Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04398 and BPUM_2779
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04398___bioB.1.24716.seq
# -bsequence dna-align/BPUM_2779___bioB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04398___bioB-BPUM_2779___bioB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04398___bioB-BPUM_2779___bioB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04398___bioB
# 2: BPUM_2779___bioB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1111
# Identity: 661/1111 (59.5%)
# Similarity: 661/1111 (59.5%)
# Gaps: 218/1111 (19.6%)
# Score: 1800.0
#
#
#=======================================
BSNT_04398___ 1 ATG--------AATCAAT--------GGATG-GAACTCGCAGACCGGGTG 33
||| |||||.| |||.| || |..||||....|.|
BPUM_2779___b 1 ATGGGGAAACCAATCACTTTGTCTTGGGAAGCGA--TAACAGAGAAAGCG 48
BSNT_04398___ 34 CTGGCTGGAGCAGAAGT----GACTGACG----AAGAGGCGCTTTCA-AT 74
||| |.||.| ||.|.||| ||||.|.||| | ||
BPUM_2779___b 49 CTG--------AAAAATGAACGAATCACGCTGCAAGAAGGGCT---AGAT 87
BSNT_04398___ 75 ATTACATTGTCCTGA---TGAAGAT-----ATTTTGCTAT---TAATGCA 113
|| ||.||| .||.||| |||.| ||| |.|||||
BPUM_2779___b 88 AT-------TCTTGAAGCGGACGATAGAGAATTAT--TATCGATCATGCA 128
BSNT_04398___ 114 TGGAGCTTTTCATATCAGAAAACACTTTTATGGAAAAAAAGTAAAGCTCA 163
||.|||.|.|||..|..||...||.||||.|..|||.||.||.||..|.|
BPUM_2779___b 129 TGCAGCCTATCAAGTACGATTTCATTTTTTTCAAAATAAGGTGAAATTAA 178
BSNT_04398___ 164 ATATGATTATGAATGCGAAATCCGGGCTCTGCCCGGAAAACTGCGGCTAT 213
||||||||.|.||.||.|||...||....||.||.|||||||||||.|||
BPUM_2779___b 179 ATATGATTTTTAACGCAAAAAGTGGTTATTGTCCTGAAAACTGCGGTTAT 228
BSNT_04398___ 214 TGTTCACAGTCTGCGATTTCGAAAGCGCCGATTGAGTCTTATCGGATGGT 263
|||||||||||....|||||.||.||.|||.||||....|||...|||.|
BPUM_2779___b 229 TGTTCACAGTCGATCATTTCAAACGCACCGGTTGAACGATATACAATGCT 278
BSNT_04398___ 264 GAATAAGGAAACGCT----GCTTGAAGGCGCGAAGCG---GGCGC--ACG 304
..||.|..|||||.| ||| ||||| ||| ||||| |.|
BPUM_2779___b 279 TGATCAAAAAACGATTGTGGCT----GGCGC---GCGTGAGGCGCTGAAG 321
BSNT_04398___ 305 ATCTGAATATC-GGCACATATTGTATCGTGGCAAGCGGCAGAGGGCCGTC 353
| |||.|.| ||.||.||||||||.||.||.|||||.||||..||.||
BPUM_2779___b 322 A---GAAAAGCGGGGACTTATTGTATTGTTGCGAGCGGGAGAGCACCTTC 368
BSNT_04398___ 354 TAACAGAGAAGTGGATCAGGTCGTAGATGCGGTTCAGGAAATTAAAGAG- 402
|.|.||||||.|.|||.|||| || ||| || |.|.|.||||||
BPUM_2779___b 369 TCATAGAGAATTAGATGAGGT----GA--CGG--CA-GCAGTAAAAGAGA 409
BSNT_04398___ 403 --ACGTATGGAC--------TGAAGGTTTGTGCGTGTCTCGGACTGT--- 439
|||.| ||| |||||||.|||||.|||||.||..|.|
