Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05887 and BPUM_2720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_05887___menA.1.24716.seq
# -bsequence dna-align/BPUM_2720___menA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05887___menA-BPUM_2720___menA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05887___menA-BPUM_2720___menA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05887___menA
# 2: BPUM_2720___menA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1056
# Identity: 585/1056 (55.4%)
# Similarity: 585/1056 (55.4%)
# Gaps: 288/1056 (27.3%)
# Score: 1491.5
#
#
#=======================================
BSNT_05887___ 0 -------------------------------------------------- 0
BPUM_2720___m 1 ATGCAGCATCAATCGATATCAGATCAGCTTTCACCGATAAAGCCTGATAA 50
BSNT_05887___ 1 -ATGGGGCAGATCCTT--TGGCAGTTAACCCGTCCTCATACGTTAACCGC 47
|...|||.||| || |||.|.|||...||.||.|||||.|||||.||
BPUM_2720___m 51 GAACTGGCGGAT--TTGGTGGAATTTACTACGACCGCATACATTAACAGC 98
BSNT_05887___ 48 ATCGTTTGTGCCTGTGCTGC--TCGGAACCGTTTTGGCGATGTTTTATGT 95
|.|.|||.|.||.|| |.| |.|||||.|||.|.|| ..||..|.||
BPUM_2720___m 99 AGCATTTATTCCCGT--TACTTTAGGAACTGTTCTAGC--ACTTCCAAGT 144
BSNT_05887___ 96 G--------AAGGTTGATCTGCTGCTGTTTTTGGCTATGCTGTTTTCTTG 137
| .|.|||| .|||.|||||.||||||||||||.|.|
BPUM_2720___m 145 GGTCAAATACATGTTG------GGCTATTTTTAGCTATGCTGTTTGCAT- 187
BSNT_05887___ 138 CCTATG--GATCCAGATCGCGACGAACTTATTTAATGAATATTATGATTT 185
|.||| .|||||.|||||.||.|||.|.|||||||||||.|.||||||
BPUM_2720___m 188 -CAATGTTTATCCAAATCGCAACAAACATGTTTAATGAATACTTTGATTT 236
BSNT_05887___ 186 TAAACGCGGATTAGATACAGC-AG-AATCAGTCGGAATCGGAGGGGCAAT 233
|...||||||||.| |||.| || ||||.|||||.|||||.||.||.||
BPUM_2720___m 237 TGTTCGCGGATTGG--ACAACGAGAAATCTGTCGGTATCGGCGGCGCCAT 284
BSNT_05887___ 234 TGTACGCCACGGAATG-----AAGCCTAAAA-------------CGATTT 265
||| || |.|||| |||||.|||| ||.||.
BPUM_2720___m 285 TGT----CA-GAAATGGTGTAAAGCCAAAAACAGTTCTCGGCCTCGCTTA 329
BSNT_05887___ 266 TGCA--ATTAGCTCTGGCATCA-TAC-GGGATTGCCAT---TTTGCTCGG 308
|||| |||.||.||..|.|.| ||| .|||.| || |||||..|.
BPUM_2720___m 330 TGCACTATTTGCGCTTTCCTTACTACTAGGAGT---ATACATTTGCATGA 376
BSNT_05887___ 309 TGTCTATATTTGTGCGAGCAGCAGCTGGTGGCTTGCGCTGATCGGCC--- 355
||||| |||||||||.||||.|||||.||.|
BPUM_2720___m 377 TGTCT-----------------AGCTGGTGGATTGCACTGATAGGACTCA 409
BSNT_05887___ 356 -TTGTCGGCATGGCGATC-GGCTACCTGTATACAGGCGGGCCGCTGCCGA 403
|||| ||||| |.| |||||..|.|||||||||||.||..|.||.|
BPUM_2720___m 410 TTTGT----ATGGC-AGCAGGCTATTTCTATACAGGCGGTCCTGTTCCTA 454
BSNT_05887___ 404 TTGCGTACACGCCGTTCGGTGAATTATTCTCAG--GCATTTGCATGGG-T 450
||||.||.||.|||||.||.|||.|..|.|||| ||.||| ||||| .
