Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02156 and BPUM_2750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_02156___xkdU.1.24716.seq
# -bsequence dna-align/BPUM_2750___xkdU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02156___xkdU-BPUM_2750___xkdU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02156___xkdU-BPUM_2750___xkdU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02156___xkdU
# 2: BPUM_2750___xkdU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 981
# Identity: 395/981 (40.3%)
# Similarity: 395/981 (40.3%)
# Gaps: 459/981 (46.8%)
# Score: 960.0
#
#
#=======================================
BSNT_02156___ 1 TTGAGCAAACAAGATGACATGAGAGCTTATCTGCCGCCGTTTCTCACCAG 50
|||||||||||.|||||.||||.|..|||..|||||||.|.|.|.| |||
BPUM_2750___x 1 TTGAGCAAACAGGATGAAATGAAAAATTACTTGCCGCCATATTTTA-CAG 49
BSNT_02156___ 51 -CCTTAAAGAAATGGCTGAGCTGCTGAAAGCGGAAGCGCCTGAGTTTGAT 99
..||.|.|||.|.|.|.|.|||||.|||.|.||||||||.||||||||.
BPUM_2750___x 50 AGATTTATGAAGTCGATCACCTGCTCAAAACAGAAGCGCCAGAGTTTGAG 99
BSNT_02156___ 100 AAACAAAATGACAGCATATTTGATCTGACGGATCAGTTATTCGTACC--- 146
.||....||||...|.|.||.|||.|||||||||||||.||| ||
BPUM_2750___x 100 CAATTGGATGAATCCGTTTTCGATTTGACGGATCAGTTCTTC---CCTTT 146
BSNT_02156___ 147 GACGGCGACATGGGGGCTCAGCCGCTGGGAAAAGATTTTAAATGTGCCTC 196
|||.|||||||||||..|.|...|.|||||||..||..|.||.||||..|
BPUM_2750___x 147 GACAGCGACATGGGGCTTGAATAGATGGGAAAGAATGCTGAAGGTGCAGC 196
BSNT_02156___ 197 GGGAATCAGGCGACACAGATGAGAT---CAG---ACGATTGCGGCTCATT 240
|.|||||||..||..|...|||..| ||| |||.|| .||||.|
BPUM_2750___x 197 GAGAATCAGATGATTCCATTGAACTTCGCAGAGCACGTTT---ACTCAAT 243
BSNT_02156___ 241 TCCAAAATGTCGAACATCCCGCCAATCACATATAGGGCCATT-----GAG 285
|..|||||.|||||.||.||.|||||.||| |.|| |||
BPUM_2750___x 244 ---ATGATGTCAAACATTCCACCGATCACGTAT-----CTTTCTTTAGAG 285
BSNT_02156___ 286 CAGGCGGTAAACCGTTTCTTGAAAAACC--------------CGTCTG-- 319
.|..||||.||.|||||..|||||||.| ||||||
BPUM_2750___x 286 AAATCGGTGAATCGTTTTCTGAAAAATCCAAGTGCCATCATTCGTCTGAC 335
BSNT_02156___ 320 CACAGGTCCGCCTGCTTCCCGGCGAATACCGATTTAACGTCGATATCAAT 369
|||...|| |||.|| ||..||..||| ||| .|||||
BPUM_2750___x 336 CACCAATC-----GCTACC------ATTTCGCCTTA----CGA-GTCAAT 369
BSNT_02156___ 370 GTTGATGACCTCCAGCACATGAATGAGCTGATCGAAGCGATA---GAAAA 416
.|.|||||.||.||..|||..| ||..| ||.|.||..||| | |||
BPUM_2750___x 370 TTAGATGATCTGCAAAACACTA--GATAT-ATTGTAGACATACTTG-AAA 415
BSNT_02156___ 417 CATGAAA-CCCGCTCATTTGGCGTATACGCTCAGAGGC-GGATTGAATGA 464
|.|.||| ||.||||||||||||||||||.||| | |.|||..||.|
BPUM_2750___x 416 CGTTAAAGCCAGCTCATTTGGCGTATACGTTCA----CTGCATTTCATCA 461
BSNT_02156___ 465 GACGC----TACA--AATCAAAGAT--ACAGTCATCCTGA--ATCACCGC 504
.|| | |||| || |||.|| ||| ||| |.||| .||||
BPUM_2750___x 462 TAC-CGATGTACATGAA--AAAAATGAACA-TCA-CGTGAGGCTCAC--- 503
BSNT_02156___ 505 AGATAC--CGAA-CAGCCAGTGAG-------------------------C 526
|| |||| ||| ||||.| |
BPUM_2750___x 504 ----ACTGCGAAGCAG--AGTGGGTTTTTTCGATCATATCCCGATTTTAC 547
BSNT_02156___ 527 TCAAGG------TCGGTTATT--CTGTCAC------TCTTA--------- 553
||||.| ||| |||| .||..|| |||.|
BPUM_2750___x 548 TCAATGGTGAATTCG--TATTAAATGGTACGTTTTATCTGAGCGGGACAA 595
BSNT_02156___ 554 -----ACAACAATGAGG-------TGGTTTT------------AACTTGA 579
|||.|| |||| |.||||| ||.||||
BPUM_2750___x 596 GAGGTACAGCA--GAGGTTCCGACTCGTTTTCGGCATTCGTTGAAGTTGA 643
BSNT_02156___ 579 -------------------------------------------------- 579
BPUM_2750___x 644 GAATGCCGCTTCAGCATAGTACGGAGAACGCATATCGAATGAATTATGTC 693
BSNT_02156___ 579 -------------------------------------------------- 579
BPUM_2750___x 694 ATGACTGGAGCGGTACATGAAACGAAGCAAGGAGCGGCATTCACTGTACG 743
BSNT_02156___ 579 -------------------------------------------------- 579
BPUM_2750___x 744 CACAAAAAATCAGCTCCAGCAACAAACCAAGAAGAAGATGACGTTCCGTC 793
BSNT_02156___ 579 -------------------------------------------------- 579
BPUM_2750___x 794 TGCCAGTACATGTCCAAACTGAGCAAGGTGGAAGCTTACTGATCAAGAAT 843
BSNT_02156___ 579 -------------------------------------------------- 579
BPUM_2750___x 844 CACTACTGGATTCTCGATGGATCTGTTCCGCTGGACGGATCAAAAATGCT 893
BSNT_02156___ 579 ------------------------------- 579
BPUM_2750___x 894 AGCAGCTACTTCTCAAAAAATAGAACTATAA 924
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