Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04460 and BPUM_2701

See Amino acid alignment / Visit BSNT_04460 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04460___ytkC.1.24716.seq
#    -bsequence dna-align/BPUM_2701___ytkC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04460___ytkC-BPUM_2701___ytkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04460___ytkC-BPUM_2701___ytkC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04460___ytkC
# 2: BPUM_2701___ytkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity:     285/439 (64.9%)
# Similarity:   285/439 (64.9%)
# Gaps:          68/439 (15.5%)
# Score: 841.0
# 
#
#=======================================

BSNT_04460___      1 ------ATGGATAGAGACTTTGGCATCTTTTCGTT-TTTAGCAGTCAGCG     43
                           |.||||      ||.|||||||||||||| |||| |||||||..
BPUM_2701___y      1 GTGAGCAAGGAT------TTAGGCATCTTTTCGTTGTTTA-CAGTCAGTT     43

BSNT_04460___     44 TTTCAGCAGCGGGTTTTTTCTTTGGAGGTTTTCAG--TATTCATTTCTGA     91
                     |.|||||...|||.|||.|.|||||.||  ..|||  ||||.|.|..|||
BPUM_2701___y     44 TGTCAGCGATGGGCTTTCTGTTTGGTGG--AGCAGGATATTTACTGATGA     91

BSNT_04460___     92 TTTTGCTCTCTCTTATGGCAATTGAATTTATCAGTACGA-----------    130
                     |.||..|..|.||.|||||.||||||||.||..||.|.|           
BPUM_2701___y     92 TATTAGTAACACTCATGGCGATTGAATTAATTTGTTCAAGCCTAAGAGAA    141

BSNT_04460___    131 -CTTTGA-AGGAAACCATTATTCACAAACTGTCATTTAAAAAGGTATT--    176
                      |||||| ||||.|.|     ||||||  ||        |||.||.||  
BPUM_2701___y    142 TCTTTGACAGGACAGC-----TCACAA--TG--------AAACGTTTTTC    176

BSNT_04460___    177 TGCCCGGCTTG-TCAAAAAATTAGTCACGCTGGCTCTGATCTC--TGTAT    223
                     |.|.||||||| ||.|||.||| ||.|||.|...|.|.||.||  ||   
BPUM_2701___y    177 TACGCGGCTTGTTCGAAAGATT-GTGACGGTCTTTTTAATATCGATG---    222

BSNT_04460___    224 GC-CACTTTTTTGA--TCAGCTGCTGAATACACA-GGGATCAATTCGTGA    269
                     || ||.||.|||||  |||  |||||||.|||.| ||||| .|||...||
BPUM_2701___y    223 GCTCATTTCTTTGATGTCA--TGCTGAAGACAAACGGGAT-GATTAAGGA    269

BSNT_04460___    270 CTTGGCTATTATGTTTTATATTCTTTATGAATCTGTGCAAATTGTTGTGA    319
                     .||.||.||.||.|||||||||.|||||||||||...|||||.||...||
BPUM_2701___y    270 TTTAGCGATCATCTTTTATATTATTTATGAATCTTACCAAATCGTCTCGA    319

BSNT_04460___    320 CAGCCAGTTCTCTTGGCATACCGGTTCCTCAGATGCTTGTCGATCTTTTA    369
                     ||||||.|.|.||.||.||.||..||||.|||.||.||.|.|||.|.||.
BPUM_2701___y    320 CAGCCAATGCCCTCGGAATTCCTATTCCACAGTTGTTTATTGATGTGTTG    369

BSNT_04460___    370 GAAACGTTAAAAAATAAATTTAAGCGCAAA---CCGTAA    405
                     ||.|.|||||||||||||||   |||||||   ||||||
BPUM_2701___y    370 GACATGTTAAAAAATAAATT---GCGCAAAAAGCCGTAA    405


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