Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04398 and BPUM_2779

See Amino acid alignment / Visit BSNT_04398 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_04398___bioB.1.24716.seq
#    -bsequence dna-align/BPUM_2779___bioB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04398___bioB-BPUM_2779___bioB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04398___bioB-BPUM_2779___bioB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04398___bioB
# 2: BPUM_2779___bioB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity:     661/1111 (59.5%)
# Similarity:   661/1111 (59.5%)
# Gaps:         218/1111 (19.6%)
# Score: 1800.0
# 
#
#=======================================

BSNT_04398___      1 ATG--------AATCAAT--------GGATG-GAACTCGCAGACCGGGTG     33
                     |||        |||||.|        |||.| ||  |..||||....|.|
BPUM_2779___b      1 ATGGGGAAACCAATCACTTTGTCTTGGGAAGCGA--TAACAGAGAAAGCG     48

BSNT_04398___     34 CTGGCTGGAGCAGAAGT----GACTGACG----AAGAGGCGCTTTCA-AT     74
                     |||        |.||.|    ||.|.|||    ||||.|.|||   | ||
BPUM_2779___b     49 CTG--------AAAAATGAACGAATCACGCTGCAAGAAGGGCT---AGAT     87

BSNT_04398___     75 ATTACATTGTCCTGA---TGAAGAT-----ATTTTGCTAT---TAATGCA    113
                     ||       ||.|||   .||.|||     |||.|  |||   |.|||||
BPUM_2779___b     88 AT-------TCTTGAAGCGGACGATAGAGAATTAT--TATCGATCATGCA    128

BSNT_04398___    114 TGGAGCTTTTCATATCAGAAAACACTTTTATGGAAAAAAAGTAAAGCTCA    163
                     ||.|||.|.|||..|..||...||.||||.|..|||.||.||.||..|.|
BPUM_2779___b    129 TGCAGCCTATCAAGTACGATTTCATTTTTTTCAAAATAAGGTGAAATTAA    178

BSNT_04398___    164 ATATGATTATGAATGCGAAATCCGGGCTCTGCCCGGAAAACTGCGGCTAT    213
                     ||||||||.|.||.||.|||...||....||.||.|||||||||||.|||
BPUM_2779___b    179 ATATGATTTTTAACGCAAAAAGTGGTTATTGTCCTGAAAACTGCGGTTAT    228

BSNT_04398___    214 TGTTCACAGTCTGCGATTTCGAAAGCGCCGATTGAGTCTTATCGGATGGT    263
                     |||||||||||....|||||.||.||.|||.||||....|||...|||.|
BPUM_2779___b    229 TGTTCACAGTCGATCATTTCAAACGCACCGGTTGAACGATATACAATGCT    278

BSNT_04398___    264 GAATAAGGAAACGCT----GCTTGAAGGCGCGAAGCG---GGCGC--ACG    304
                     ..||.|..|||||.|    |||    |||||   |||   |||||  |.|
BPUM_2779___b    279 TGATCAAAAAACGATTGTGGCT----GGCGC---GCGTGAGGCGCTGAAG    321

BSNT_04398___    305 ATCTGAATATC-GGCACATATTGTATCGTGGCAAGCGGCAGAGGGCCGTC    353
                     |   |||.|.| ||.||.||||||||.||.||.|||||.||||..||.||
BPUM_2779___b    322 A---GAAAAGCGGGGACTTATTGTATTGTTGCGAGCGGGAGAGCACCTTC    368

BSNT_04398___    354 TAACAGAGAAGTGGATCAGGTCGTAGATGCGGTTCAGGAAATTAAAGAG-    402
                     |.|.||||||.|.|||.||||    ||  |||  || |.|.|.|||||| 
BPUM_2779___b    369 TCATAGAGAATTAGATGAGGT----GA--CGG--CA-GCAGTAAAAGAGA    409

BSNT_04398___    403 --ACGTATGGAC--------TGAAGGTTTGTGCGTGTCTCGGACTGT---    439
                       |||.|  |||        |||||||.|||||.|||||.||..|.|   
BPUM_2779___b    410 TCACGGA--GACCATGCCATTGAAGGTGTGTGCATGTCTTGGGTTATTAA    457

