Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04457 and BPUM_2696

See Amino acid alignment / Visit BSNT_04457 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_04457___ytlD.1.24716.seq
#    -bsequence dna-align/BPUM_2696___ytlD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04457___ytlD-BPUM_2696___ytlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04457___ytlD-BPUM_2696___ytlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04457___ytlD
# 2: BPUM_2696___ytlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 863
# Identity:     544/863 (63.0%)
# Similarity:   544/863 (63.0%)
# Gaps:         118/863 (13.7%)
# Score: 1668.0
# 
#
#=======================================

BSNT_04457___      1 TTGAGAAACAGCAAAGAAACCATTGATCTGCTTCACGAGCAG--TATC--     46
                     ||||.|.||||            ||||||..|.||.||  ||  ||||  
BPUM_2696___y      1 TTGAAACACAG------------TGATCTATTACATGA--AGCCTATCGC     36

BSNT_04457___     47 -AATTCAAACAGAAAAAGGAAAAGTGGA----AGGTCCATTCCTTTCAGC     91
                      ||   |||.|.|.||.||||||..|||    |.||  ||  ||.|||||
BPUM_2696___y     37 AAA---AAATACAGAATGGAAAAACGGATCACACGT--AT--CTATCAGC     79

BSNT_04457___     92 TTGCCATATT----------TATTCTCTTTTTCTCGGGCTGGGAAATCTC    131
                     |...||||||          |.|||.|||          |||||..|..|
BPUM_2696___y     80 TCATCATATTCGCCAGCTTCTTTTCACTT----------TGGGAGCTTGC    119

BSNT_04457___    132 CAG------CAGGCAGGGCTGGATCGATCCGCTGATCTTCAGCTCTCCAT    175
                     .||      ||||      |..||.||||||||.||.|||||..|.||||
BPUM_2696___y    120 TAGTCATTTCAGG------TTCATTGATCCGCTTATTTTCAGTGCACCAT    163

BSNT_04457___    176 CAGCTGTGTGGCGATTATTGCTGGAGAAACTTGGTGACGGTTCTTTACTG    225
                     ||||.||.||.|.|||.||..||.|.|||.||...||.|||||||||.||
BPUM_2696___y    164 CAGCGGTCTGCCAATTGTTTGTGCAAAAAATTCAAGATGGTTCTTTAATG    213

BSNT_04457___    226 TCACACATCGGCGTCACTTTATTTGAAACGGTGCTTGGCTTTTTGCTCGG    275
                     ...||.||..|..|.||.|||||||||||.|||||.||.|||.|.||.||
BPUM_2696___y    214 AATCATATGAGTATTACATTATTTGAAACAGTGCTCGGTTTTCTACTTGG    263

BSNT_04457___    276 GACGTTTATG-GGCACGTGCCTAGCCGCTTTGTTATGGTGGTCTAACCGA    324
                     .||.||| || ||||..|..||.|||||....|||||||||||.|.||||
BPUM_2696___y    264 TACCTTT-TGCGGCATTTTGCTCGCCGCCGCCTTATGGTGGTCCACCCGA    312

BSNT_04457___    325 CTTGCCAGAATTTTAGATCCGTATCTTGTGATTTTGAACGCAATGCCGAA    374
                     .|.||.|...||.|.||.||.|||.|.||.|||||.||.||.|||||.||
BPUM_2696___y    313 TTAGCAAACGTTCTTGACCCTTATTTAGTCATTTTAAATGCCATGCCAAA    362

BSNT_04457___    375 AGTGGCCCTGGGCCCGATCCTGATTGTCGCGCTCGGTCCCAGTTTTATCA    424
                     |||||||||.|.|||.||..|.|||||.||.||.||.||..||.|.||||
BPUM_2696___y    363 AGTGGCCCTCGCCCCCATTTTAATTGTTGCCCTTGGACCTGGTATGATCA    412

BSNT_04457___    425 GCATCATTGCGATGGGAGCCATCATCAGCGTCATTATCACAACCATCGTT    474
                     |||||.|.||.|||||.||.|||||.||.||.||.||.||.||.|||||.
BPUM_2696___y    413 GCATCGTCGCCATGGGTGCGATCATTAGTGTGATCATAACGACGATCGTC    462

BSNT_04457___    475 GTCTATACCGCCTTCCAGGAGGTCGACGAAAACTATACGAAAGTCATGAA    524
                     .|.||.||.||.||.||.||||||||.||.||.|||...||.||.|||||
BPUM_2696___y    463 ATTTACACTGCTTTTCAAGAGGTCGATGAGAATTATTTAAAGGTGATGAA    512

BSNT_04457___    525 AACATTCGGCGCAAAAAAGTGGGTTATTTTTAAAGAAGTCATACTGCCTG    574
                     |||.||.||.||.|.|||..|.|||.|.|||..|||.|||||..||||.|
BPUM_2696___y    513 AACCTTTGGTGCGAGAAAAAGCGTTGTCTTTCGAGAGGTCATTTTGCCAG    562

BSNT_04457___    575 C----ATCCTCCCCCGCGATTATTTCAACACTAAAAGTGAACGTCGGTTT    620
                     |    ||    .||..||||.|||||..|..|.||||||||.||.|||.|
BPUM_2696___y    563 CTAGTAT----TCCAACGATGATTTCTGCCATTAAAGTGAATGTAGGTCT    608

BSNT_04457___    621 ATCATGGGTTGGCGTTATTGTAGGGGAATTCCTCGTTTC----GAAGGTC    666
                     .||.||||||||.||.||||||||.|||||.||.||.||    .||||.|
BPUM_2696___y    609 TTCTTGGGTTGGGGTCATTGTAGGAGAATTTCTTGTATCCTCAAAAGGGC    658

BSNT_04457___    667 GGATTAGGATATATGATTATTTACGGATTCCAAGTCTTCAATTTTACACT    716
                         |.||.||.|||||.||||||||.||.|||||||||||.||||||||
BPUM_2696___y    659 ----TCGGCTACATGATCATTTACGGCTTTCAAGTCTTCAACTTTACACT    704

BSNT_04457___    717 CGTCTTCTTAAGCCTGCTGATCATCGCCATCTTCGCCACTCTGATGTATC    766
                     |||.||||||||.||..|.||.||.|||.|.||.||.||..|.|||||.|
BPUM_2696___y    705 CGTGTTCTTAAGTCTTTTCATTATTGCCGTGTTTGCGACCATCATGTACC    754

BSNT_04457___    767 AG----------GGCGTCGAGC------TGCTGGAAAAGAAATGGACGAA    800
                     ||          ||| ||||.|      |.||..||||..||        
BPUM_2696___y    755 AGCTTGTGGAATGGC-TCGAACGCCGTTTTCTCCAAAAATAA--------    795

BSNT_04457___    801 GGGGAGGACATAA    813
                                  
BPUM_2696___y    795 -------------    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04457 and BPUM_2696

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
