Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02144 and BPUM_2761
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_02144___xkdK.1.24716.seq
# -bsequence dna-align/BPUM_2761___xkdK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02144___xkdK-BPUM_2761___xkdK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02144___xkdK-BPUM_2761___xkdK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02144___xkdK
# 2: BPUM_2761___xkdK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1495
# Identity: 945/1495 (63.2%)
# Similarity: 945/1495 (63.2%)
# Gaps: 242/1495 (16.2%)
# Score: 2897.0
#
#
#=======================================
BSNT_02144___ 1 ATGAATGGCGGAACATTTACAACAGG--CAAAGAAAAAGAACGTGCAGGC 48
|||||.||.||.|||||||||.|||| ||.|||||||| |||.|.|||
BPUM_2761___x 1 ATGAACGGAGGCACATTTACACCAGGTACAGAGAAAAAG--CGTCCTGGC 48
BSNT_02144___ 49 ATTTATTTTAACTTTAAAACGACGGCACAGGAGCGGGTATCAC--TCAGT 96
|||||.|||||.||||||||.||.|||.||.||| |.||.|| |..|.
BPUM_2761___x 49 ATTTACTTTAATTTTAAAACAACAGCAGAGCAGC--GAATTACTTTAGGC 96
BSNT_02144___ 97 GAACGGGGAACAGTCGCACTTCCGGTCGCATCA--AGCTGGGGCGAAGCG 144
||.||.||.||.||.|||||||| ||...|.| ||||||||.|||.|.
BPUM_2761___x 97 GATCGAGGTACGGTGGCACTTCC--TCTTGTGATGAGCTGGGGAGAACCA 144
BSNT_02144___ 145 AAAACGTTCGTCTCCATTTCCAGTGTTGAAGACCTAAACAAAAAAGTGGG 194
|||||.||..|.|||.||||||.|.|.||||||.||||.|||||.||.||
BPUM_2761___x 145 AAAACCTTTATTTCCGTTTCCAATATGGAAGACTTAAATAAAAAGGTTGG 194
BSNT_02144___ 195 CCTCAGCATTGATGACCCGTC-TTTATTGCTGCTGCGTGAAGCGAAGAAA 243
.||||..|||||||||..||| .||.|| ||..|.||||||||.||||||
BPUM_2761___x 195 ACTCAATATTGATGACAAGTCGCTTCTT-CTTTTCCGTGAAGCAAAGAAA 243
BSNT_02144___ 244 AATGCGAAAACGGTATTGATGTACCGTCTAACCGAAGGTGTCCGAGCGTC 293
||.|||.||||.||.|||.|.|||||..|||.||||||.|..|.|||...
BPUM_2761___x 244 AAAGCGCAAACAGTCTTGCTTTACCGCTTAAACGAAGGGGAGCCAGCCAA 293
BSNT_02144___ 294 TGCTGATATTGCTGAA------GGCGTCAAAGCAACTGCAGTATATGGCG 337
.|||||.||..|.||| |..||.|.|||.|.| |||||||
BPUM_2761___x 294 AGCTGAAATCTCAGAAAACTTTGTGGTTACAGCTAAT------TATGGCG 337
BSNT_02144___ 338 GAACAAAAGGTAATGACATTATCATCCGCATCAA-----TCAAAATGTAC 382
|...||||||.|||||.||.|.||| |||| ..|||||||||
BPUM_2761___x 338 GTCTAAAAGGAAATGAGATCACCAT-----TCAAGTGGCAGAAAATGTAC 382
BSNT_02144___ 383 TGGA---TGCTAATTCTTTCGATGTGACAACATATA-------TGGACGA 422
|.|| ..|.|| |.|||||..||| || ||||
BPUM_2761___x 383 TCGACAGCACCAA--------ACGTGACGTCAT-TACTTATCTTGGA--- 420
BSNT_02144___ 423 GTCAGA---GGTTGATAAACAGACTGTCAAAAAGGCTGAAGAATTAACAG 469
.|||| .||.|||||.||||.||
BPUM_2761___x 421 -ACAGATATTGTGGATAAGCAGATTG------------------------ 445
BSNT_02144___ 470 CTAACGGCTATGTCACTTTTACCGGAACAGGCGATCTT------------ 507
|.|||| |||||| || ||||||
BPUM_2761___x 446 -TGACGG--ATGTCA----------AA-----GATCTTGTGAAAAACAAA 477
BSNT_02144___ 508 --TCTTCAACGATTCCTCTCACTGGATCAGAAGGAGA---------CACT 546
|.||||| .|..|||| .|||||.|| |||.
BPUM_2761___x 478 TATGTTCAA--------TTTTCTGG---TGAAGGGGAAGCAGTGATCACA 516
BSNT_02144___ 547 GCAGCTGAGACGCTGAATGCATCCGCGGGAATCCGTTTATCTGGCGGTAC 596
||.|.||.|.|.||.| |||| |
BPUM_2761___x 517 GCTGGTGTGGCACTAA---------------------------GCGG--C 537
BSNT_02144___ 597 GGATAAA-----GCCCCTGTCAA----CTCCGATTATACAGATTTCTTAG 637
|||.||| | ||.||| |.|.||||||||||.||||.|||
BPUM_2761___x 538 GGAAAAAACGGTG----TGGCAAGTGTCGCAGATTATACAGCTTTCCTAG 583
BSNT_02144___ 638 CCGCGGCTGAAACGGAGAGCTTTGATGTGATTGCGCTGCCTGTTGCAGAA 687
..||.||.|||||.||...|||||||||.||||||||.||.||.| |.||
BPUM_2761___x 584 AAGCAGCAGAAACAGAATACTTTGATGTCATTGCGCTCCCAGTCG-ATAA 632
BSNT_02144___ 688 -GGTGACCAGTTGAAGGCGACGTTTGCTGCTTTCATTAAACGCCTTCGCG 736
.||||.||.||.||.||.||.||.|||.|.||.||..|.||.||.||.|
BPUM_2761___x 633 TAGTGAGCAATTAAAAGCAACCTTCGCTTCGTTTATCGAGCGTCTACGTG 682
BSNT_02144___ 737 ACGGCCAAGGACAAAAAGTGCAAGGCGTCACAGCCAATTATGCCGGTGAT 786
|....|||||||..||.||.||||||||....||.||.|||||.|.|||.
