Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04479 and BPUM_2714
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_04479___menC.1.24716.seq
# -bsequence dna-align/BPUM_2714___menC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04479___menC-BPUM_2714___menC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04479___menC-BPUM_2714___menC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04479___menC
# 2: BPUM_2714___menC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1189
# Identity: 765/1189 (64.3%)
# Similarity: 765/1189 (64.3%)
# Gaps: 137/1189 (11.5%)
# Score: 2356.5
#
#
#=======================================
BSNT_04479___ 1 ATGATCGAAATAGAAAAAATCACGCTTTACCATTTGAGCATGAACTTAAA 50
|||||..||||.|||..|.|.||..|.||.|||.|.|..|||||..|.||
BPUM_2714___m 1 ATGATTCAAATTGAACGAGTGACTTTATATCATGTTACGATGAAGCTCAA 50
BSNT_04479___ 51 GAAACCGTTTAAAAACAGTATCGAAACGCTTC-AAGAGCGTAAATTTCTG 99
|.|.||.||||..|..|||.|.|..|| |.|| .|||.|||.|||||.|.
BPUM_2714___m 51 GCAGCCATTTACCACAAGTCTTGGGAC-CATCTCAGATCGTGAATTTATT 99
BSNT_04479___ 100 ATCGTGGAAGCCATTGATACAACAGGTGTCACAGGCTGGGGAGAAGTTTC 149
||.||.||.|..|..|||..|||.||..|.||.||.|||||||||||.||
BPUM_2714___m 100 ATTGTCGAGGTAAAAGATCAAACGGGATTGACTGGATGGGGAGAAGTGTC 149
BSNT_04479___ 150 CGCTTTCTCTTCGCCTTGGTACACCGAGGAAACCATTGGAACATGTTTGC 199
.||.||.|||||.||.|||||.||.||.||||||||||..||.||||..|
BPUM_2714___m 150 AGCCTTTTCTTCTCCGTGGTATACGGAAGAAACCATTGAGACCTGTTACC 199
BSNT_04479___ 200 ATATGCTAAAAGATTTTTTTATCCCAAATGTGGTCGGCCGTGAA--TTCA 247
|||||||.|.||.|||.|||||.||||||||| |.|.|..|.| ||.|
BPUM_2714___m 200 ATATGCTGAGAGCTTTCTTTATACCAAATGTG--CTGACACGCACCTTTA 247
BSNT_04479___ 248 ATCACCCTTCAGAAGTGCCGGACAGCCTGGCGCGTTATAAAGGAAACCGG 297
..|||||||||||..|.||.|||||||||...|..|.||||||.||..||
BPUM_2714___m 248 CACACCCTTCAGACATACCAGACAGCCTGTACCAATTTAAAGGGAATAGG 297
BSNT_04479___ 298 ATGGCAAAAGCGGGACTTGAATCGGCTGTATGGGATATCTATGCCAAAAA 347
|||||.|||||||||.|||||.|||||||.||||||||.|||||.||
BPUM_2714___m 298 ATGGCGAAAGCGGGAATTGAAGCGGCTGTTTGGGATATTTATGCGAA--- 344
BSNT_04479___ 348 GAAGGGCGT-------ATCCCTTGCTGAG--GCATTGGGCGGAACAAGAG 388
|||| |..|.||.| ||| |.|||.|||||.||.|.||
BPUM_2714___m 345 -----GCGTGAGAATAAGTCGTTAC-GAGATGTATTAGGCGGCACCAAAG 388
BSNT_04479___ 389 ATAAAGTCCCTGCCGGGGTGGTAGTCGGCCTGGCGCCTCTTGACGATATG 438
|||.|.|.|||.|.||.||.||||..||..|.|..||..||||.||.|||
BPUM_2714___m 389 ATAGAATACCTTCTGGAGTTGTAGCAGGGTTAGGACCCGTTGATGACATG 438
BSNT_04479___ 439 CTGAAGGAAATTGAGAGCTAT--------CAAAAAGAAGGTTATCAAAGA 480
||.|||.|||| |.|||.|| | ||||.|||||..|.
