Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04558 and BPUM_2727
See
Amino acid alignment /
Visit
BSNT_04558 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_04558___yuaI.1.24716.seq
# -bsequence dna-align/BPUM_2727.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04558___yuaI-BPUM_2727.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04558___yuaI-BPUM_2727.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04558___yuaI
# 2: BPUM_2727
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 646
# Identity: 316/646 (48.9%)
# Similarity: 316/646 (48.9%)
# Gaps: 215/646 (33.3%)
# Score: 656.0
#
#
#=======================================
BSNT_04558___ 1 ---ATGGTAA------CTGTACGTGAAGCGAAGTTAGAGGATA----TAA 37
|.|||.| |||||| .|.|.|||| |||
BPUM_2727 1 ATGAAGGTGAGACATGCTGTAC------------AACAAGATATTCCTAA 38
BSNT_04558___ 38 AGGACATTGCAAAAGTGCATGTAGACAGCTGGAGGACAACATACCACGAA 87
| ||.||..||.|.|||||..|.||||||..|||.||.||.||.|..
BPUM_2727 39 A----ATCGCCGAAATACATGTGAAGAGCTGGCAGACGACTTATCAAGGT 84
BSNT_04558___ 88 ATT----ATCCCGATT-----GATTATTTAAACAGCCTGAACTATAAG-- 126
||| |||..|||| |||..||||| ||.||.|||
BPUM_2727 85 ATTATCAATCAGGATTATTTGGATGGTTTAA--------AAATAGAAGAG 126
BSNT_04558___ 127 -GAATTTGAAGACAAATGGA----AAAGTCGCTCGTTAAAAGGA-GTATT 170
|| |||||.|..|||| ||.|||.| ||.||.||| | ||
BPUM_2727 127 CGA----GAAGAGAGCTGGAGAAGAATGTCAC---TTGAAGGGACG--TT 167
BSNT_04558___ 171 TGTTGCTCAGGA---CGAAATGGATTCAGTATTCGGCTTTGCTTCATTTG 217
|||.||..|.|| |||...| |||||.||.||||||||.||||
BPUM_2727 168 TGTCGCAGAAGATGCCGAGGGG------GTATTTGGTTTTGCTTCTTTTG 211
BSNT_04558___ 218 GACCTATTCGCTCTGAACAA------GA-AGG--------CTATGACGGC 252
|| .||||| || ||| .|||||.||.
BPUM_2727 212 GA------------AAACAACGTGATGAGAGGTATCCAACATATGATGGA 249
BSNT_04558___ 253 GAGTTATACG----CTATTTATCTTCTGGAAGAGCGCCAGCGGCAAGGTG 298
||..|.|||| |||||||| ||.||.||...|||.|...|||.|
BPUM_2727 250 GAACTTTACGCGATCTATTTAT----TGCAAAAGAAACAGAGATCAGGAG 295
BSNT_04558___ 299 CAGGCAGGGCGCTCTTAGCAAAAGGAGCGGAGTATTTGCTTCAACATGGC 348
||||.|..||..|..|.|||.||||||.|...|||||..|..|..|.||.
BPUM_2727 296 CAGGAATTGCTTTAATTGCAGAAGGAGTGCGTTATTTAATAGAGAAAGGG 345
BSNT_04558___ 349 TTTTCAAGTATGTTTGTTTGGGTTATTGAGCAGAATCCCTCG----ATTA 394
|.|..||.|||..|..|.|||||..||||.||.|| |||| |..|
BPUM_2727 346 TATCAAAATATACTACTGTGGGTATTTGAACAAAA---CTCGGCAAAGCA 392
BSNT_04558___ 395 TATTTTATCAGGCCTATTCACCTGAAAGAGTAGCGGAGGACAAC-----T 439
| |||||||| ||||..| |||| |
BPUM_2727 393 T-TTTTATCA--------------AAAGCTT---------CAACCTCATT 418
BSNT_04558___ 440 TTGAAATTGCCGG--AGT-----------------AAG---GCTGAAAGA 467
|||...||.||.| ||| ||| |.|||||.|
BPUM_2727 419 TTGTCGTTACCAGCCAGTTCGAGCTGGCTGGCGAGAAGCATGATGAAATA 468
BSNT_04558___ 468 -AGTA--GGT--------CTTG-----GCTGGCCGGATCT---------- 491
.||| ||| |||| ..||.|| ||||
BPUM_2727 469 GGGTACGGGTGGGAGCTACTTGTATTAAATGACC--ATCTACACCGAATT 516
BSNT_04558___ 492 -----TTCAGCTT----TAAAAACACTTCTTAACAGATAA------ 522
.||||||| |||.|| |.|.|||.||
BPUM_2727 517 AAATCGTCAGCTTCCAATAATAA-------TGAGAGAAAAATGTGA 555
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.