Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02152 and BPUM_2754

See Amino acid alignment / Visit BSNT_02152 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_02152___xkdQ.1.24716.seq
#    -bsequence dna-align/BPUM_2754___yqbQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02152___xkdQ-BPUM_2754___yqbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02152___xkdQ-BPUM_2754___yqbQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02152___xkdQ
# 2: BPUM_2754___yqbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity:     684/1051 (65.1%)
# Similarity:   684/1051 (65.1%)
# Gaps:         113/1051 (10.8%)
# Score: 2091.0
# 
#
#=======================================

BSNT_02152___      1 ATGATAGAACTGTTCGTCATTAAAGACACAG-AGTGGC-------TTGAG     42
                     .||||.||.||.||.|.|||        ||| ||.|||       .||||
BPUM_2754___y      1 TTGATCGAGCTTTTTGCCAT--------CAGAAGCGGCACCATGTATGAG     42

BSNT_02152___     43 CTGGTTGCTGAAAGCGTATCGCTTGAGGGCCATCGTTATCAGGCGCCGCG     92
                     ||.||..|.||.||.||..|.|||.||||.||..|.|||||.||.||.||
BPUM_2754___y     43 CTTGTCACAGAGAGTGTGACACTTCAGGGGCAAAGGTATCAAGCCCCTCG     92

BSNT_02152___     93 CTCCATTGAAGCGACCATCGTCACCAAACAGGGCGACCAGACGTATTACA    142
                     |||.|||.||||.|..||..|.||.|||||.|||...||.||.||||||.
BPUM_2754___y     93 CTCTATTCAAGCAAATATTATTACTAAACAAGGCAGTCAAACATATTACC    142

BSNT_02152___    143 GTGTCTCAGAAGGAGATACGG-TCTTGTTTAAATGGAAGGGAAAAGAGCT    191
                     |||||||||||||.||.|||| |||| |||||||||||.|||||||||||
BPUM_2754___y    143 GTGTCTCAGAAGGGGACACGGTTCTT-TTTAAATGGAAAGGAAAAGAGCT    191

BSNT_02152___    192 GTTTCGGGGCATTGT-TTTTGCAAGAACCCCGGACG--------AGCATA    232
                     |||..|.|||||||| ||||        |.||||||        ||.| |
BPUM_2754___y    192 GTTCAGAGGCATTGTGTTTT--------CTCGGACGCCTGTTGAAGGA-A    232

BSNT_02152___    233 CGCTTGCCTTCAGCGCTTATGACATGCTTCAGTACCTGGTCAAAAACCAG    282
                     ..||..||||.|.|||.||.|||||||||||.||..||||.||||||||.
BPUM_2754___y    233 AACTAACCTTTACCGCATACGACATGCTTCAATATTTGGTGAAAAACCAA    282

BSNT_02152___    283 GATATGTACGTGTTTTCCAATCAGCGGGCTGACCAGATCATCAGAAGGAT    332
                     |||.|.||.||.|||||.||.||..|.||.||.||.||..|.|||.||| 
BPUM_2754___y    283 GATGTCTATGTTTTTTCAAAACAAAGAGCAGATCAAATTTTGAGACGGA-    331

BSNT_02152___    333 TGCTAG----TGACTTCCAGATACCGACAACCTCGATCGCAAACACAGGC    378
                        |||    ||||||.||.||.||.|..|||||.|||||.||.||.||.
BPUM_2754___y    332 ---TAGGGGCTGACTTTCAAATCCCCATGACCTCCATCGCCAATACCGGT    378

BSNT_02152___    379 CATACGATCAAAAGTCTTGTCATTAAAAATGATACGACATTGTATGACAT    428
                     |||...||.|||...||.||..|||||||||||||||...|.||||||||
BPUM_2754___y    379 CATGTCATAAAATCGCTAGTGTTTAAAAATGATACGAGCCTATATGACAT    428

BSNT_02152___    429 CATATTAAAAGCGCTGAAACAGACGAAAAGC--CAGACAGGACGACATTA    476
                     .||..|.|||||..|.|||.|.||  |||||  ||.||.||..||.|.||
BPUM_2754___y    429 GATTCTGAAAGCATTAAAAGAAAC--AAAGCGGCAAACCGGCAGAAACTA    476

