 CATGCAGGCGGACTTGCGATCTTGTTCCCGAACTGGATGAAGCA-----T 885
BSNT_04622___ 891 GTC-----TGAAAACCCTGCCCGCATGAAACAGCTTGCAGTTCGCGTGTT 935
||| .||||||||.|.||||.|.|||||..|.||.||.|||||.||
BPUM_2804___y 886 GTCATTCAGGAAAACCCAGGCCGCTTTAAACAATTAGCGGTACGCGTATT 935
BSNT_04622___ 936 TGATGTTGAAGAAGCAGGTAAAACAGATGAAGAAATCGCACTT-GAAGGT 984
.|||||.||....||.||.||||||||.||||||.| |..||| |||||.
BPUM_2804___y 936 CGATGTGGACCCTGCGGGCAAAACAGACGAAGAAGT-GGGCTTAGAAGGA 984
BSNT_04622___ 985 ATCGATAAGCTGTCCGCATTCTGGACAAGCCTTGGCGCTCCGAACCGTCT 1034
|||||.||..||||.||.|||||||||||.||||||||.|||||||||.|
BPUM_2804___y 985 ATCGACAAATTGTCGGCTTTCTGGACAAGTCTTGGCGCACCGAACCGTTT 1034
BSNT_04622___ 1035 TGCTGATTATGATATTAATGATGAGCAGCTTGACACAATCGCTGACAAGG 1084
.||.||.||||||||.||.||||||.|..||||...||||||.||....|
BPUM_2804___y 1035 AGCGGACTATGATATCAACGATGAGAAAATTGATTTAATCGCAGATCGTG 1084
BSNT_04622___ 1085 CAATGGCTAACGGTACATTCGGCCAATTTAAATCACTCAACAAAGAAGAT 1134
|||||||...||||..|||.||.|||||||||...||.||||||||||||
BPUM_2804___y 1085 CAATGGCACGCGGTGAATTTGGTCAATTTAAAAAGCTAAACAAAGAAGAT 1134
BSNT_04622___ 1135 GTGCTGTCAATTTTGAAAGCATCTCTATAA 1164
||.||..|.||||||||.||.|||.|||||
BPUM_2804___y 1135 GTTCTAGCTATTTTGAATGCTTCTTTATAA 1164
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