Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04486 and BPUM_2719
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_04486___menF.1.24716.seq
# -bsequence dna-align/BPUM_2719___menF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04486___menF-BPUM_2719___menF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04486___menF-BPUM_2719___menF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04486___menF
# 2: BPUM_2719___menF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1616
# Identity: 939/1616 (58.1%)
# Similarity: 939/1616 (58.1%)
# Gaps: 352/1616 (21.8%)
# Score: 2531.0
#
#
#=======================================
BSNT_04486___ 1 GTGTATGGTATTAAAAGCATTTTAAGGATTATGGAGGAATGTCTCATGGT 50
|||||
BPUM_2719___m 1 ---------------------------------------------ATGGT 5
BSNT_04486___ 51 GACAACGGTGCAGCGTACGTTCCGAAAGGAAGTTCTACATG---CATTAC 97
||||||.|||||..||||.|||||..||||||..|| || |||||.
BPUM_2719___m 6 GACAACAGTGCAAAGTACTTTCCGGCAGGAAGCGCT---TGCGACATTAG 52
BSNT_04486___ 98 ATAAAGCCAAAGAAGTCAACCATGCTGTCTTAATAAGCTATTCGAGACAA 147
|..||||.||..|.||||||||||||||.||.||||||||.||.|||..|
BPUM_2719___m 53 AAGAAGCGAATAACGTCAACCATGCTGTTTTGATAAGCTACTCCAGAAGA 102
BSNT_04486___ 148 ATCGAGTCTCTTGACCCTCTATCATTTTTCAATTACGGAGCAAAAA---- 193
.|.||...|||.||.|||||..|.||||||.|...|||.| ||
BPUM_2719___m 103 GTTGACGATCTGGATCCTCTTGCCTTTTTCCAAAGCGGCG----AAGCGG 148
BSNT_04486___ 194 AATATACAGGCAATCGATTTTTTTGGTCAGATCCTGAAAGTGAATTGACA 243
|.|.|..||||.|.||.|||||||||||.|||||.|||||..||.||| .
BPUM_2719___m 149 ATTTTTTAGGCGAGCGCTTTTTTTGGTCTGATCCAGAAAGCCAAATGA-T 197
BSNT_04486___ 244 ATAGTC-GGTCTTGGCAAAGAAGCGGTT-TTCCAGACAAATCAAAAAAAC 291
||..|| ||.|||||||.||..||.||| || |||.|
BPUM_2719___m 198 ATTTTCTGGACTTGGCAGAGCGGCCGTTATT--------------AAATC 233
BSNT_04486___ 292 AGC-GAGC--GGTATCGTGAGG-----TTT----------TTGAACAATG 323
|.| |||| |||| ||| ||| .|.||.||||
BPUM_2719___m 234 ATCTGAGCAAGGTA-----AGGAACGATTTGATACAGTCCATCAAGAATG 278
BSNT_04486___ 324 GGAGC-GCTTTAAAAAGACGGC----TTTTCATATTTATGA--AGAAGAA 366
|||.| ||| .||| |.|| .||.|||.||.|||| |||||.|
BPUM_2719___m 279 GGAACAGCT----GAAG-CAGCACATGTTCCATTTTCATGATGAGAAGGA 323
BSNT_04486___ 367 ---AAGCTGCAGCATTCTGCAGTGGGACCTGTGTTATTCGGAGGATTTTC 413
||| |||..|.||.||.||.||..|.|||||.||.|||||.||
BPUM_2719___m 324 GTTAAG-----GCAAGCGGCTGTTGGTCCGCTTTTATTTGGTGGATTCTC 368
BSNT_04486___ 414 TTTTGACCCTTGCGAAGAAAGAGG---TTCACAATGGGACCATTT----- 455
.|||||.||.|..|||||.| ||| .|||| |||||...|||
BPUM_2719___m 369 ATTTGATCCGTATGAAGAGA-AGGCGCGTCAC--TGGGAAGCTTTTGGTG 415
BSNT_04486___ 456 ---CTCGGAAGGGGATTTCTTTGTGCCTGCGCTTATGCTGACGATGACTG 502
||| ||||.||||||||..||.|.|||||.|| ||.||
BPUM_2719___m 416 AGGCTC--------ATTTTTTTGTGCCATCGATGATGCTCAC--TGTCT- 454
BSNT_04486___ 503 C---TGAAGGCCCG-TTCTTAACAGTTAACAGATGGGTAAGC----GGAG 544
| .||||||.|| ||||| ||..|.||...|||| |||| |||.