BSNT_02152___    477 CCAGCTGTATTCGGAAAAAGGAAAGCTCGGTCTGCGCGCTTGGCCAGATC    526
                     .||..|.|||||.|..|||||||||.|.||.|||.|.|||||||||||||
BPUM_2754___y    477 TCAAATCTATTCTGCTAAAGGAAAGATGGGGCTGAGAGCTTGGCCAGATC    526

BSNT_02152___    527 CGTCAGAG---GTATGGGTGCTTGAAACGGGCGTCAATATCACGGGCTAC    573
                        |||||   ||||||||..|||||.|.||.||||||.|||..|.|||.
BPUM_2754___y    527 ---CAGAGGACGTATGGGTCATTGAATCAGGTGTCAATCTCATTGACTAT    573

BSNT_02152___    574 CAATACAGCACTTCTATAAACGACACTGCTACTCGGGTGGTGCTTCGC--    621
                     ||.|||||.||.||.||..|.||.||.||.|||||.||...|||.|||  
BPUM_2754___y    574 CAGTACAGTACCTCGATTGAAGAAACAGCCACTCGTGTTAAGCTGCGCAC    623

BSNT_02152___    622 --CGGCAGAAGGAC--------AATAAGACATATAAAGCC------TCTG    655
                       |.|||||.|.||        |||||||   |.||||.|      ||.|
BPUM_2754___y    624 GTCTGCAGATGAACAGGGGAAAAATAAGA---AAAAAGGCAGCAAATCAG    670

BSNT_02152___    656 CCA---------------AGGA-----CAGTTCAGGCTTAAATAAATACG    685
                     ..|               ||||     |||.||||     |.||||||||
BPUM_2754___y    671 AGATTGTAGTGGTCGAACAGGATAAAGCAGGTCAG-----AGTAAATACG    715

BSNT_02152___    686 GTGTGCTTCAATATACGGAAACGGTCACAGATGACATCAACCAGGCACAG    735
                     ||.|..|.|||.||...||.|||||.||||...|.||||||||..|.|||
BPUM_2754___y    716 GTATTTTACAACATGTTGAGACGGTTACAGGGCAAATCAACCAACCGCAG    765

BSNT_02152___    736 CTTCAGCAGCGGGCAGATGTACGTCTTGCTGAAAAAAAGGGCGTGAAAAA    785
                     ||.||..|..|.||..|.|||||.||.||.||.|||||.|||||||||.|
BPUM_2754___y    766 CTGCAAAAAAGAGCCAAAGTACGGCTGGCAGAGAAAAAAGGCGTGAAACA    815

BSNT_02152___    786 AGAACTGAAAAATATTCAGGCAGTGGGCATCCCGGAAGTGCAGAGCGG-C    834
                     ||||.|.||||..||.||.||..||||.||.||.|||.||||.||||| |
BPUM_2754___y    816 AGAAGTCAAAAGCATCCAAGCGCTGGGTATTCCTGAACTGCAAAGCGGTC    865

BSNT_02152___    835 TTGCCTGTCTATATTTCGATTCCGGAGGCCGGCATCAAGAAAACCTATTG    884
                     || ||..|||||.|....||.||.||...|..|.|.||.||||||||.||
BPUM_2754___y    866 TT-CCGATCTATTTGAAAATCCCTGAAATCAACGTGAAAAAAACCTACTG    914

BSNT_02152___    885 GGTAGATACGGACCGGCATGAATTTAAAGGAACGAAACATACGATGACGA    934
                     |.|.|||...|||...||||||||.|..|||..||||||.||.|||||.|
BPUM_2754___y    915 GATCGATCAAGACAAACATGAATTCAGTGGAGTGAAACACACCATGACAA    964

BSNT_02152___    935 TCGATGTTGTCGAAAAGAATACGATGCCGGAAGG-------AGTTTCCTG    977
                     |.|||||.||.||.||.|||.|.||.|| .||||       ||   |.||
BPUM_2754___y    965 TTGATGTCGTTGAGAAAAATTCCATTCC-AAAGGGTGATCAAG---CGTG   1010

BSNT_02152___    978 A    978
                     |
BPUM_2754___y   1011 A   1011


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