Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02156 and BPUM_2750

See Amino acid alignment / Visit BSNT_02156 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_02156___xkdU.1.24716.seq
#    -bsequence dna-align/BPUM_2750___xkdU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02156___xkdU-BPUM_2750___xkdU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02156___xkdU-BPUM_2750___xkdU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02156___xkdU
# 2: BPUM_2750___xkdU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 981
# Identity:     395/981 (40.3%)
# Similarity:   395/981 (40.3%)
# Gaps:         459/981 (46.8%)
# Score: 960.0
# 
#
#=======================================

BSNT_02156___      1 TTGAGCAAACAAGATGACATGAGAGCTTATCTGCCGCCGTTTCTCACCAG     50
                     |||||||||||.|||||.||||.|..|||..|||||||.|.|.|.| |||
BPUM_2750___x      1 TTGAGCAAACAGGATGAAATGAAAAATTACTTGCCGCCATATTTTA-CAG     49

BSNT_02156___     51 -CCTTAAAGAAATGGCTGAGCTGCTGAAAGCGGAAGCGCCTGAGTTTGAT     99
                      ..||.|.|||.|.|.|.|.|||||.|||.|.||||||||.||||||||.
BPUM_2750___x     50 AGATTTATGAAGTCGATCACCTGCTCAAAACAGAAGCGCCAGAGTTTGAG     99

BSNT_02156___    100 AAACAAAATGACAGCATATTTGATCTGACGGATCAGTTATTCGTACC---    146
                     .||....||||...|.|.||.|||.|||||||||||||.|||   ||   
BPUM_2750___x    100 CAATTGGATGAATCCGTTTTCGATTTGACGGATCAGTTCTTC---CCTTT    146

BSNT_02156___    147 GACGGCGACATGGGGGCTCAGCCGCTGGGAAAAGATTTTAAATGTGCCTC    196
                     |||.|||||||||||..|.|...|.|||||||..||..|.||.||||..|
BPUM_2750___x    147 GACAGCGACATGGGGCTTGAATAGATGGGAAAGAATGCTGAAGGTGCAGC    196

BSNT_02156___    197 GGGAATCAGGCGACACAGATGAGAT---CAG---ACGATTGCGGCTCATT    240
                     |.|||||||..||..|...|||..|   |||   |||.||   .||||.|
BPUM_2750___x    197 GAGAATCAGATGATTCCATTGAACTTCGCAGAGCACGTTT---ACTCAAT    243

BSNT_02156___    241 TCCAAAATGTCGAACATCCCGCCAATCACATATAGGGCCATT-----GAG    285
                        |..|||||.|||||.||.||.|||||.|||     |.||     |||
BPUM_2750___x    244 ---ATGATGTCAAACATTCCACCGATCACGTAT-----CTTTCTTTAGAG    285

BSNT_02156___    286 CAGGCGGTAAACCGTTTCTTGAAAAACC--------------CGTCTG--    319
                     .|..||||.||.|||||..|||||||.|              ||||||  
BPUM_2750___x    286 AAATCGGTGAATCGTTTTCTGAAAAATCCAAGTGCCATCATTCGTCTGAC    335

BSNT_02156___    320 CACAGGTCCGCCTGCTTCCCGGCGAATACCGATTTAACGTCGATATCAAT    369
                     |||...||     |||.||      ||..||..|||    ||| .|||||
BPUM_2750___x    336 CACCAATC-----GCTACC------ATTTCGCCTTA----CGA-GTCAAT    369

BSNT_02156___    370 GTTGATGACCTCCAGCACATGAATGAGCTGATCGAAGCGATA---GAAAA    416
                     .|.|||||.||.||..|||..|  ||..| ||.|.||..|||   | |||
BPUM_2750___x    370 TTAGATGATCTGCAAAACACTA--GATAT-ATTGTAGACATACTTG-AAA    415

BSNT_02156___    417 CATGAAA-CCCGCTCATTTGGCGTATACGCTCAGAGGC-GGATTGAATGA    464
                     |.|.||| ||.||||||||||||||||||.|||    | |.|||..||.|
BPUM_2750___x    416 CGTTAAAGCCAGCTCATTTGGCGTATACGTTCA----CTGCATTTCATCA    461

BSNT_02156___    465 GACGC----TACA--AATCAAAGAT--ACAGTCATCCTGA--ATCACCGC    504
                     .|| |    ||||  ||  |||.||  ||| ||| |.|||  .||||   
BPUM_2750___x    462 TAC-CGATGTACATGAA--AAAAATGAACA-TCA-CGTGAGGCTCAC---    503

BSNT_02156___    505 AGATAC--CGAA-CAGCCAGTGAG-------------------------C    526
                         ||  |||| |||  ||||.|                         |
BPUM_2750___x    504 ----ACTGCGAAGCAG--AGTGGGTTTTTTCGATCATATCCCGATTTTAC    547

BSNT_02156___    527 TCAAGG------TCGGTTATT--CTGTCAC------TCTTA---------    553
                     ||||.|      |||  ||||  .||..||      |||.|         
BPUM_2750___x    548 TCAATGGTGAATTCG--TATTAAATGGTACGTTTTATCTGAGCGGGACAA    595

BSNT_02156___    554 -----ACAACAATGAGG-------TGGTTTT------------AACTTGA    579
                          |||.||  ||||       |.|||||            ||.||||
BPUM_2750___x    596 GAGGTACAGCA--GAGGTTCCGACTCGTTTTCGGCATTCGTTGAAGTTGA    643

BSNT_02156___    579 --------------------------------------------------    579
                                                                       
BPUM_2750___x    644 GAATGCCGCTTCAGCATAGTACGGAGAACGCATATCGAATGAATTATGTC    693

BSNT_02156___    579 --------------------------------------------------    579
                                                                       
BPUM_2750___x    694 ATGACTGGAGCGGTACATGAAACGAAGCAAGGAGCGGCATTCACTGTACG    743

BSNT_02156___    579 --------------------------------------------------    579
                                                                       
BPUM_2750___x    744 CACAAAAAATCAGCTCCAGCAACAAACCAAGAAGAAGATGACGTTCCGTC    793

BSNT_02156___    579 --------------------------------------------------    579
                                                                       
BPUM_2750___x    794 TGCCAGTACATGTCCAAACTGAGCAAGGTGGAAGCTTACTGATCAAGAAT    843

BSNT_02156___    579 --------------------------------------------------    579
                                                                       
BPUM_2750___x    844 CACTACTGGATTCTCGATGGATCTGTTCCGCTGGACGGATCAAAAATGCT    893

BSNT_02156___    579 -------------------------------    579
                                                    
BPUM_2750___x    894 AGCAGCTACTTCTCAAAAAATAGAACTATAA    924


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