Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04604 and BPUM_2795
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:18
# Commandline: needle
# -asequence dna-align/BSNT_04604___yugU.1.24716.seq
# -bsequence dna-align/BPUM_2795.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04604___yugU-BPUM_2795.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04604___yugU-BPUM_2795.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04604___yugU
# 2: BPUM_2795
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 451
# Identity: 287/451 (63.6%)
# Similarity: 287/451 (63.6%)
# Gaps: 101/451 (22.4%)
# Score: 953.5
#
#
#=======================================
BSNT_04604___ 1 ATGCTGAAAACACTGCAAATCA------AAACAACCAAACGAGATGAAAT 44
.|||||| |||||| ||||||..|.|||.|||||.||
BPUM_2795 1 ---ATGAAAA------AAATCAATATTCAAACAAATAGACGCGATGAGAT 41
BSNT_04604___ 45 GATTGATATCACCCGGGAGGTGGAAGCATTTCTTCAA---------GAAA 85
|||.||..|.|||.|.|||| |||.|||| ||||
BPUM_2795 42 GATCGACGTGACCAGCGAGG---------TTCATCAATATGTCAAGGAAA 82
BSNT_04604___ 86 CAGGT----ATAACG--AGCGGCGCAGCGCTGATTTACTGTCCGCATACG 129
||||| |.|||| |||| .||.|| ||||||||||.||||||
BPUM_2795 83 CAGGTAGTCAAAACGGAAGCG--TCATCG----TTTACTGTCCCCATACG 126
BSNT_04604___ 130 ACTGCGGGCATTACAATTAATGAAAATGCCGATCCGGACGTCAAAAAAGA 179
||.||.||.||.||.||||||||||||||.||.||.||.||.|||..|||
BPUM_2795 127 ACAGCAGGGATAACCATTAATGAAAATGCGGACCCAGATGTGAAACGAGA 176
BSNT_04604___ 180 TATGCTCAGAAGGTTTGATGAGGTATATCCGTGGGAACATGAGCTGGACC 229
|||||||.|.|||.||||.||.||.|.|||||||||||||..|..|||||
BPUM_2795 177 TATGCTCCGGAGGCTTGACGAAGTCTTTCCGTGGGAACATCCGAAGGACC 226
BSNT_04604___ 230 GCCATATGGAGGGCAATACAGCTGCACACATGAAGTCGAG---TACGGTC 276
||||||||||.||.||||||||.||.||.|||||..|||| || |.
BPUM_2795 227 GCCATATGGAAGGAAATACAGCCGCCCATATGAAAGCGAGCTATA---TG 273
BSNT_04604___ 277 GGAGCTTCACAGCATG----------TCATTGTGGAAAACGGCCGGCTCA 316
||.||.||.||||||| ||||.||| ..||..
BPUM_2795 274 GGTGCCTCGCAGCATGTTCTCATCCATCATGGTG----------ATCTTG 313
BSNT_04604___ 317 TTCTTGGAACGTGGCAGGGCATTTATTTCTGTGAATTTGACGGCCCTCGC 366
|.|||||.||.||||||||.|||||||||||||||||||||||
BPUM_2795 314 TCCTTGGCACATGGCAGGGAATTTATTTCTGTGAATTTGACGG------- 356
BSNT_04604___ 367 ACCCG-GACAT-GC--------TATA------TCA--AAATGATGGGATA 398
.||| ||||| || |||| ||| |||.|| .||
BPUM_2795 357 -GCCGAGACATCGCCATTTTTATATACAGGTGTCATCAAACGA----GTA 401
BSNT_04604___ 399 A 399
|
BPUM_2795 402 A 402
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