Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02152 and BPUM_2754
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_02152___xkdQ.1.24716.seq
# -bsequence dna-align/BPUM_2754___yqbQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02152___xkdQ-BPUM_2754___yqbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02152___xkdQ-BPUM_2754___yqbQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02152___xkdQ
# 2: BPUM_2754___yqbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity: 684/1051 (65.1%)
# Similarity: 684/1051 (65.1%)
# Gaps: 113/1051 (10.8%)
# Score: 2091.0
#
#
#=======================================
BSNT_02152___ 1 ATGATAGAACTGTTCGTCATTAAAGACACAG-AGTGGC-------TTGAG 42
.||||.||.||.||.|.||| ||| ||.||| .||||
BPUM_2754___y 1 TTGATCGAGCTTTTTGCCAT--------CAGAAGCGGCACCATGTATGAG 42
BSNT_02152___ 43 CTGGTTGCTGAAAGCGTATCGCTTGAGGGCCATCGTTATCAGGCGCCGCG 92
||.||..|.||.||.||..|.|||.||||.||..|.|||||.||.||.||
BPUM_2754___y 43 CTTGTCACAGAGAGTGTGACACTTCAGGGGCAAAGGTATCAAGCCCCTCG 92
BSNT_02152___ 93 CTCCATTGAAGCGACCATCGTCACCAAACAGGGCGACCAGACGTATTACA 142
|||.|||.||||.|..||..|.||.|||||.|||...||.||.||||||.
BPUM_2754___y 93 CTCTATTCAAGCAAATATTATTACTAAACAAGGCAGTCAAACATATTACC 142
BSNT_02152___ 143 GTGTCTCAGAAGGAGATACGG-TCTTGTTTAAATGGAAGGGAAAAGAGCT 191
|||||||||||||.||.|||| |||| |||||||||||.|||||||||||
BPUM_2754___y 143 GTGTCTCAGAAGGGGACACGGTTCTT-TTTAAATGGAAAGGAAAAGAGCT 191
BSNT_02152___ 192 GTTTCGGGGCATTGT-TTTTGCAAGAACCCCGGACG--------AGCATA 232
|||..|.|||||||| |||| |.|||||| ||.| |
BPUM_2754___y 192 GTTCAGAGGCATTGTGTTTT--------CTCGGACGCCTGTTGAAGGA-A 232
BSNT_02152___ 233 CGCTTGCCTTCAGCGCTTATGACATGCTTCAGTACCTGGTCAAAAACCAG 282
..||..||||.|.|||.||.|||||||||||.||..||||.||||||||.
BPUM_2754___y 233 AACTAACCTTTACCGCATACGACATGCTTCAATATTTGGTGAAAAACCAA 282
BSNT_02152___ 283 GATATGTACGTGTTTTCCAATCAGCGGGCTGACCAGATCATCAGAAGGAT 332
|||.|.||.||.|||||.||.||..|.||.||.||.||..|.|||.|||
BPUM_2754___y 283 GATGTCTATGTTTTTTCAAAACAAAGAGCAGATCAAATTTTGAGACGGA- 331
BSNT_02152___ 333 TGCTAG----TGACTTCCAGATACCGACAACCTCGATCGCAAACACAGGC 378
||| ||||||.||.||.||.|..|||||.|||||.||.||.||.
BPUM_2754___y 332 ---TAGGGGCTGACTTTCAAATCCCCATGACCTCCATCGCCAATACCGGT 378
BSNT_02152___ 379 CATACGATCAAAAGTCTTGTCATTAAAAATGATACGACATTGTATGACAT 428
|||...||.|||...||.||..|||||||||||||||...|.||||||||
BPUM_2754___y 379 CATGTCATAAAATCGCTAGTGTTTAAAAATGATACGAGCCTATATGACAT 428
BSNT_02152___ 429 CATATTAAAAGCGCTGAAACAGACGAAAAGC--CAGACAGGACGACATTA 476
.||..|.|||||..|.|||.|.|| ||||| ||.||.||..||.|.||
BPUM_2754___y 429 GATTCTGAAAGCATTAAAAGAAAC--AAAGCGGCAAACCGGCAGAAACTA 476
BSNT_02152___ 477 CCAGCTGTATTCGGAAAAAGGAAAGCTCGGTCTGCGCGCTTGGCCAGATC 526
.||..|.|||||.|..|||||||||.|.||.|||.|.|||||||||||||
BPUM_2754___y 477 TCAAATCTATTCTGCTAAAGGAAAGATGGGGCTGAGAGCTTGGCCAGATC 526
BSNT_02152___ 527 CGTCAGAG---GTATGGGTGCTTGAAACGGGCGTCAATATCACGGGCTAC 573
||||| ||||||||..|||||.|.||.||||||.|||..|.|||.