BPUM_2761___x 683 ATAAGCAAGGACGTAAGGTTCAAGGCGTTGTCGCGAACTATGCAGCTGAC 732
BSNT_02144___ 787 TATGAAGGCATCATCAACGTAACTGAG-GGTGTGCTGCTTGAAGATGGCA 835
.|.||||||||||||||.||.|| .|| |||||..||||.||||||||.|
BPUM_2761___x 733 CAGGAAGGCATCATCAATGTGAC-AAGTGGTGTCGTGCTGGAAGATGGAA 781
BSNT_02144___ 836 CGGAAGTTACACCCG-ACAAAGCAACAGCTTGGGTAGCTGGAGCGAGTGC 884
|.|||.|.|||||.| .|||| |||||||||||||.||.||.||.|||||
BPUM_2761___x 782 CAGAACTAACACCTGCTCAAA-CAACAGCTTGGGTCGCAGGGGCTAGTGC 830
BSNT_02144___ 885 AGGAGCAACCTTTAACCAATCACTTACATTTGTAGAGTACGGAGGCGCAG 934
|||.||||.|||.||.||.|||||.||.|||||.||.||||.|||.||||
BPUM_2761___x 831 AGGTGCAAACTTCAATCAGTCACTCACCTTTGTTGAATACGAAGGAGCAG 880
BSNT_02144___ 935 TTGATGTGTTACACCGCCTCGACCACGAT-----------ACGATTGTTG 973
|.|||...|||.|.|||||.||..|.||| .|||||.|
BPUM_2761___x 881 TGGATACATTAGAACGCCTTGATAATGATCAAGTAGAATACCGATTAT-- 928
BSNT_02144___ 974 AACGTCTGGGCA-AAGGTGAATTTTTATTCACATTCGACGCCCGTGATAA 1022
|| ||||.||.||..|.|||||.||.||.||..|.||
BPUM_2761___x 929 ----------CACAAGGGGAGTTCCTCTTCACCTTTGATGCGAGAGA--- 965
BSNT_02144___ 1023 ATCC-----GTCAGCGTAGAAAAGGACATTAACTC----ACTCGTGACGT 1063
|| ||.||.||.|||||.||.|||||||| ||..|| |
BPUM_2761___x 966 --CCGCACGGTGAGTGTTGAAAAAGATATTAACTCTTTAACAAGT----T 1009
BSNT_02144___ 1064 TCACAGCTGAGAAAAACAAGAAATTTGCGAAGAACAAAATCGTTCGTGTC 1113
||||||||||.||.||..||.||.|.|||||.|||||||||.|||||||.
BPUM_2761___x 1010 TCACAGCTGAAAAGAATCAGCAAATGGCGAAAAACAAAATCATTCGTGTG 1059
BSNT_02144___ 1114 CTGGATGCTGTGAATAATGATTTAACACGCGAGCTGAAAGCCTTAATTAA 1163
||.|||||..|.||.|||||||||||...|||..|.|||....|.|||||
BPUM_2761___x 1060 CTTGATGCCATCAACAATGATTTAACGTTCGAATTAAAAAATCTGATTAA 1109
BSNT_02144___ 1164 ATCAAGAAAAGGCAGCGGAAGCGATATCCCGGCATCTGAAGACGGACTGC 1213
||.|.|.||||.||..||.|..||.|||||.|||||.||.||.|||.|||
BPUM_2761___x 1110 ATTACGCAAAGCCAATGGCAATGACATCCCAGCATCCGATGATGGAGTGC 1159
BSNT_02144___ 1214 AGTATGTAAAAACGATGATCACGCAATACATGACAACA-CTTCAGGAT-G 1261
|...|||.|||||..||||.||.||.||..|.|| .|| |||||.||| |
BPUM_2761___x 1160 AACTTGTGAAAACACTGATTACACAGTATCTCAC-GCAGCTTCAAGATGG 1208
BSNT_02144___ 1262 CAGGCGGCATCACTGGCTTTGATTCCGATGAAGATATCACAATTTCA--- 1308
|| |||||||.||.||||||.||||.||...||||||| .|||
BPUM_2761___x 1209 CA-GCGGCATTACAGGCTTTAATTCAGAAACAGATATC-----GTCATCG 1252
BSNT_02144___ 1309 --ATGAATGAAGATCGTGACGGCTTCTTGATTGACCTGGCTGTACAGCCT 1356
.|.||||||||||||||.||.||..|.||.||.||.|||||.|||||.
BPUM_2761___x 1253 GTCTCAATGAAGATCGTGATGGATTTATCATCGATCTAGCTGTTCAGCCA 1302
BSNT_02144___ 1357 GTCGACGCAGCAGAAAAATTCTACTTTAATGTGGAGGTAAACTAA 1401
||.||.|||||||||||||||||.||.|||||||||||.||.|||
BPUM_2761___x 1303 GTAGATGCAGCAGAAAAATTCTATTTCAATGTGGAGGTGAAGTAA 1347
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