BPUM_2779___b 410 TCACGGA--GACCATGCCATTGAAGGTGTGTGCATGTCTTGGGTTATTAA 457
BSNT_04398___ 440 -TGAAGCCAGAGCAGGCGAAGCGGCTCAAAGATGCCGGAGTAGACCGCTA 488
|||||.|| |.|||||||||||.||.||.||.||.||..|.||.||
BPUM_2779___b 458 ATGAAGACA----AAGCGAAGCGGCTGAAGGAAGCAGGGGTTCATCGGTA 503
BSNT_04398___ 489 TAATCATAATTTGAATACGTCACA-GAGGA--ACCATTCAAACATCACGA 535
.|||||.|||.|.|||| |||| .|.|| |.|||.|..||||.||||
BPUM_2779___b 504 CAATCACAATATCAATA---CACATCAAGATCATCATCCTCACATTACGA 550
BSNT_04398___ 536 CCTCACATACATACGATGACAGAGTCAATACGGTTGAAATCG---CAAAA 582
|..|.||||||||..||||| ||.||| ||| |..||
BPUM_2779___b 551 CAACTCATACATATCATGAC----------CGCTTG---TCGACCCTTAA 587
BSNT_04398___ 583 GAA----------TCGGGGCTGTCTCCGTGTTCAGGCGCCATTATCGGGA 622
||| ||.||..||||.||.||.|||||.|..|||||.||.|
BPUM_2779___b 588 GAAGGTCAAGCAGTCTGGCATGTCACCCTGCTCAGGGGTTATTATTGGAA 637
BSNT_04398___ 623 TTAAGGAGACGAAACAGGATGTCATTGACATCGC---------CAAAAGC 663
|....||.||.||.|||.|..|..||||.||.|| ||.|
BPUM_2779___b 638 TGGGTGAAACCAACCAGCAAATTGTTGAAATGGCTTTTGCGCTCAGA--- 684
BSNT_04398___ 664 TTGAAGGCCCTTGACGCGGATTCCATTCCTGTGAATTTTTTGCATGCAAT 713
|||.||||.||||||||||||||.||.||.|||.|.||||||||
BPUM_2779___b 685 ------GCCATTGATGCGGATTCCATTCCAGTCAACTTTCTTCATGCAAT 728
BSNT_04398___ 714 TGATGGCACGCCGTTAGAAGGCGTCAA------------CGAATTAAACC 751
|||.||.||.||..|.|| ||.|||| |.|||.|||
BPUM_2779___b 729 TGAAGGAACACCACTTGA--GCATCAAGAACGAACACATCCAATCAAA-- 774
BSNT_04398___ 752 CGCTGTATTGTTTAAAAGTGCTGGCGCTGTTCCGTTTTATCAATCCATCA 801
|.|||| ||||||.||||.||..|..|.|||.|.||||||.|.
BPUM_2779___b 775 ----GCATTG----AAAGTGTTGGCACTCATGAGGTTTGTTAATCCAACC 816
BSNT_04398___ 802 AAAGAAATTCGCATTTCCGGAGGAAGAGAGGTCAATCTCCGCTCATTGCA 851
||.||||||||..|.||.|||||.||||||.|||||.|.||..|..|.||
BPUM_2779___b 817 AAGGAAATTCGAGTATCTGGAGGCAGAGAGTTCAATTTACGGACGCTTCA 866
BSNT_04398___ 852 GCCATTAGGGCTTTACGCCGCAAACTCCATTTTTGTCGGAGACTACTTAA 901
|||..|.|..|||||.||||||||.||||||||.||.||.||.||.||||
BPUM_2779___b 867 GCCGCTTGCCCTTTATGCCGCAAATTCCATTTTCGTAGGTGATTATTTAA 916
BSNT_04398___ 902 CAACTGCCGGGCAAGAGG---AGACGGAGGATCATAAAATGCTGAGTGAT 948
||||....||.||..||| |.|||||..||||.|..|| ||| .|||
BPUM_2779___b 917 CAACAAAAGGTCAGCAGGTTCAAACGGATCATCACATCAT--TGA-AGAT 963
BSNT_04398___ 949 TTAGGCTTTGAAGTTGAATCAGTCGAAGAA-ATGAAGGCCAGTTTAAGTG 997
|||||.||||| || |.|||||| .|| ||.|.|||
BPUM_2779___b 964 TTAGGTTTTGA--------CA-TAGAAGAATGTG-----CATTATAA--- 996
BSNT_04398___ 998 CGAAAAGCTGA 1008
BPUM_2779___b 996 ----------- 996
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