Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03890 and BPUM_2794
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03890___yrpB.1.24716.seq
# -bsequence dna-align/BPUM_2794.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03890___yrpB-BPUM_2794.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03890___yrpB-BPUM_2794.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03890___yrpB
# 2: BPUM_2794
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity: 654/1172 (55.8%)
# Similarity: 654/1172 (55.8%)
# Gaps: 268/1172 (22.9%)
# Score: 1484.5
#
#
#=======================================
BSNT_03890___ 1 ATGAATGAATTTATGAAGAAGTTTTCCTTAACAAAAC-------CGATTA 43
|||...|| |||.|.||| .||.|| .||||.| .|||.|
BPUM_2794 1 ATGGGGGA---TATCACGAA--ATTACT--GCAAATCAAATATGGGATCA 43
BSNT_03890___ 44 TTCAAGCTCCAATGGCTGGCGGTA----TTACAACGCCCCGA-CTTGCAT 88
|.|||||.||||||||.||.|| | |.|||.||| | ||.|.|.
BPUM_2794 44 TCCAAGCACCAATGGCAGGAGG-AGCCGTGACACCGC----AGCTGGTAG 88
BSNT_03890___ 89 CTGCAGTTTCGAATCAA---GGTGCTCTTGGCAGCTTAGCATCGGGGTAT 135
|.||.|||||| ||| ||.|..||||||||.||.|||...||.|||
BPUM_2794 89 CCGCTGTTTCG---CAATGCGGGGGACTTGGCAGTTTGGCAAGTGGATAT 135
BSNT_03890___ 136 CTTACGCCAGACC---TGCTAGAACAACAGATAAAAGAAATGTTTGAGCT 182
.|...|||.|||| || || .||.||.||.|||.||.|.....||||
BPUM_2794 136 GTGCAGCCTGACCATTTG--AG-GCAGCAAATCAAACAAGTCAAACAGCT 182
BSNT_03890___ 183 GA-CAGACGC----TCCTTTTCAAATTAATGTGTTTGTTCCGCTAGGTCT 227
|| ||..||| |||.|.|| |||||.|||||.||
BPUM_2794 183 GACCACTCGCCAGTTCCATGTC-----AATGTATTTGTACC--------- 218
BSNT_03890___ 228 AGAG---ATGCCACCAGAAGATCAGATTAAAAAGTGGA------------ 262
|||| || ..|.|||| ||| ||||||.|||
BPUM_2794 219 AGAGTCAAT---TTCTGAAG-TCA----AAAAAGAGGATGTTGCATTTTG 260
BSNT_03890___ 263 ----AAGAAAAC--------ATACCGTTAGCTAAT-------CAA--GTA 291
||| |||| |.|||...||||.|| |.| |.|
BPUM_2794 261 GGAGAAG-AAACTGCCAGCAAGACCAGCAGCTGATAGCCTGCCGAGCGAA 309
BSNT_03890___ 292 AATCAATTCACATCTGTACAAGAAGAGTGGGATGACTTCTATCAAAAAAT 341
||..|||| ||||.||||.||..|.||.|||||
BPUM_2794 310 AAGGAATT------------------GTGGCATGATTTTGAACAGAAAAT 341
BSNT_03890___ 342 TGA---TCTAATTTTAAAATATAAGGTTAAGGCTTGCT-------CATTC 381
..| |||| ||..||.|..|.| ||..|.|||.| |.|||
BPUM_2794 342 CAACATTCTA---TTGGAAGAAGACG-TACCGATTGTTTCCTTTACCTTC 387
BSNT_03890___ 382 ACTTTTGATCTGCCGCCTGAAGACGCAGTAAAGGA------GCTAAAAAC 425
.|||.| ||...|||| .|||.|| |.|.|||||
BPUM_2794 388 TCTTGT------CCAAATGAA-------CAAACGATACATCGTTTAAAAC 424
BSNT_03890___ 426 ----CGCTGGATGCTGTTTAATAGGAACCGCTTCAACAGTAGAAGAAGCA 471
.| |||| ||.||||||.||||||||..|||||..|||.||||||
BPUM_2794 425 AAAAGG--GGAT-CTTTTTAATCGGAACCGCCACAACAAAAGAGGAAGCA 471
BSNT_03890___ 472 TTG---TTAATGGAAGAACGGGGAATGGATATAGTAGTCCTTCAAGGAAG 518
||| |||..||||.|| ||.||||||....|.||.||.||||||||
BPUM_2794 472 TTGCTTTTAGAGGAAAAA---GGGATGGATGCCATTGTTCTGCAAGGAAG 518
BSNT_03890___ 519 TGAAGCCGGTGGACATCGCGGAGCATTCTTACCTTCCAAAGGTGAATCTG 568
||||||.||.||.||.||.||..|.||.||||||.|.|||||.||..||.
