Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02160 and BPUM_2748
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_02160___xkdV.1.24716.seq
# -bsequence dna-align/BPUM_2748.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02160___xkdV-BPUM_2748.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02160___xkdV-BPUM_2748.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02160___xkdV
# 2: BPUM_2748
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2116
# Identity: 629/2116 (29.7%)
# Similarity: 629/2116 (29.7%)
# Gaps: 1289/2116 (60.9%)
# Score: 1858.5
#
#
#=======================================
BSNT_02160___ 1 ATGGCATACGAAGAAAAAACAGACTGGCTTCCGGACGACCCAATCAACGA 50
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 51 AGATGACGTCAACCGCTGGGAAAAAGGCATAAAAGACGCCCACACCGACC 100
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 101 TGGCCGCCCACAAAAACGACATGAACAACCCCCACAACACAACAAAGGCG 150
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 151 CAAATCGGGCTGGGGAACGTGGATAATGTGCAGCAGGCGGCGAAGAAGGA 200
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 201 TTTTGACAAGCATGAGCAAGATCAGGTGCGGCATATTACATCGACAGAGC 250
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 251 GTGAAAACTGGAACGCAAAAGAAACTCCAGGTGAAGCTCAAAATAAGGCA 300
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 301 GATCAAGCTGAAGCAAACGCCAAAGCCTATACAGATAGTTTTGCTGCACG 350
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 351 AAGAGATAATCCTAACCAAGTAACAAAAGCACAAGTTGGACTTGGGAATG 400
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 401 TCGAAAATGTGAAACAAGCCTCACAAGCAGATTTTGATGCTCATTTAAGC 450
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 451 AATACTAAAGTTCATGTATCTGAAGGGGAAAGAAATAAATGGAATGCTGC 500
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 501 CCAACTAATTAAACTTACTGGAGACGATGGTAAAAGAATACAACTCCAAG 550
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 551 ACGGTACAGATATTCTTACATTATCTTCTGGGTTTTATTGTGCAGTTGGT 600
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 601 CAGTCAGTTGTAAACAACCCGGTGGAAGGCGATGCAACTTGGTATAACTA 650
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 651 CGATATTGTAGAAGGCGGTTCAGGAAGGAAAACAATAGTAGCTTACCAAA 700
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 701 GTTGGGGAAGCATGATGTGGATCGGAATGGTTCACACTGATGGAGAATTT 750
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 751 AGAGGATGGAAACAAATTGCAACAACAGATTTTATAGATAGAGTTCAATC 800
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 801 AGAATTAGATATTCATAAAAATGATAAAACTAATCCACATTCAGTTACTA 850
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 851 AACAACAAGTGGGTCTCGGAAATGTTGAGAATGTTAAGCAGGAGACACCT 900
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 901 GATGGTGCGCAAAAAAAAGCTGATACTGCTTTGAACCAATCAAAAGATTA 950
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 951 TACTAACAGCACGGCCTTTATTACTAGACCATTAAATTCAATAACCGATG 1000
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 1001 CAAATGATTTAAATCTTCCGCCTGGCACTTATCGTTTAGACACTAATTAC 1050
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 1051 ATGAATGCAAATCCAGAATTGCAAAATCAATTTCCGCTAAATGATAACAG 1100
BPUM_2748 0 -------------------------------------------------- 0
BSNT_02160___ 1101 AACAGGTTTATTAATTATCTACCCTTCTGCAAATAAATGGGCTACACGTC 1150
|||| ||.||
BPUM_2748 1 ------------------------------------ATGG-----ACATC 9
BSNT_02160___ 1151 AAGATTGGTTTAGCATCTCTAC-----GAAAACACTTTATACAAGGGTAG 1195
|| |.||.||.||| ||||.|.|| .|||| ||
BPUM_2748 10 AA---------ATCACCTTTACCGTTTGAAACCTCT---GACAA----AG 43
BSNT_02160___ 1196 CTGTTAATGGT-ACTGAGTATACCGATTGGTATATATTGGAAACA-TCG- 1242
| |.|||.| |||.|.|..|||||.||| |.||.||| |||
BPUM_2748 44 C---TCATGCTAACTTATTTAACCGAATGG-------TCGACACACTCGT 83
BSNT_02160___ 1243 ---GAAGGTTCACAA-------AGTAA------AGCA--GATAAAGCTTT 1274
||| |.|||| ||||| |||| |||.|
BPUM_2748 84 TGAGAA---TGACAATGCGCTCAGTAAACGAATAGCAGGGATCA------ 124
BSNT_02160___ 1275 AGCTGATGCTAAAAACTATGTTGACTCTAACTATACGAATAATAAATTAA 1324
|..||| |||.|| ||||.|.| ||||
BPUM_2748 125 --CGAATG---AAAGCT-TGTTCATT--------------------TTAA 148
BSNT_02160___ 1325 CAGTTCTTACAG-GATCCAATGCAATTCAAGACGCTAGAACA---AGCGG 1370
||| | |||| |.||.||||||||.|| |.|| |||||
BPUM_2748 149 CAG--------GCGATC--AAGCCATTCAAGATGC---ATCAGTCAGCGG 185
BSNT_02160___ 1371 CAATGAG---TATCCAGCTGGGCTGACTTTTATGGATATAGG---AGCAA 1414
|||| ||||||..||||.|.||.|||||||||||.|| |||.|
BPUM_2748 186 ---TGAGCAATATCCAAATGGGATTACATTTATGGATATTGGCCAAGCCA 232
BSNT_02160___ 1415 ATAATACAACAGGTTACCCGCTTACCTATGGCATAGTAAAAAATGAAAAG 1464
||.|| ||.||.||.|||...|..||||||.|.||.||.|||||.|||
BPUM_2748 233 ATGAT---ACGGGATATCCGACGAGATATGGCTTTGTGAAGAATGAGAAG 279
BSNT_02160___ 1465 TAT-AGTAATTATCGATTTGCTCAATATTTTTATGGGACAGGAAATGAGT 1513
|| |||||||.||||||||..|||||.|.||||||.||.||.||.||..