BPUM_2714___m 439 CTAAAGCAAAT--ACAGCAATTTGTGGACC------AAGGCTATCAGCGT 480
BSNT_04479___ 481 ATAAAAATTAAAATTCAGCCTGGGCAGGATGTGGAATTGGTCAAGGCCAT 530
.|.||..|.||||||.||||.||.|||||| |||||.| |
BPUM_2714___m 481 GTGAAGGTGAAAATTAAGCCGGGACAGGAT-----ATTGGAC-------T 518
BSNT_04479___ 531 CC--------------GCAGCCGATTCCCAAACATCCCGCTCATGGCTGA 566
|| |.|.| .||.||..||.|.||.||||||||.||
BPUM_2714___m 519 CCTTAAAAAAATTAGAGAATC--TTTTCCCCACCTTCCACTCATGGCGGA 566
BSNT_04479___ 567 TGCCAATTCATCCTATGAGCTGAAGGATATCAGCCGTTTAAAGGAGCTTG 616
|||.||.||..|.||||||.|.||||||||.|||....|.|||.||||.|
BPUM_2714___m 567 TGCAAACTCTGCTTATGAGTTAAAGGATATAAGCAAACTCAAGCAGCTCG 616
BSNT_04479___ 617 ATGACTATCATTTAATGATGATTGAGCAGCC----GCTCCAAGCTGACGA 662
|||||..||.||||.|.||||||||.||||| ||| ||.||.||
BPUM_2714___m 617 ATGACATTCGTTTATTAATGATTGAACAGCCATTAGCT----GCAGATGA 662
BSNT_04479___ 663 TATCGTTGACCACCGCCACCTGCAGAAACATTTGAAAACGGCCATTTGCC 712
||||||.||.||.|||||..||||.||.|||||.|||||..|.||.||..
BPUM_2714___m 663 TATCGTCGATCATCGCCATTTGCAAAAGCATTTAAAAACACCGATATGTT 712
BSNT_04479___ 713 TTGATGAGAGCATTTGTTCAGTTGATGATGCGAGACGGGCAATTGAGCTA 762
|.|||||.||.||||||||..|.|||||.||.|||...||..|.|||||.
BPUM_2714___m 713 TGGATGAAAGTATTTGTTCCTTAGATGACGCTAGAAAAGCTGTAGAGCTT 762
BSNT_04479___ 763 GGAAGCTGCAAAATTATTAATATAAAACCTTCTCGTGTCGGCGGCTTAAC 812
||.|||||..|.|||||||||.|.||.|||||.||.||.||.||..|.||
BPUM_2714___m 763 GGCAGCTGTCAGATTATTAATGTGAAGCCTTCACGAGTTGGTGGGCTGAC 812
BSNT_04479___ 813 AGAAGCCTTAAAAATTCAT-GATTTATGCAAAGAGCATCATATGCAGGTT 861
|||||||.|.|||||.||| .||||| |.|||||||||||.||.|...|.
BPUM_2714___m 813 AGAAGCCCTTAAAATCCATACATTTA-GTAAAGAGCATCAAATTCCATTA 861
BSNT_04479___ 862 TGGTGCGGCGGAATGCTGGAAACAGGCATATCAAGAGCGCAGAACGTGGC 911
|||||.||.||||||.|.|||||||||||.||..|.||||||||||||||
BPUM_2714___m 862 TGGTGTGGGGGAATGGTTGAAACAGGCATTTCCCGCGCGCAGAACGTGGC 911
BSNT_04479___ 912 GCTTGCTTCACTGCCTCAATTCACAATACCTGGCGATATATCTTCATCCT 961
.||||||||.||.||.|||||.||.||.||.||.|||||.||..|.||.|
BPUM_2714___m 912 ACTTGCTTCTCTTCCGCAATTTACTATTCCAGGTGATATTTCAGCTTCGT 961
BSNT_04479___ 962 CACGCTATTGGGATGAAGATAT--TGTAACCCCTGATATTCGTATTGATA 1009
||...||||||||..|.||||| |.|| .|||||.|||....||||.|
BPUM_2714___m 962 CAAAATATTGGGAGCAGGATATCATTTA--TCCTGAAATTAAGGTTGAAA 1009
BSNT_04479___ 1010 ATGGATTTATTTCTGTGTCAAAACAGCCTGGTT---------TAGGGGTT 1050
||||.||||||...|| .|||.||| |.||.||.
BPUM_2714___m 1010 ATGGTTTTATTGAGGT---------ACCTCGTTCCCCAGGAATGGGTGTA 1050
BSNT_04479___ 1051 GAGGTAAACCAAGA-TATTATGCG-------------AAAATATGTGACC 1086
||.|| .|| |||.|.||| .|.||
BPUM_2714___m 1051 GAAGT------GGATTATCAAGCGCTTCGTTCTTTTTCAGAT-------- 1086
BSNT_04479___ 1087 AAAATGGATGTTTTCACACAGCATGGTTAA--------- 1116
|||||.||.||.||.|||.|.||||.||..
BPUM_2714___m 1087 AAAATTGACGTGTTTACAAAACATGATTTTGTGATGTGA 1125
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