Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04561 and BPUM_2733
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:05
# Commandline: needle
# -asequence dna-align/BSNT_04561___yuaE.1.24716.seq
# -bsequence dna-align/BPUM_2733___yuaE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04561___yuaE-BPUM_2733___yuaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04561___yuaE-BPUM_2733___yuaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04561___yuaE
# 2: BPUM_2733___yuaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity: 327/553 (59.1%)
# Similarity: 327/553 (59.1%)
# Gaps: 104/553 (18.8%)
# Score: 883.5
#
#
#=======================================
BSNT_04561___ 1 ------------------------ATG---ATGAGTATCTTTAATGAAGC 23
||| ||||||.|.||..||||.||
BPUM_2733___y 1 ATGTTAAAATTTGATCTTGAGGTGATGAAAATGAGTTTATTACATGATGC 50
BSNT_04561___ 24 CAGATTAGAAACGTGGAACGAATTGAAAGGACTTTCTG-ACGAAAAGC-- 70
.|||..||||..||||.|.||.|||.|||| |.|| |||||.|.|
BPUM_2733___y 51 AAGACAAGAATTGTGGCAAGAGTTGCAAGG----TTTGAACGAAGAACAA 96
BSNT_04561___ 71 -TGAATCAAAAGCCTTCTGCTGAAGAATGGAGCATACGGGAAGTTCTTGA 119
||||||||||....||||.|||....|||||.||.|..||.||....||
BPUM_2733___y 97 TTGAATCAAAAATTATCTGATGATACTTGGAGTATTCAAGAGGTGGCAGA 146
BSNT_04561___ 120 CCATTTGAAAAAAATCGATATGACC-----GCA-CAAAAAA------TGT 157
.|||||.|||||.|| .|||| ||| |||||.| ||.
BPUM_2733___y 147 TCATTTAAAAAAGAT-----GGACCTCGTGGCAGCAAAACATCTAGCTGC 191
BSNT_04561___ 158 TGAAGGAACGTGTAAAGGACGCTCCGATTAAAGAAATTGAAGAAAAATCG 207
|||||||| ||| |.||.||||||||||||..|||...|||..||
BPUM_2733___y 192 TGAAGGAA-----AAA--AAGCACCGATTAAAGAATATGAGCCAAAGCCG 234
BSNT_04561___ 208 CTTGAGGTCGCACAGGACAGAAATAATAAACGGAAAGCCCCGAGTCATCT 257
.|.||..|.|||.||||..|...||..|||..||..||.||.|||..|.|
BPUM_2733___y 235 GTGGAAATGGCAGAGGATCGTTCTAGAAAAGCGACTGCGCCTAGTATTGT 284
BSNT_04561___ 258 TGAGCCT--GCGCATG-ATTTTA---TTTCAGGCAGCCAAATGAAACGTG 301
|||.||| |||||.| ||.|.| .|.|| ||.|.|||.|| ||
BPUM_2733___y 285 TGAACCTGAGCGCAAGCATGTGACACCTACA--CACCTAAAAGA----TG 328
BSNT_04561___ 302 AGCTTGATGTGGTAAGAGAGCAGCTGACTGCTGCGATTGCCTCTCTGAA- 350
||||||||...|.|.|.||||||||.|.| |.|.| |||.|.||
BPUM_2733___y 329 AGCTTGATACAGCACGTGAGCAGCTCAAT----CAAAT---TCTATCAAC 371
BSNT_04561___ 351 ------AGAAGAAGATTTTGAAAGAGTG--CTTCCGCATCCTGTGTTTCA 392
.||.||.||||| .|||.||| .||.|.||.|||||||||.|
BPUM_2733___y 372 GTTTACTGAGGATGATTT--CAAGCGTGTCATTGCACACCCTGTGTTTGA 419
BSNT_04561___ 393 AGAGCTGACTGTCAGACAGTGGATC--GATTTTATCGGC-CATCATGAAA 439
|||..|..||.|.|..||.| ||| |||||||||||| || |||||||
BPUM_2733___y 420 AGAATTATCTCTTAAGCAAT--ATCTTGATTTTATCGGCGCA-CATGAAA 466
BSNT_04561___ 440 AACGGCACCTCAGCCAAATGAAAGAAATTAAAGAAAAGATAGAAAGGGCC 489
||||.||..||...|||||.|||||||||||||||.||.||.||
BPUM_2733___y 467 AACGCCATATCCATCAAATCAAAGAAATTAAAGAACAGCTATAA------ 510
BSNT_04561___ 490 TGA 492
BPUM_2733___y 510 --- 510
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