BPUM_2794 519 TGAAGCAGGAGGTCACCGAGGCACCTTTTTACCTGCAAAAGGAGATGCTC 568
BSNT_03890___ 569 CCGTAGGTTTAAT-------GGCTCTGA--TTCCACAAGCAGCAGATGCA 609
..||.||.|||.| ..|||||| || .|||.|||
BPUM_2794 569 TTGTGGGATTATTTAGCCTGTTCTCTGACGTT-------AAGCCGAT--- 608
BSNT_03890___ 610 CTG--AGCGTACCTGTCATAGCTGCTGGGGGAATGATAGACCATAG-AGG 656
||| | .|||||..|.||.||.||.||.||.||.|.|||.| .|| |||
BPUM_2794 609 CTGTCA-TGTACCATTGATCGCCGCAGGTGGGATTACAGATC-GAGCAGG 656
BSNT_03890___ 657 AGTAAAAGCAGCTTTAACCCTTGGAGCCCAAGGCGTTCAAATCGGTTCTG 706
.||..|||..|||.||.|.||||||||..|.|..|.||||.|.||..|..
BPUM_2794 657 TGTGGAAGTCGCTCTAGCGCTTGGAGCAGATGCGGCTCAAGTTGGCACAC 706
BSNT_03890___ 707 CCTTTTTAATTTGTCACGAGAGTAACGC-----ACATCCAGTACATAAAC 751
..||||||....||||.||.|||...|| || |||.|||||.
BPUM_2794 707 GATTTTTAGCCAGTCAGGAAAGTGCTGCGGCAGAC-----GTATATAAAA 751
BSNT_03890___ 752 AGAAAATACTAGAAGCAAACGAAGCA--GATACAAAGCTTACGACATTAT 799
||..|||..||.|.|||.| ||||| ||.||||||.|.||||...|.|
BPUM_2794 752 AGGCAATTTTACATGCAGA--AAGCAGTGAAACAAAGATCACGAGGCTTT 799
BSNT_03890___ 800 TTTCAGGTAAAGAG-GCCAGAGGAATCGTAAATAAATGGATGGAAGAAAA 848
|||||||.||| || ||.|||||.||.||.|||.|.||||||||.|||.|
BPUM_2794 800 TTTCAGGGAAA-AGAGCAAGAGGTATAGTGAATCAGTGGATGGAGGAAGA 848
BSNT_03890___ 849 AGAACAGTTTGAGACACAAA-----------CCCTTCCGTACCCTTATCA 887
| ||||| ||| ..|||||.||.||...|||
BPUM_2794 849 A----------AGACA-AAATGAAGATAGGGTTCTTCCTTATCCGGTTCA 887
BSNT_03890___ 888 AAATACACTAACGAAGGCAATGAG-ACAGCAG--GCTTCACTTCAAAATA 934
..||..|...||||...|||||.| |.||||| |||.|......||||
BPUM_2794 888 GCATGTATGGACGACACCAATGCGAAAAGCAGCCGCTGCGGCGGGAAAT- 936
BSNT_03890___ 935 ACCATGATCAGATGTCTTTATGGGCAGGTCAAGG-GATACGGTC--ATTG 981
|.||||||.|||.|..|.||||||||.||.|| |.| ||.| |||.
BPUM_2794 937 --CCTGATCAAATGGCCCTTTGGGCAGGACAGGGCGTT--GGCCGTATTC 982
BSNT_03890___ 982 ACT-GAGGAAATTT---CGGTTAAGCAGCTTTTAAATCA-GCTT----TG 1022
||| | |||| |.|||.||.|| |||| ||.| ||
BPUM_2794 983 ACTCG-----ATTTTAACCGTTGAGGAG-------ATCATGCATGAACTG 1020
BSNT_03890___ 1023 CCAAGAAGATATAAAAATATAG 1044
|.|.|.||||||
BPUM_2794 1021 --ACGCACATATAA-------- 1032
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