Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04470 and BPUM_2711
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_04470___ythB.1.24716.seq
# -bsequence dna-align/BPUM_2711.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04470___ythB-BPUM_2711.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04470___ythB-BPUM_2711.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04470___ythB
# 2: BPUM_2711
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1092
# Identity: 728/1092 (66.7%)
# Similarity: 728/1092 (66.7%)
# Gaps: 90/1092 ( 8.2%)
# Score: 2340.5
#
#
#=======================================
BSNT_04470___ 1 ------ATGGAGATTTCAACTGACGCTCTGATCGCCATCTCAATTATCTG 44
|||||..|..|||||||.||.||.||.||.|||.|.||..|.||
BPUM_2711 1 ATGCAAATGGATGTGACAACTGATGCACTCATTGCAATCACCATCTTATG 50
BSNT_04470___ 45 GGGCTTTGTGTTTATTTACGCCGTCATGGCGACAATGGATTTTGGAGCGG 94
|||.||.||.|||||.||.||.||.|||||..||||||||||.||.||.|
BPUM_2711 51 GGGGTTCGTTTTTATCTATGCAGTGATGGCATCAATGGATTTCGGCGCAG 100
BSNT_04470___ 95 GATTTTGGTCTATGATCTATTTAAACAAGGAGCATATGAAGGCCACCGAT 144
||||||||||.|||||.|||.|.||.||.||.||.|..||||||.|..||
BPUM_2711 101 GATTTTGGTCCATGATTTATATGAATAAAGAACAAACAAAGGCCGCTAAT 150
BSNT_04470___ 145 ATTGCGAATCGCTTTTTGTCCCCGACTTGGGAGGTCACAAACGTCTTTAT 194
||.||.|||...|...|.||.||.||.|||||.||.||.|||||.||.||
BPUM_2711 151 ATCGCAAATAAGTACCTCTCTCCAACATGGGAAGTAACGAACGTATTCAT 200
BSNT_04470___ 195 TGTGGCCATCGTCGTGGCGCTTTTCAGTTTTTTCCCCGGCGCGACATTTG 244
||||||.||.||.||.|||.|.||.||..|.||.||.||.|||||.||||
BPUM_2711 201 TGTGGCAATTGTTGTTGCGTTGTTTAGCATGTTTCCAGGTGCGACCTTTG 250
BSNT_04470___ 245 TGCTCGGCACCGTTTTATTAATTCCCGGAAGCATGATTTTACTGCTTTTA 294
|.||.||.||.|||||||||||.||.||.|||||.||.|||.|||||.|.
BPUM_2711 251 TCCTTGGTACTGTTTTATTAATACCAGGCAGCATTATATTATTGCTTCTT 300
BSNT_04470___ 295 GCGATTCGAAGCGGATTTCTCGTGTTTTC----------------AAATA 328
||..|.||||||||.||||||||.||||| |||||
BPUM_2711 301 GCACTGCGAAGCGGGTTTCTCGTATTTTCTCATTCTCTTCCTAAAAAATA 350
BSNT_04470___ 329 CAGCAAAGGAGCGGAAAACGCTAAGATATATTTCCGGCATCTCCGGCTTT 378
|||.||||.|| |.|..||.|||||.||.||...|||||||
BPUM_2711 351 CAGAAAAGCAG----------TGACTTACATTTCAGGGATTAGCGGCTTT 390
BSNT_04470___ 379 ATCATTCCTGCTATTTTAATTTTGGTGCTTCCTGTGACACACGGAGGGTT 428
||||||||..|.||..|.||..||||.|||||..|.||.||.||.||.||
BPUM_2711 391 ATCATTCCATCGATCCTCATCATGGTTCTTCCGATTACTCATGGTGGATT 440
BSNT_04470___ 429 TAT--------AGAAAAAACGGATGGAATCTATAAC---TTAAATAT--G 465
.|| ||||.|| |.||.|| |||.||.| |
BPUM_2711 441 CATCTTTAAGCAGAACAA-----------CAATTACTCATTAGATCTTGG 479
BSNT_04470___ 466 TCTAAAATCTTTTCAAGCCCCAACGCCTATTCATTTATCGGGTTTGCGAT 515
.|| ..|||||.|.||..|.||.|.||||||.|||.||||.|||||.||
BPUM_2711 480 ACT--GGTCTTTACGAGTGCAAATGTCTATTCTTTTGTCGGCTTTGCCAT 527
BSNT_04470___ 516 TTTAAGCACCTTATTTTTGTCCTCGCTGCTGCTTGCAGATGTTTCAAATG 565
|||.||||||.|.|||.|.||.||..||||..|.||.|||.|.|||||||
BPUM_2711 528 TTTCAGCACCCTTTTTCTTTCATCATTGCTTTTAGCTGATTTCTCAAATG 577
BSNT_04470___ 566 TGGCAGAGGAACAGGATGCGTACCGAGC--CTACAGAAAAAGCGCCCTGA 613
||||.||.|||.|.||.||.||| ||| .||..|||||.|.||.||.|
BPUM_2711 578 TGGCTGATGAAGATGAAGCTTAC--AGCATTTATCGAAAAGGAGCGCTCA 625
BSNT_04470___ 614 TTACCGGCCCGATTTCACTGTTGTTTGCAGTATGCATTATGGTGACAATG 663
||||.||.|||.||||.||..||.|.||..|.|.|||.|||.|||||.|.