BSNT_04398___    440 -TGAAGCCAGAGCAGGCGAAGCGGCTCAAAGATGCCGGAGTAGACCGCTA    488
                      |||||.||    |.|||||||||||.||.||.||.||.||..|.||.||
BPUM_2779___b    458 ATGAAGACA----AAGCGAAGCGGCTGAAGGAAGCAGGGGTTCATCGGTA    503

BSNT_04398___    489 TAATCATAATTTGAATACGTCACA-GAGGA--ACCATTCAAACATCACGA    535
                     .|||||.|||.|.||||   |||| .|.||  |.|||.|..||||.||||
BPUM_2779___b    504 CAATCACAATATCAATA---CACATCAAGATCATCATCCTCACATTACGA    550

BSNT_04398___    536 CCTCACATACATACGATGACAGAGTCAATACGGTTGAAATCG---CAAAA    582
                     |..|.||||||||..|||||          ||.|||   |||   |..||
BPUM_2779___b    551 CAACTCATACATATCATGAC----------CGCTTG---TCGACCCTTAA    587

BSNT_04398___    583 GAA----------TCGGGGCTGTCTCCGTGTTCAGGCGCCATTATCGGGA    622
                     |||          ||.||..||||.||.||.|||||.|..|||||.||.|
BPUM_2779___b    588 GAAGGTCAAGCAGTCTGGCATGTCACCCTGCTCAGGGGTTATTATTGGAA    637

BSNT_04398___    623 TTAAGGAGACGAAACAGGATGTCATTGACATCGC---------CAAAAGC    663
                     |....||.||.||.|||.|..|..||||.||.||         ||.|   
BPUM_2779___b    638 TGGGTGAAACCAACCAGCAAATTGTTGAAATGGCTTTTGCGCTCAGA---    684

BSNT_04398___    664 TTGAAGGCCCTTGACGCGGATTCCATTCCTGTGAATTTTTTGCATGCAAT    713
                           |||.||||.||||||||||||||.||.||.|||.|.||||||||
BPUM_2779___b    685 ------GCCATTGATGCGGATTCCATTCCAGTCAACTTTCTTCATGCAAT    728

BSNT_04398___    714 TGATGGCACGCCGTTAGAAGGCGTCAA------------CGAATTAAACC    751
                     |||.||.||.||..|.||  ||.||||            |.|||.|||  
BPUM_2779___b    729 TGAAGGAACACCACTTGA--GCATCAAGAACGAACACATCCAATCAAA--    774

BSNT_04398___    752 CGCTGTATTGTTTAAAAGTGCTGGCGCTGTTCCGTTTTATCAATCCATCA    801
                         |.||||    ||||||.||||.||..|..|.|||.|.||||||.|.
BPUM_2779___b    775 ----GCATTG----AAAGTGTTGGCACTCATGAGGTTTGTTAATCCAACC    816

BSNT_04398___    802 AAAGAAATTCGCATTTCCGGAGGAAGAGAGGTCAATCTCCGCTCATTGCA    851
                     ||.||||||||..|.||.|||||.||||||.|||||.|.||..|..|.||
BPUM_2779___b    817 AAGGAAATTCGAGTATCTGGAGGCAGAGAGTTCAATTTACGGACGCTTCA    866

BSNT_04398___    852 GCCATTAGGGCTTTACGCCGCAAACTCCATTTTTGTCGGAGACTACTTAA    901
                     |||..|.|..|||||.||||||||.||||||||.||.||.||.||.||||
BPUM_2779___b    867 GCCGCTTGCCCTTTATGCCGCAAATTCCATTTTCGTAGGTGATTATTTAA    916

BSNT_04398___    902 CAACTGCCGGGCAAGAGG---AGACGGAGGATCATAAAATGCTGAGTGAT    948
                     ||||....||.||..|||   |.|||||..||||.|..||  ||| .|||
BPUM_2779___b    917 CAACAAAAGGTCAGCAGGTTCAAACGGATCATCACATCAT--TGA-AGAT    963

BSNT_04398___    949 TTAGGCTTTGAAGTTGAATCAGTCGAAGAA-ATGAAGGCCAGTTTAAGTG    997
                     |||||.|||||        || |.|||||| .||     ||.|.|||   
BPUM_2779___b    964 TTAGGTTTTGA--------CA-TAGAAGAATGTG-----CATTATAA---    996

BSNT_04398___    998 CGAAAAGCTGA   1008
                                
BPUM_2779___b    996 -----------    996


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