BPUM_2719___m 455 CAAAAGAAGGCACGTTTCTT-ACGATCAATGAATGG--AAGCAGGTGGAT 501
BSNT_04486___ 545 GAGAAGACGCAGAAGCT-------GTTTTAGAAGGCTTAAAAGCTTTTGC 587
|.|||....||..|||| |..|||||| ..||||||.|
BPUM_2719___m 502 GGGAATGTTCATCAGCTCATTCAAGAATTAGAA---CAAAAAGCCT---- 544
BSNT_04486___ 588 GGCGGAATTTATGGTTCCTGATTTCAAGCAAGA---------AGAT---- 624
||.|.||||| ||.| ||||
BPUM_2719___m 545 -----------------CTCAATTCAA--AACATTACCGCTCAGATATGA 575
BSNT_04486___ 625 ----CAGGCTGTGATTG--CAGCAGCCGAAGAGCTGGATAAGGATGATTG 668
||.||||...||| ||...| |||||.||.|||..|.||||.||
BPUM_2719___m 576 TGGACAAGCTGAACTTGTTCATATG--GAAGAACTAGATGTGAATGAATG 623
BSNT_04486___ 669 GCTGAAAGCAATCGAAACGGCCACAAGCCAAATTAAAGAGAAACAATATG 718
|.||||.||.|||.||...||.|||..|||.|||...|..||..||||||
BPUM_2719___m 624 GATGAAGGCGATCCAAGAAGCGACAGACCACATTCGTGCTAACGAATATG 673
BSNT_04486___ 719 ATAAGGTTGTTCTTGCCCGAGAGCTGCTGC-TCACGTTTGACGGTCCAAT 767
|.|||||||||||.||..||||..|..||| |||| |.|.| ||.
BPUM_2719___m 674 AAAAGGTTGTTCTAGCAAGAGAAGTCTTGCTTCAC-TATAA------AAA 716
BSNT_04486___ 768 CCAAATTGAAC-CGGTGCTTAAAACGCTTCTGGACGATCAGCA------- 809
.|||||||||| ||.|.| ||..|| |||||||
BPUM_2719___m 717 TCAAATTGAACTCGCTCC-----ACTGTT-------ATCAGCATTATTAA 754
BSNT_04486___ 810 ----------GACAAGCTATGTTTTTGCAATTGAACA----AGA-AGGCA 844
.|||||.|||||.|||||..||||||| ||| |.|||
BPUM_2719___m 755 AGCATCAAACAACAAGTTATGTATTTGCGGTTGAACAGGGGAGACAAGCA 804
BSNT_04486___ 845 AAACCTTTGTCGGCGCGTCTCCGGAAAG---ACTGATCAAAAGAGACGGC 891
||||||||.||..|.||||||.| |.|||..||||| ||||
BPUM_2719___m 805 -----TTTGTCGGAGCTACACCGGAACGTTTAGTGAAAAAAAG---CGGC 846
BSNT_04486___ 892 GGCACTGTCATGTCTTCCTGTCTGGCAGGCTCCATTAAACGAGG--CGTG 939
||....|||.|.||.||.|||.|.|||||.||.||| | ||||
BPUM_2719___m 847 GGAGAGGTCTTTTCATCTTGTTTAGCAGGTTCAATT-------GTTCGTG 889
BSNT_04486___ 940 -----AATGAAGAAGACGACCGCCGGA------TAGGCCTTGAATTATTA 978
||||||||.||.|| .| |||||...|||.|.||.
