Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04468 and E2

See Amino acid alignment / Visit BSNT_04468 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04468___rpmE2.1.24716.seq
#    -bsequence dna-align/BPUM_2709___rpmE2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04468___rpmE2-BPUM_2709___rpmE2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04468___rpmE2-BPUM_2709___rpmE2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04468___rpmE2
# 2: BPUM_2709___rpmE2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     187/254 (73.6%)
# Similarity:   187/254 (73.6%)
# Gaps:          16/254 ( 6.3%)
# Score: 675.5
# 
#
#=======================================

BSNT_04468___      1 ATGAAAGAAGGAATTCATCCAAAGAACCACA----AAGTGATATTTCAGG     46
                     .|||||..||..||||||||    ||||.||    ||||..|||||..||
BPUM_2709___r      1 TTGAAAAGAGATATTCATCC----AACCTCACATGAAGTTGTATTTATGG     46

BSNT_04468___     47 ATGTCAACAGCGGCTACCGTTTTCTCAGCACCTCTACGAAAACATCTAAT     96
                     |.||.||||||||||||||.|||.|.||.|..||.||.||..||||.|||
BPUM_2709___r     47 ACGTAAACAGCGGCTACCGCTTTTTGAGTAAATCGACAAAGTCATCCAAT     96

BSNT_04468___     97 GAAACAGCAGAGTGGGAAGACGGAAACACATATCCTGTCATTAAAGTAGA    146
                     ||.||||.|||.|||||||||||.||.||.||.||||||||.||||||||
BPUM_2709___r     97 GAGACAGTAGAATGGGAAGACGGGAAAACGTACCCTGTCATAAAAGTAGA    146

BSNT_04468___    147 GGTAAGTTCTGACACGCATCCGTTTTATACAGGCCGCCAGAAATTCAATG    196
                     ...|||.|||||.||||||||.|||||||||||.|||||.||||||...|
BPUM_2709___r    147 AACAAGCTCTGATACGCATCCTTTTTATACAGGACGCCAAAAATTCGGAG    196

BSNT_04468___    197 AAAAAGGCGGACGAGTTGAGCAGTTCAA-AAAACGCTATAACATGGGGAA    245
                     |||||||||||.|||..|||..|||.|| ||||.| |||.|.|||     
BPUM_2709___r    197 AAAAAGGCGGAAGAGCCGAGTTGTTTAAGAAAAAG-TATCAAATG-----    240

BSNT_04468___    246 ATAA    249
                      |||
BPUM_2709___r    241 -TAA    243


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