Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02126 and BPUM_2772

See Amino acid alignment / Visit BSNT_02126 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_02126___xpf.1.24716.seq
#    -bsequence dna-align/BPUM_2772___xpf.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02126___xpf-BPUM_2772___xpf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02126___xpf-BPUM_2772___xpf.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02126___xpf
# 2: BPUM_2772___xpf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity:     331/581 (57.0%)
# Similarity:   331/581 (57.0%)
# Gaps:         133/581 (22.9%)
# Score: 790.0
# 
#
#=======================================

BSNT_02126___      1 ATGCAAGACTTACTATTTGAATATAAACGCACGCTCAAACAAACAAGAAT     50
                     ||||||||.|||||..|.|||||.|||||..|..|.||..|..|.||||.
BPUM_2772___x      1 ATGCAAGATTTACTTATCGAATACAAACGTGCATTAAAGGATGCGAGAAA     50

BSNT_02126___     51 ACAATATAAACCGCTCGCT-GAG-----GCAGATGAATCCGTGCTCTCAG     94
                     |..||||.||||..|   | |||     |.|||..||   ..|||.||||
BPUM_2772___x     51 AAGATATGAACCATT---TAGAGAAAAAGAAGACAAA---CAGCTGTCAG     94

BSNT_02126___     95 CTGAAGAGCTGAAGGATAAAAAAATCATCAGAAATATGATTACTGATCTT    144
                     .|.|||||..|.|.|||||||||||.|||...|.||||.|.|..||||||
BPUM_2772___x     95 ATCAAGAGAAGCATGATAAAAAAATTATCGCTAGTATGGTCAGCGATCTT    144

BSNT_02126___    145 GAATATGTAACAGAATGGCTTGAAAAAGGAAGGCAGCCCG--GCATCAGA    192
                     |||||.||...||||||||||.|||..||.||||||||.|  |||  .||
BPUM_2772___x    145 GAATACGTCGTAGAATGGCTTCAAATTGGGAGGCAGCCAGGTGCA--CGA    192

BSNT_02126___    193 CGGGCGATT-GACCGGCGTGATGCCTACCAGCGGCTGATGATCAAGGACC    241
                     .|.| |||| |||.|.|||...|.|||.||||             |.|||
BPUM_2772___x    193 AGAG-GATTAGACAGACGTTCAGTCTATCAGC-------------GTACC    228

BSNT_02126___    242 CGAGAATCAT--CGAATCATTTTCCAGCGCTATGATGTTTGAGCC-----    284
                          |||.|  ||||      |||||    |.| ||||.|||.|     
BPUM_2772___x    229 -----ATCCTGGCGAA------TCCAG----AAG-TGTTAGAGGCTTTAT    262

BSNT_02126___    285 -----GGACGGACAGGTATC--AGAAGAAGACAGAGA-----------GA    316
                          |.|...|||..||||  ||||.|.||.|||||           ||
BPUM_2772___x    263 CACATGAATATACAATTATCCAAGAAAATGAAAGAGAATTCAGTGAACGA    312

BSNT_02126___    317 GAATTCGAGAA--GCATT-----AGCCCTG------TTAACGGACAGAGA    353
                     ||   |.||||  |.|||     |||||||      ||||||||..||||
BPUM_2772___x    313 GA---CAAGAAACGAATTGACGAAGCCCTGTCTGTTTTAACGGATCGAGA    359

BSNT_02126___    354 AAAGGAAATGTTTTTGCTGCATAAGGTAGAATGTTTTTCTTATGAACG-G    402
                     ||||||..|.||.||..||||||....|.||.|.||.||.| |.|.|| |
BPUM_2772___x    360 AAAGGACGTATTCTTCATGCATACAACACAAGGATTATCGT-TTAGCGAG    408

BSNT_02126___    403 ATCGCCGATC-TTCTCGGCGTAAAAAAATCGACAGTGCAAACGACGATTA    451
                     ||.| ||.|| |.||.|..||.||||||...||.||.|||         |
BPUM_2772___x    409 ATAG-CGGTCATGCTGGATGTGAAAAAAGGAACTGTCCAA---------A    448

BSNT_02126___    452 AAC-----GGGCGAGTT----TAAAGATG--CAAAGACAGCAGGAAGAA-    489
                     |||     |.|.|||.|    ..||||||  |||| |.||.| .||||| 
BPUM_2772___x    449 AACATATGGAGAGAGCTCGGACCAAGATGTCCAAA-AAAGTA-CAAGAAC    496

BSNT_02126___    490 ----ATGAATCGATCACTTGC--CTGA----    510
                         ||   ||||     .||  ||||    
BPUM_2772___x    497 GCCTAT---TCGA-----AGCAGCTGAATAG    519


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