BPUM_2720___m 455 TTGCATATACACCGTTTGGAGAACTTGTGTCAGGTGCCTTT--ATGGGAC 502
BSNT_05887___ 451 TCGGTGTTTGTGCTGATTTC-GTTT-TTCATTCAGACAGATA---TGA-- 493
|.|| ..||.|.|||| || |||| |..|||||.||||..| |||
BPUM_2720___m 503 TAGG-AATTATTCTGA--TCAGTTTCTATATTCAAACAGGCACACTGACG 549
BSNT_05887___ 494 TCAACACGCAAAGCATTT------TGATTTCCATCCCGATTGCGATTCTT 537
||| |||||..|| |.|||.||| |||.|.|||.|.
BPUM_2720___m 550 TCA------AAAGCTGTTCTCGTCTCATTACCA-----ATTTCAATTTTA 588
BSNT_05887___ 538 GTCGGCGCGA--TTAATTTGTCAAACAACATTCGCGATATTGAAGAGGAC 585
||.||.||.| ||| .|.||.|||||.||.||||||.|.||.|..||.
BPUM_2720___m 589 GTTGGTGCCATCTTA--CTATCGAACAATATCCGCGATTTAGACGGTGAT 636
BSNT_05887___ 586 AAAAAAGGCGGCCGCAAAACATTGGCGAT-TTTGATGG---------GGC 625
|||.||...||.||.||||||.|.||.|| .|||.||| |||
BPUM_2720___m 637 AAAGAAAATGGACGAAAAACACTTGCTATCCTTGCTGGACGAAAAGCGGC 686
BSNT_05887___ 626 ATAAGGGAGC-TGTTACT----CTGTTAGCTGCGTCGTTTGCCGTCGCTT 670
||.||.| |.||||| .|||| |||| .||.|.|
BPUM_2720___m 687 ---AGTGAACATTTTACTTTCCATGTT----------TTTG--ATCTCAT 721
BSNT_05887___ 671 ATAT-CTGGGTTGTCGGCTTGGTTA-----TTACCG---GTGCCGCAAGC 711
||.| ||...|| |||.||| |.||.| .||.|| ||
BPUM_2720___m 722 ATGTACTTATTT------TTGTTTATATCTTCACAGATATTGTCG---GC 762
BSNT_05887___ 712 CCATGGCTGTTTGTCGTCTTTTTG--------AGCGTGCC-TAAGCCGGT 752
| ||||..|||||.||| ||.||.|| .||||...|
BPUM_2720___m 763 C--------TTTGGAGTCTTCTTGTTTTACTCAGTGTCCCAAAAGCATAT 804
BSNT_05887___ 753 TCAG--------GCAGTGAAGGGCTTCGTCCAAAAAGAAATGCCGA-TGA 793
.||| |.|.|.||| ||||||||||..||.| |||
BPUM_2720___m 805 ACAGCTATCAAAGAATTTAAG---------CAAAAAGAAAAACCAATTGA 845
BSNT_05887___ 794 AT--ATGATTGTCGCAATGAAATCAACAGCCCAAACAAATACATTTTTCG 841
|| ||||.| ||.||||||||.|||||.|||||.|||||||||||||
BPUM_2720___m 846 ATTAATGAAT---GCCATGAAATCGACAGCTCAAACCAATACATTTTTCG 892
BSNT_05887___ 842 GATTCCTGCTTTCGATCGGATTATTGATCAGCTATTTCCGATAA------ 885
|.||.|||||..|.|||| ..|||||| ||.|.|||.
BPUM_2720___m 893 GTTTTCTGCTAACAATCG---CTTTGATC------TTACAATACTATATT 933
BSNT_05887___ 885 ------ 885
BPUM_2720___m 934 GCTTAA 939
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