Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04582 and BPUM_2783
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:13
# Commandline: needle
# -asequence dna-align/BSNT_04582___yubA.1.24716.seq
# -bsequence dna-align/BPUM_2783___yubA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04582___yubA-BPUM_2783___yubA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04582___yubA-BPUM_2783___yubA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04582___yubA
# 2: BPUM_2783___yubA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity: 842/1191 (70.7%)
# Similarity: 842/1191 (70.7%)
# Gaps: 72/1191 ( 6.0%)
# Score: 2840.5
#
#
#=======================================
BSNT_04582___ 1 GTGGAGACGTTGCAAACATGGAGCGGCAGATTCAAGCGA----TTCTTCT 46
.||.|..|..||||||..||||||.|..||||.| || ||.||||
BPUM_2783___y 1 ATGAATTCTATGCAAATGTGGAGCAGTCGATTTA---GAAAATTTTTTCT 47
BSNT_04582___ 47 TGGACAATAAGTTTGTTTTATTTTTGCTTGTGCTGCTGCTGATTGGTTTA 96
| ||.||.|||||||||.|.|||||.||.||.|||||..|.||.||.||.
BPUM_2783___y 48 T-GATAACAAGTTTGTTCTCTTTTTACTCGTCCTGCTATTAATCGGATTG 96
BSNT_04582___ 97 AATATTCTAGTATTTACAAAAACATCATTTATTTTCACCCCGATTATTGT 146
|||||.||.||.||.|..||||||||.|||||||||||.|||.|.|||||
BPUM_2783___y 97 AATATCCTTGTTTTCATGAAAACATCCTTTATTTTCACACCGCTCATTGT 146
BSNT_04582___ 147 TCTTCTCAAAACGATATCACTT-CCGATTATTTTGACAGGCATTGTTTTT 195
.||..|||||||.|| |..||| |||||||||||.||.||..|.||.|.|
BPUM_2783___y 147 ACTCGTCAAAACCAT-TGCCTTACCGATTATTTTAACGGGGGTCGTGTAT 195
BSNT_04582___ 196 TATCTGTTAAACCCGGTCGTCGATTTCCTTGAGAGAAGAAGAATAAGAAG 245
|||.|.|||||||||.|.|||.||||..|.|||||....|||.|.|.|.|
BPUM_2783___y 196 TATTTATTAAACCCGATTGTCAATTTGTTAGAGAGGTTTAGAGTGAAACG 245
BSNT_04582___ 246 AATCTATTCTATATTGCTGCTATATCTATTG--GTTATCGGGCTGATCAC 293
.||||.|||.||.||||| |.|||.||||| .||||.||..||||.||
BPUM_2783___y 246 GATCTTTTCGATTTTGCT--TTTATATATTGTCATTATTGGCATGATTAC 293
BSNT_04582___ 294 GATCACAATCGTGTCGATCATTCCCTTCTTAAAAGAACAAATTATGA--- 340
..|.||.||.|||||.||.|||||.||.|||.|||..|||||.||||
BPUM_2783___y 294 AGTAACGATTGTGTCTATTATTCCGTTTTTACAAGCGCAAATGATGAGCC 343
BSNT_04582___ 341 -GTTTAATCGACAACATCCCAAGATATGTGGATATCGTTGAAAATCAGAC 389
||||.|| |||.|.||.|.||||||.||||..||.|||.||||||.
