Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02142 and BPUM_2762

See Amino acid alignment / Visit BSNT_02142 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:34
# Commandline: needle
#    -asequence dna-align/BSNT_02142.1.24716.seq
#    -bsequence dna-align/BPUM_2762.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02142-BPUM_2762.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02142-BPUM_2762.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02142
# 2: BPUM_2762
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     137/249 (55.0%)
# Similarity:   137/249 (55.0%)
# Gaps:          66/249 (26.5%)
# Score: 316.5
# 
#
#=======================================

BSNT_02142         1 GTG-TCAAAGGACAAACAACAGAAGAAG---GCTGTACATACAAAGAGCC     46
                     ||| .|||  |||.|| ||.||.|| ||   |||       |||..|||.
BPUM_2762          1 GTGAGCAA--GACTAA-AAAAGCAG-AGCCCGCT-------CAAGTAGCT     39

BSNT_02142        47 GG----------GAA----GCTCT--ATTTGATACAGCGGATTTGATTAA     80
                     ||          |||    |||.|  ||||||      ||..||.|...|
BPUM_2762         40 GGCGAAGAAAAAGAATTTGGCTTTTCATTTGA------GGCCTTAAAGGA     83

BSNT_02142        81 GCACGCGAAGGAACTGTTCGGCGTTAAGCCGGATATTCTTCAGGGGGC--    128
                     ||||...|||||.||.||.||.||.||.||.||.||.|||.|.||.||  
BPUM_2762         84 GCACAGTAAGGATCTTTTTGGGGTAAAACCAGAAATCCTTGAAGGTGCTC    133

BSNT_02142       129 ---TTTATTTGGCGTGGATCAACCACGTATGACGAAATCAGAAGCCAA--    173
                        |||||.|  |....||||||||   ||.||.|||.|||||||.||  
BPUM_2762        134 TTTTTTATAT--CAAACATCAACCA---ATTACAAAAACAGAAGCGAAAA    178

BSNT_02142       174 --CCAATTGATTCAAACATTTCTAACCAAGGAGGTCATGTCATCATGA-    219
                       |..||||||    .|.|||.|..||||||||||          |.| 
BPUM_2762        179 AGCACATTGAT----GCTTTTTTGTCCAAGGAGGT----------TTAA    213


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