Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04600 and BPUM_2792
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:17
# Commandline: needle
# -asequence dna-align/BSNT_04600___tgl.1.24716.seq
# -bsequence dna-align/BPUM_2792___tgl.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04600___tgl-BPUM_2792___tgl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04600___tgl-BPUM_2792___tgl.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04600___tgl
# 2: BPUM_2792___tgl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity: 475/831 (57.2%)
# Similarity: 475/831 (57.2%)
# Gaps: 183/831 (22.0%)
# Score: 1173.5
#
#
#=======================================
BSNT_04600___ 1 ATGATTATTGTATCAGGACAATTGCTCCGTCCCCAGGATATTGA-AAATT 49
||||||||..|.|||||||| .|||| ||| ||||.
BPUM_2792___t 1 ATGATTATCCTTTCAGGACA-----------GCCAG-----TGACAAATG 34
BSNT_04600___ 50 GGCA----GATTGAT--------------CAAAATCTGA--------ATC 73
.||| |.||.|| |||||.|.|| ||
BPUM_2792___t 35 AGCAACTCGCTTCATTTCAGCTAGAAGGACAAAAGCGGATCATTTTGAT- 83
BSNT_04600___ 74 CGCTGTTAAAAG----AGATGATTGAGACGCCTGTTCAG-------TTTG 112
||.||||.||| |.||||| |.|..||..|.||| |.||
BPUM_2792___t 84 -GCAGTTACAAGCCTCAAATGAT--ACATTCCGCTACAGGCAAGCATCTG 130
BSNT_04600___ 113 A-TTATCATTCAATTGCTGAACTGATGT----TTGAGCTTAAAC--TGCG 155
| ||.|.||| |||.|| |||||.|.|||| |
BPUM_2792___t 131 ATTTGTTATT------------TGAAGTCACATTGAGATCAAACATT--- 165
BSNT_04600___ 156 GATGAATATTGTAGCAGCGGCAA-AGACGCTGCACAAAAGCGGGGCGAAG 204
|||||| ||.|||| ||| ..||.|.|||||.||.||....
BPUM_2792___t 166 -ATGAAT---------GCTGCAAGAGA-TTTGAATAAAAGTGGTGCCTCA 204
BSNT_04600___ 205 TTTGCCACTTTTTTAAAAACATACGGG---------AATACAACG--TAT 243
||||||| |||||.||| || ||| .||| |.|
BPUM_2792___t 205 TTTGCCA--TTTTTCAAA-------GGTCTCGTGCTAAT--GACGCCTTT 243
BSNT_04600___ 244 TGGAGGGTTTCACCGGAG--GGCGCCTTGGAGCTGAAATA-CA----GAA 286
|||.|.||.| |.|.|| ||.||..|.||||||...|| || |||
BPUM_2792___t 244 TGGCGCGTAT--CTGAAGCAGGAGCACTAGAGCTGCGCTATCAAGTCGAA 291
BSNT_04600___ 287 TGCCGCCTTCAAAAGCGATTCGGGACATTGCAGAGAACGGCCCGTTTTAT 336
||.||.|..|..|||...||||||...||.||.|||.|....|||
BPUM_2792___t 292 -----CCATCTAGGGGCATTAAAGACATTTTTGAAAATGGCTCACAATAT 336
BSNT_04600___ 337 GCGTTTGAATGCGCAACCGCAATCGTTATCATTTATTACTTGGCCTT--- 383
||.||||||||.||.|||||.||.||.|||.|.|.|||..|||.|.|
BPUM_2792___t 337 GCATTTGAATGTGCCACCGCCATTGTCATCGTCTTTTATATGGGCGTCTT 386
BSNT_04600___ 384 --AATCGATACAATCGGTGAAGATAAATTCAATGCC---AGCTTTGACAG 428
||.||.|| ||.||.||.||.||.|| || .||||.| |||
BPUM_2792___t 387 GCAAACGGTA-----GGAGACGAGAAGTTTAA--CCGAAGGCTTCG-CAG 428
BSNT_04600___ 429 AATTATTTTATATGACTGGCATTATGAGAAATTGCCGATCTATACGGAAA 478
..|.|..||.|||||.|||||||||||.|.||||.||||.|||||.||..
BPUM_2792___t 429 TCTCACCTTGTATGATTGGCATTATGATACATTGTCGATTTATACAGAGC 478
BSNT_04600___ 479 CAGGACACCACTTTTTCCTTGGAGATTGTTTGTATTTTAAGAATCCTGAA 528
.|||..|..|.|||.|...|||.|||||.||.|||||..|||||||.||.
BPUM_2792___t 479 GAGGGAATGATTTTATTTATGGGGATTGCTTATATTTCGAGAATCCAGAG 528
BSNT_04600___ 529 TTT---GATCCGCAAAAGGCGCAATGGAGAGGCGAAAATGTGATTTTAC- 574
||| .|||.|| ||.|.||.|||.|.||.|||||||||| |||||
BPUM_2792___t 529 TTTAGCTATCAGC---AGTCACAGTGGCGCGGGGAAAATGTGA-TTTACT 574
BSNT_04600___ 575 TGGGGGAAGATAAATATTTTGCCCATGGTCTTGGAATCTTA--AACGGAA 622
|.||.||||||.||||||..|..|||||.|||||.||.||| |.|||.|
BPUM_2792___t 575 TAGGAGAAGATCAATATTACGGACATGGACTTGGGATTTTAACAGCGGCA 624
BSNT_04600___ 623 AGCAAATTATAGATAAGCTGAATTCTTTTAGGAAAA------AAGGAGCC 666
.|||||||.|||||..|||| ||.||.|| .|||.||.
BPUM_2792___t 625 --GAAATTATTGATAAATTGAA------TAAGAGAAGGCGGCCAGGTGCT 666
BSNT_04600___ 667 TTACAGTCAGCCTACCTTCTGTCTCAGGCGACCAGACTGGATGT--TCCG 714
.|.||.||.||.||.||..||.|.|||.|.|||.|..||||||| |...
BPUM_2792___t 667 GTTCAATCTGCTTATCTATTGCCACAGACCACCCGGATGGATGTGATTTA 716
BSNT_04600___ 715 TCTC-------TTTTCCGCATCGTCCGCTAA 738
|||| |.||..||| |||||
BPUM_2792___t 717 TCTCAGGCAAATGTTTGGCA------GCTAA 741
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