Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04460 and BPUM_2701
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:01
# Commandline: needle
# -asequence dna-align/BSNT_04460___ytkC.1.24716.seq
# -bsequence dna-align/BPUM_2701___ytkC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04460___ytkC-BPUM_2701___ytkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04460___ytkC-BPUM_2701___ytkC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04460___ytkC
# 2: BPUM_2701___ytkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity: 285/439 (64.9%)
# Similarity: 285/439 (64.9%)
# Gaps: 68/439 (15.5%)
# Score: 841.0
#
#
#=======================================
BSNT_04460___ 1 ------ATGGATAGAGACTTTGGCATCTTTTCGTT-TTTAGCAGTCAGCG 43
|.|||| ||.|||||||||||||| |||| |||||||..
BPUM_2701___y 1 GTGAGCAAGGAT------TTAGGCATCTTTTCGTTGTTTA-CAGTCAGTT 43
BSNT_04460___ 44 TTTCAGCAGCGGGTTTTTTCTTTGGAGGTTTTCAG--TATTCATTTCTGA 91
|.|||||...|||.|||.|.|||||.|| ..||| ||||.|.|..|||
BPUM_2701___y 44 TGTCAGCGATGGGCTTTCTGTTTGGTGG--AGCAGGATATTTACTGATGA 91
BSNT_04460___ 92 TTTTGCTCTCTCTTATGGCAATTGAATTTATCAGTACGA----------- 130
|.||..|..|.||.|||||.||||||||.||..||.|.|
BPUM_2701___y 92 TATTAGTAACACTCATGGCGATTGAATTAATTTGTTCAAGCCTAAGAGAA 141
BSNT_04460___ 131 -CTTTGA-AGGAAACCATTATTCACAAACTGTCATTTAAAAAGGTATT-- 176
|||||| ||||.|.| |||||| || |||.||.||
BPUM_2701___y 142 TCTTTGACAGGACAGC-----TCACAA--TG--------AAACGTTTTTC 176
BSNT_04460___ 177 TGCCCGGCTTG-TCAAAAAATTAGTCACGCTGGCTCTGATCTC--TGTAT 223
|.|.||||||| ||.|||.||| ||.|||.|...|.|.||.|| ||
BPUM_2701___y 177 TACGCGGCTTGTTCGAAAGATT-GTGACGGTCTTTTTAATATCGATG--- 222
BSNT_04460___ 224 GC-CACTTTTTTGA--TCAGCTGCTGAATACACA-GGGATCAATTCGTGA 269
|| ||.||.||||| ||| |||||||.|||.| ||||| .|||...||
BPUM_2701___y 223 GCTCATTTCTTTGATGTCA--TGCTGAAGACAAACGGGAT-GATTAAGGA 269
BSNT_04460___ 270 CTTGGCTATTATGTTTTATATTCTTTATGAATCTGTGCAAATTGTTGTGA 319
.||.||.||.||.|||||||||.|||||||||||...|||||.||...||
BPUM_2701___y 270 TTTAGCGATCATCTTTTATATTATTTATGAATCTTACCAAATCGTCTCGA 319
BSNT_04460___ 320 CAGCCAGTTCTCTTGGCATACCGGTTCCTCAGATGCTTGTCGATCTTTTA 369
||||||.|.|.||.||.||.||..||||.|||.||.||.|.|||.|.||.
BPUM_2701___y 320 CAGCCAATGCCCTCGGAATTCCTATTCCACAGTTGTTTATTGATGTGTTG 369
BSNT_04460___ 370 GAAACGTTAAAAAATAAATTTAAGCGCAAA---CCGTAA 405
||.|.||||||||||||||| ||||||| ||||||
BPUM_2701___y 370 GACATGTTAAAAAATAAATT---GCGCAAAAAGCCGTAA 405
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