Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02153 and BPUM_2753

See Amino acid alignment / Visit BSNT_02153 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_02153___xkdR.1.24716.seq
#    -bsequence dna-align/BPUM_2753___xkdR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02153___xkdR-BPUM_2753___xkdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02153___xkdR-BPUM_2753___xkdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02153___xkdR
# 2: BPUM_2753___xkdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 291
# Identity:     175/291 (60.1%)
# Similarity:   175/291 (60.1%)
# Gaps:          48/291 (16.5%)
# Score: 447.5
# 
#
#=======================================

BSNT_02153___      1 ATGAGATTAAGTGAGGCTATAAAACATTTGGCAGTCGGCGCAGTTGACGC     50
                     .||||.||||||||.||.||.||||..||.|||||....||.||.||.||
BPUM_2753___x      1 GTGAGGTTAAGTGAAGCAATTAAACGATTAGCAGTGAATGCTGTAGATGC     50

BSNT_02153___     51 TGAGTCTCCGGTAGAACTGCTCCCGGCT---GAAGTCGTTTCGGTTTCTC     97
                     .|..||.||..|.||.||..|   ||.|   ||||||....|.|||||||
BPUM_2753___x     51 CGCCTCCCCAATTGATCTAGT---GGTTGGAGAAGTCACGGCAGTTTCTC     97

BSNT_02153___     98 CTGTGGAA--ATCAAATTAAAAGAAAACAGCAAACTGATCATACCGGAAG    145
                     ||||  ||  |||...|||||.||.|||...|||||||||||.|||||||
BPUM_2753___x     98 CTGT--AAGCATCCGGTTAAATGACAACCATAAACTGATCATTCCGGAAG    145

BSNT_02153___    146 ACGCCATCATTATC--------CCAAAACG-------AATGCAGTCCGGA    180
                     |       |||| |        |||||.||       ||.|  ||   ||
BPUM_2753___x    146 A-------ATTA-CTGATTTGGCCAAAGCGTCTAAATAAGG--GT---GA    182

BSNT_02153___    181 GGAGACGATGCACTCGAACCGGGG-GATCGCCTCATGACCGCGGCTCTGA    229
                     ||||  ||||.||| |||..|||| ||..||.|.|||.....|||..||.
BPUM_2753___x    183 GGAG--GATGAACT-GAAAAGGGGAGACAGCATTATGGTGTTGGCAATGG    229

BSNT_02153___    230 CTGGCGGGCAATCGTTTTTTATTTTAGATAAGGTATAG---    267
                     |.||.||||||||.||.|..||..|.||.||   ||.|   
BPUM_2753___x    230 CAGGAGGGCAATCCTTCTACATCATCGACAA---ATTGTAA    267


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