Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02116 and BPUM_2777
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02116___xre.1.24716.seq
# -bsequence dna-align/BPUM_2777___xre.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02116___xre-BPUM_2777___xre.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02116___xre-BPUM_2777___xre.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02116___xre
# 2: BPUM_2777___xre
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 434
# Identity: 221/434 (50.9%)
# Similarity: 221/434 (50.9%)
# Gaps: 148/434 (34.1%)
# Score: 440.5
#
#
#=======================================
BSNT_02116___ 1 AT-GATA----GGC--GGCAGAT------TGAAGAGTCTCAGAGGGAA-- 35
|| |||| |.| |..|||| |||| .|.||||.|||
BPUM_2777___x 1 ATGGATAATTTGACTGGAAAGATTTTAACTGAA----TTAAGAGAGAAGC 46
BSNT_02116___ 36 AAGGACACAGGAAG------------AAATCGCATCACACATCGGTGTGT 73
|.|||...||.||| ||| |.|| |||| .|
BPUM_2777___x 47 ATGGATGGAGCAAGTCAACGGTTGCTAAA-------AAAC-TCGG---CT 85
BSNT_02116___ 74 CACGGGCACGATATTCCCAC-TATGAAAATGGGCGAA--------GCGAA 114
.|..|||| ||..|||| ||||.||||.|| ||| |.|||
BPUM_2777___x 86 TAAAGGCA----ATGTCCACTTATGCAAATTGG-GAATATGGCTTGAGAA 130
BSNT_02116___ 115 ---CC----------TGATTACGACACACTCCAAAAGCTGGCTGA-TTA- 149
|| |||||..| |||| |.||.|| |||
BPUM_2777___x 131 AGCCCGATGGTGAAATGATTGTG---------AAAA--TCGCCGAGTTAT 169
BSNT_02116___ 150 -----CTTTCAAGTAACGACTGATTA-CTTATTAACGGGAAAAGACAAA- 192
.|.||| ||.||.|| ||| .|.||.||.||.||||||
BPUM_2777___x 170 ACGGGGTCTCA-------ACGGACTATCTT-CTCACAGGTAAGGACAAAG 211
BSNT_02116___ 193 ----AAATCCGATGACGATATGTTCT--CA---GATCCGGACCTGCAGCT 233
|| |.||||.||| ||| || |||||.||..||||..|
BPUM_2777___x 212 GCGGAA--CTGATGTCGA-----TCTTGCAGACGATCCTGATTTGCAAAT 254
BSNT_02116___ 234 TGC--ATACCGCGATATGC--AGGATTTTTCCCCAGAAAGCA--AACAGC 277
||| .||..|| ||| ..|||||||||..|| ||||| ||.| |
BPUM_2777___x 255 TGCGTTTAAGGC----TGCCTCCGATTTTTCCGAAG-AAGCACGAAGA-C 298
BSNT_02116___ 278 AGGCCATCGAATTTATCAACTATTTAAAAGAAAAAGAGA----------- 316
|..|||||||.|||||..||||..|.|||||||||||||
BPUM_2777___x 299 AAACCATCGATTTTATTCACTACATTAAAGAAAAAGAGAAACAAAAAGGT 348
BSNT_02116___ 317 --------AAAACCGCAAACCGAAAAATAAATAA 342
|||||.||.|..|||..|.|.|
BPUM_2777___x 349 CGTCAGCCAAAACAGCGAGACGACGATTGA---- 378
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