Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04616 and BPUM_2800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_04616___yugN.1.24716.seq
# -bsequence dna-align/BPUM_2800___yugN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04616___yugN-BPUM_2800___yugN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04616___yugN-BPUM_2800___yugN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04616___yugN
# 2: BPUM_2800___yugN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity: 266/456 (58.3%)
# Similarity: 266/456 (58.3%)
# Gaps: 105/456 (23.0%)
# Score: 693.0
#
#
#=======================================
BSNT_04616___ 1 ATGATACCAATACCTTCC----------GCGATAGATGGGCAGTCTTTTC 40
|||||.|...||||.||| |.||.||.|...|| ||||.|
BPUM_2800___y 1 ATGATTCATGTACCATCCAGGCTGCCTGGTGAAAGCTTCTCA--CTTTAC 48
BSNT_04616___ 41 TGCTTCAAGAACTGGA-ACAAGTGATGAAGCCGCTCGGTTATGTGATAAA 89
|.|..|||| || || ||||||||||||||||||||||||.||
BPUM_2800___y 49 --CATTTAGAA---GAGAC----GATGAAGCCGCTCGGTTATGTGATTAA 89
BSNT_04616___ 90 CGGCGGCTGGGAATACGATCATGGCTACTTTGATTATAAAATTGATGATA 139
.||...||||||.|||||||||||.|||||||||||||||||||||.||.
BPUM_2800___y 90 TGGTAACTGGGATTACGATCATGGATACTTTGATTATAAAATTGATAATC 139
BSNT_04616___ 140 GAGACGGCTATTTATTTTTAAGAATTCCCGTCAATGC-GGTACAGGGCAG 188
|.||.||||||...|||.|.|||.||||..|.|..|| |..|.|||.|||
BPUM_2800___y 140 GTGATGGCTATACTTTTCTCAGAGTTCCTTTTACAGCTGAAAAAGGCCAG 189
BSNT_04616___ 189 TCTCGATGAACGAGGGGCGGCCGTCCGGA---TCGGAACGCCATTTATGC 235
||||||.|.|.|||.|..|..|| || |.|||...||||||.| |
BPUM_2800___y 190 -CTCGATCAGCCAGGCGTTGTGGT---GAAACTGGGAGATCCATTTCT-C 234
BSNT_04616___ 236 TGAGA-CAGGTGTTTCAGGCGGAT--GTT-GACGATCACGCCGAGGGAGG 281
|.|.| ||.||.|.||| .||| ||| ||.|||||.|| ||.|
BPUM_2800___y 235 TTAAAGCATGTCTATCA---AGATAAGTTAGATGATCATGC-----GATG 276
BSNT_04616___ 282 GCCTTTCCAAT-------CACTGTTTAATCAATTTTCC--GAACC----- 317
| ||...||| ||...|||||.||| |||| |||||
BPUM_2800___y 277 G--TTGGAAATGTTGGCGCATCCTTTAACCAA--TTCCAAGAACCAAAAG 322
BSNT_04616___ 318 GGAAAGGCGG-GACG---------------CGGAAATTGATCCGGCATTT 351
.|||||..|| ||.| |.|||||| |||.||
BPUM_2800___y 323 AGAAAGATGGAGATGTATCAAAAGCTTATACTGAAATT-----GGCTTT- 366
BSNT_04616___ 352 TTGGATATCGGCGCCTCTCTCGTGAAAGAATTGGAGGATGTTCTG--TTA 399
||.|||||.||.|||||.||.||.|..||| |||
BPUM_2800___y 367 ---------------TCACTCGTCAAGGAATTAGAAGACGCACTGCTTTA 401
BSNT_04616___ 400 CACTAG 405
.
BPUM_2800___y 402 A----- 402
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