BPUM_2719___m 890 GAAAAAATGAAGAGGAAGA------TAAAGCATTAGGCGAGGAACTGTTG 933
BSNT_04486___ 979 AACGATGAGAAAAACCTGCTTGAGCATGATATTGTGGTAGGTATGATTCA 1028
.|.||||||||.||..||.||||.|||.|.|||||.||...|||||||.|
BPUM_2719___m 934 CATGATGAGAAGAATTTGATTGAACATCAAATTGTTGTCAATATGATTGA 983
BSNT_04486___ 1029 TAATGCTTTTGTATCAAGC----TG--TTCAGAG-GTTGAAAAGCCTGAT 1071
..|.||.|||| |||| || ||| | ||..|.||.||..||
BPUM_2719___m 984 ACAAGCATTTG----AAGCCAATTGCCTTC---GCGTGCATAAACCAAAT 1026
BSNT_04486___ 1072 GGACCT-GTTTTGTACAAAACAAAAAGCGTTCAGCACCTGTTTACGCCGA 1120
..|||| ||.|| ||.||||||||||...||||.||..|||||||.||||
BPUM_2719___m 1027 CAACCTAGTCTT-TATAAAACAAAAAATATTCAACATTTGTTTACACCGA 1075
BSNT_04486___ 1121 TTGTCGG-----------ACAGCTGCGCGAGTCTGCTTCAATTTTTGACT 1159
||||.|| ||||.|| |||..|.|||...|
BPUM_2719___m 1076 TTGTGGGAGAAATTAAAAACAGTTG-----------TTCCCTCTTTTCGT 1114
BSNT_04486___ 1160 TAATTGAGAAGCTGCATCCCACTCCGGCGCTCGGGGGAGCACCTCAGGAA 1209
|||||||..||||.||.||.||.||.||..|.||.|||...||..|||||
BPUM_2719___m 1115 TAATTGAACAGCTCCACCCGACGCCAGCATTAGGCGGATATCCGAAGGAA 1164
BSNT_04486___ 1210 AAAGCTGTTGACGTGATCAGGGAGATTGAACCGATGTCTCGCGGCTGGTA 1259
||.||.|||||.||.||..|.||.||.||||||.||...||.||||||||
BPUM_2719___m 1165 AAGGCGGTTGAGGTCATTCGTGAAATCGAACCGTTGAAACGTGGCTGGTA 1214
BSNT_04486___ 1260 TGCTGCCCCTATCGGCTGGATTGACAGCCAGGATAACGGGGAATTCGCGG 1309
|||.||.||..|.||.|||||||||...|||||.||.||.|||||.||.|
BPUM_2719___m 1215 TGCAGCACCAGTAGGGTGGATTGACTCTCAGGACAATGGAGAATTTGCTG 1264
BSNT_04486___ 1310 TAGCCATTCGTTCAGGGCTGATCGAAGGAAGCAC--TGCAAGGCTGTTTG 1357
|.||||||||.|||||.||.||.| |||||| || ||...|..||||.|
BPUM_2719___m 1265 TCGCCATTCGGTCAGGTCTTATTG-AGGAAG-ACCATGTTCGTTTGTTCG 1312
BSNT_04486___ 1358 CCGGGTGCGGTATTGTGGAAGACTC-----GGAACCAATCTCGGAATATG 1402
|.||.|||||.|||||.||.||.|| ..||.|| |||.||||
BPUM_2719___m 1313 CTGGCTGCGGCATTGTAGAGGATTCCCTTGCAAAGCA-----GGAGTATG 1357
BSNT_04486___ 1403 AAGAAACACAGATTAAATTGAAG-CCGATGATCTCTGCATTAGGAGGTGA 1451
|.||||||||..|.||||| ||| ||.|||.|.|||||..|.||||||
BPUM_2719___m 1358 AGGAAACACAAGTGAAATT-AAGACCAATGCTATCTGCGCTTGGAGGT-- 1404
BSNT_04486___ 1452 GAGGC--GTTGA---- 1461
.|.| .||||
BPUM_2719___m 1405 -TGTCCTATTGAATAA 1419
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