BPUM_2754___y 527 ---CAGAGGACGTATGGGTCATTGAATCAGGTGTCAATCTCATTGACTAT 573
BSNT_02152___ 574 CAATACAGCACTTCTATAAACGACACTGCTACTCGGGTGGTGCTTCGC-- 621
||.|||||.||.||.||..|.||.||.||.|||||.||...|||.|||
BPUM_2754___y 574 CAGTACAGTACCTCGATTGAAGAAACAGCCACTCGTGTTAAGCTGCGCAC 623
BSNT_02152___ 622 --CGGCAGAAGGAC--------AATAAGACATATAAAGCC------TCTG 655
|.|||||.|.|| ||||||| |.||||.| ||.|
BPUM_2754___y 624 GTCTGCAGATGAACAGGGGAAAAATAAGA---AAAAAGGCAGCAAATCAG 670
BSNT_02152___ 656 CCA---------------AGGA-----CAGTTCAGGCTTAAATAAATACG 685
..| |||| |||.|||| |.||||||||
BPUM_2754___y 671 AGATTGTAGTGGTCGAACAGGATAAAGCAGGTCAG-----AGTAAATACG 715
BSNT_02152___ 686 GTGTGCTTCAATATACGGAAACGGTCACAGATGACATCAACCAGGCACAG 735
||.|..|.|||.||...||.|||||.||||...|.||||||||..|.|||
BPUM_2754___y 716 GTATTTTACAACATGTTGAGACGGTTACAGGGCAAATCAACCAACCGCAG 765
BSNT_02152___ 736 CTTCAGCAGCGGGCAGATGTACGTCTTGCTGAAAAAAAGGGCGTGAAAAA 785
||.||..|..|.||..|.|||||.||.||.||.|||||.|||||||||.|
BPUM_2754___y 766 CTGCAAAAAAGAGCCAAAGTACGGCTGGCAGAGAAAAAAGGCGTGAAACA 815
BSNT_02152___ 786 AGAACTGAAAAATATTCAGGCAGTGGGCATCCCGGAAGTGCAGAGCGG-C 834
||||.|.||||..||.||.||..||||.||.||.|||.||||.||||| |
BPUM_2754___y 816 AGAAGTCAAAAGCATCCAAGCGCTGGGTATTCCTGAACTGCAAAGCGGTC 865
BSNT_02152___ 835 TTGCCTGTCTATATTTCGATTCCGGAGGCCGGCATCAAGAAAACCTATTG 884
|| ||..|||||.|....||.||.||...|..|.|.||.||||||||.||
BPUM_2754___y 866 TT-CCGATCTATTTGAAAATCCCTGAAATCAACGTGAAAAAAACCTACTG 914
BSNT_02152___ 885 GGTAGATACGGACCGGCATGAATTTAAAGGAACGAAACATACGATGACGA 934
|.|.|||...|||...||||||||.|..|||..||||||.||.|||||.|
BPUM_2754___y 915 GATCGATCAAGACAAACATGAATTCAGTGGAGTGAAACACACCATGACAA 964
BSNT_02152___ 935 TCGATGTTGTCGAAAAGAATACGATGCCGGAAGG-------AGTTTCCTG 977
|.|||||.||.||.||.|||.|.||.|| .|||| || |.||
BPUM_2754___y 965 TTGATGTCGTTGAGAAAAATTCCATTCC-AAAGGGTGATCAAG---CGTG 1010
BSNT_02152___ 978 A 978
|
BPUM_2754___y 1011 A 1011
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