BPUM_2748 280 -ATCAGTAATTTTCGATTTGTACAATACTATTATGGCACTGGGAACGAAG 328
BSNT_02160___ 1514 CAAACTCTTATTTTACTAGTACAGGTTCTTGGATTCGCCATTGGTGGTCC 1563
||..|...||||||..|||.||||||.|.|||...||.||.||||||.|.
BPUM_2748 329 CAGGCAGCTATTTTGATAGCACAGGTACGTGGTGCCGTCACTGGTGGACT 378
BSNT_02160___ 1564 GATTCCGGTTGGACAGCTTGGCATAAAATTTCTGGATTTGCTCATGCAAA 1613
|.|||.||||||||.|..|||||||||.|.|||||.|||..|||..||||
BPUM_2748 379 GGTTCGGGTTGGACCGACTGGCATAAACTCTCTGGTTTTCTTCACACAAA 428
BSNT_02160___ 1614 TATCGGAACTACAGGAAAGCAGCAATTG---ATTAAAGGAGAACTTCAAA 1660
.||.||.||.||.||.|||||| ||| |.|||.|..||||..||||
BPUM_2748 429 CATTGGTACAACTGGGAAGCAG---TTGCTTAATAATGCCGAACGACAAA 475
BSNT_02160___ 1661 AAGTAAAATATAATAGAAAAATAAAAGATAGCCATAATACTTTTGATACT 1710
||.|...||.||||.|||||||.||||||||.||.||||.|||||||| |
BPUM_2748 476 AAATTCTATTTAATCGAAAAATCAAAGATAGTCACAATAATTTTGATA-T 524
BSNT_02160___ 1711 AAAAAC-AATAGATTTA-TTGTTCCGAATGATGGAATGTTTTTGGTGAAC 1758
|||||| |.|.|.|||| ||||.|.||| .|.|||||||..||.||.|||
BPUM_2748 525 AAAAACTAGTCGTTTTATTTGTCCAGAA-AACGGAATGTACTTAGTAAAC 573
BSNT_02160___ 1759 GCGGGATTGTATATAGAAAATTATCAAAGGTATGTAAACTATGAATTGGA 1808
||.||..|||||||.||.|....|||||.|||||.|||.|.|||..||..
BPUM_2748 574 GCAGGTGTGTATATTGAGACGGTTCAAATGTATGCAAATTTTGAGCTGTC 623
BSNT_02160___ 1809 CATTTATTTAAATGGTGTTAGA----TATAAAAATATTGCACACTATAGG 1854
.||.|.||||||||| |.| ||||||||.|||.|.||.|||| |
BPUM_2748 624 TATCTTTTTAAATGG----AAAAAATTATAAAAACATTTCGCATTATA-G 668
BSNT_02160___ 1855 GCAAATCCAGG--AGACCAGTCGGATACTACCGAAATAAATGTTGGACTT 1902
.||..|||..| |.||| .||.||.||..|..||.|.|||.|.|||.|.
BPUM_2748 669 ACATCTCCCTGCCACACC-TTCTGAAACGGCAAAACTTAATATAGGATTA 717
BSNT_02160___ 1903 TATGGGGCTGCAACAGTTCCAGCAAATCAAGGGGATTATATTGAAATTTA 1952
|||||||||||.|..||.|||||.|||.||||.|||.|.|||||||||||
BPUM_2748 718 TATGGGGCTGCGAATGTGCCAGCGAATAAAGGCGATAACATTGAAATTTA 767
BSNT_02160___ 1953 CTTATATGTCGGATATAACGGTGGTACTAC---TCGGTATACAACAGA-A 1998
|.|.|||.|.|||||| |..||.|.|.| |||.||||.|.|||| |
BPUM_2748 768 CATGTATATAGGATAT---GCGGGAAATTCCGATCGTTATATATCAGATA 814
BSNT_02160___ 1999 AGCTCGGGGTGGTATAACTACTTTGATATTACAGAAATCGGCGGCAGAAA 2048
|.| |.||.|||||.|||||.||.||.|||||||||||.|||||||||||
BPUM_2748 815 ATC-CAGGCTGGTACAACTATTTCGACATTACAGAAATAGGCGGCAGAAA 863
BSNT_02160___ 2049 TTACCCGAGAACTTAG 2064
||.|||||||...|||
BPUM_2748 864 TTTCCCGAGAGTATAG 879
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