BPUM_2711 626 TTACGGGTCCGCTTTCGCTCATGATGGCCTTTTTCATCATGCTGACATTA 675
BSNT_04470___ 664 CGGAATGAAGCAAACTGGCTGTACAGCGGAATGATGAATGATTTTACTTG 713
.|.|..||.|||||.|||||||.||....|||||||.|..|.||..||..
BPUM_2711 676 AGAAGCGAGGCAAATTGGCTGTTCACAAAAATGATGCAGAACTTCCCTAT 725
BSNT_04470___ 714 GATTATTGCATCGTTCATCACATTTGTCATTGCT----GGAATCGCTCT- 758
..||.|||.|||..||.|.| |||..||||| ||..|.|||||
BPUM_2711 726 TCTTCTTGTATCACTCTTGA----TGTTTTTGCTAGCAGGGCTGGCTCTA 771
BSNT_04470___ 759 TTTTCTGCCTAACAAA-AGC---TTTGGGCAAAACATCGGAAA-----AC 799
|||| ||.|||| ||| ||| ||.||||||||| .|
BPUM_2711 772 TTTT-----TACCAAATAGCCGGTTT-----AAGCATCGGAAAGGCAGGC 811
BSNT_04470___ 800 CGCGTCTCGCACTTGTTGCGATTGGGATACAGTATTTTCTCGCAAGCTAC 849
|.|||.|.||..|..||||||||...||.||.||||||.|.|||||||||
BPUM_2711 812 CTCGTTTAGCTGTCATTGCGATTACCATTCAATATTTTTTAGCAAGCTAC 861
BSNT_04470___ 850 GCGTACGGGCGGGCGCATCTTCCGTATATGATTTATCCCGATGTGACAGT 899
|.||||||.||.||.|||.|.||.||||||...|||||.|||.|.|||.|
BPUM_2711 862 GTGTACGGACGCGCCCATTTGCCTTATATGGCCTATCCAGATATTACAAT 911
BSNT_04470___ 900 CATGTCAGGCTTCACAGAGCCAGCAACGTTCAGAGCGCTGTTTGCAACGT 949
||||||.||.||.|||||.||.|..||.||.|||||..|.|||...||||
BPUM_2711 912 CATGTCTGGATTTACAGACCCTGTGACATTTAGAGCATTATTTATCACGT 961
BSNT_04470___ 950 ATATCGTTGCATTTATCATTCTATTTCCGGGCTTCTTTTTCTTCTGGAAA 999
||||.||.|..||||||||..|||||||.||.||||.|||||||||||.|
BPUM_2711 962 ATATTGTAGGTTTTATCATCTTATTTCCTGGGTTCTATTTCTTCTGGAGA 1011
BSNT_04470___ 1000 ATGTTTATGCGAGATAAACGCTATATCCGCCAGGAGGAATAG 1041
.||||||||...|||||.||||||||.||||||||.||.||.
BPUM_2711 1012 TTGTTTATGAAGGATAAGCGCTATATTCGCCAGGAAGATTAA 1053
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