BPUM_2783___y 344 TGTTTCAT----AACCTACCGAAATATGTTGATACGGTAGAAGATCAGAT 389
BSNT_04582___ 390 GAAACAGCTGATCGGCAGCAACTTCGTCAATCAGGCCCAGCAAACGACGA 439
.|.|||.||.|..||.|||||||||.|.|.|||.||.||..|||..|.||
BPUM_2783___y 390 TAGACAACTAACGGGAAGCAACTTCATTACTCAAGCGCAAAAAAACATGA 439
BSNT_04582___ 440 ACATCAATATATCTGATCTCGCAA-CAAAG-GTTTCAGATCAGGCAGCGA 487
|..|.||..|.|||||..|.|.|| ||||| | |||..|||.||..|||
BPUM_2783___y 440 ATTTTAACGTCTCTGAATTGGTAAGCAAAGCG--TCAAGTCAAGCGACGA 487
BSNT_04582___ 488 CAATTGTGAACAGTACCTTTACCGGCGTTGGGA-ATT-TTATCGGCGCCC 535
.||||.||.|.|||||||||||.||.||.|||| ||| ||| ||.||.|
BPUM_2783___y 488 AAATTTTGGAAAGTACCTTTACAGGAGTGGGGACATTCTTA--GGGGCGC 535
BSNT_04582___ 536 TGACTGAGATTATCATTTCAATCGTTACGGTTCCGTTTATCCTTTTCTAT 585
|.|||||.||.|||||.||.|||||.|||||||||||.||.||.||||||
BPUM_2783___y 536 TCACTGAAATCATCATCTCGATCGTGACGGTTCCGTTCATTCTGTTCTAT 585
BSNT_04582___ 586 TTGTTAAAGGACGGAAAAAAATTGCCGGTCTACATACTGAAGTTTGTTCC 635
||.|||||.||.||.||||||||.||.|.|||..|.|||||.|||.||||
BPUM_2783___y 586 TTATTAAAAGATGGCAAAAAATTACCTGACTATTTCCTGAAATTTATTCC 635
BSNT_04582___ 636 GACGCAATTGAAAGAACAGACATACACA----GT-CTTAAGCGAAATGAA 680
||...|.||.|.||| ||||||||| || |||.| |||||||||
BPUM_2783___y 636 GAATAAGTTTAGAGA----ACATACACATATCGTGCTTCA-CGAAATGAA 680
BSNT_04582___ 681 TCATCGGTTAAGCTCTTATATCAGAGGCCAGATCATTGTCAGCTTCTGTA 730
.|||||..|.|||||||||||....||.||||||||||||||||||||||
BPUM_2783___y 681 CCATCGCCTGAGCTCTTATATTCTTGGACAGATCATTGTCAGCTTCTGTA 730
BSNT_04582___ 731 TCGG-GTTTTTGCTGTTTATCGGTTATTTGATTATCGGGCTGGATTATGC 779
|.|| ||..|| ||.||.||.||||||.|||||||.||.||.||||||||
BPUM_2783___y 731 TTGGTGTGCTT-CTTTTAATTGGTTATCTGATTATTGGACTTGATTATGC 779
BSNT_04582___ 780 TTCATTGCTTGCAGTCATTGCGGCTTGCACAAGCATCGTTCCATATTTAG 829
.|...||||.||..||||||||||.||.|||||..|.||.||.||..|.|
BPUM_2783___y 780 GTTGCTGCTGGCCATCATTGCGGCATGTACAAGTGTGGTACCTTACCTTG 829
BSNT_04582___ 830 GGCCAACGATTGCCATTACGCCTGCGATTATCATTGCCATAGTGACATCG 879
|.||.||||||||.|||||.||.||||||.|||||||..|.||||||||.
BPUM_2783___y 830 GTCCTACGATTGCGATTACACCAGCGATTGTCATTGCACTTGTGACATCA 879
BSNT_04582___ 880 CCGCTCATGCTGCTTAAGCTGGTGATCGTTTGGACGATTGTTCAGCTGAT 929
||..|.|||||..|.||.|||.|.||.||.|||||..|.||.|||||.||
BPUM_2783___y 880 CCAGTGATGCTTTTAAAACTGATCATTGTCTGGACAGTGGTACAGCTCAT 929
BSNT_04582___ 930 TGAAGGGAAGCTGATCTCTCCGCAAATTATGGGAAAAAACCTTCACATCC 979
|||||||||..|.||.||.||.||..|||||||.|||||||||||.||||
BPUM_2783___y 930 TGAAGGGAAATTTATTTCACCTCAGGTTATGGGGAAAAACCTTCATATCC 979
BSNT_04582___ 980 ATCCGATTACGATTATTTTTCTGCTGTTAACAGCCGGCAAGCTGTTCGGC 1029
|.|||||.||||||||.|||.|.||.||||||||.||.||..||||..||
BPUM_2783___y 980 ACCCGATCACGATTATCTTTGTTCTCTTAACAGCAGGTAAATTGTTTAGC 1029
BSNT_04582___ 1030 GTTGTTGGAATCATTCTTGCGATTCCCGGC-TATGCGGTTGCC--AAAGT 1076
||.||.||.||||||.|||||||| |||.| |||||.|| || ||.||
BPUM_2783___y 1030 GTAGTCGGCATCATTGTTGCGATT-CCGACATATGCCGT--CCTGAAGGT 1076
BSNT_04582___ 1077 CATTACGACACATTTATTTGACTGGTTTAAAATGCGGTCACATTTATACG 1126
|||.|||||.||.||.|||||.|||||.||||||||.||..||||.||..
BPUM_2783___y 1077 CATCACGACCCACTTGTTTGATTGGTTCAAAATGCGATCCAATTTGTATA 1126
BSNT_04582___ 1127 ATGAAGAAAAAAATGAAAATACGCCGGGGCATAAAGTGTGA 1167
|.||||||||...|.||
BPUM_2783___y 1127 AAGAAGAAAAGGTTTAA------------------------ 1143
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