Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04440 and BPUM_2680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04440___ytqA.1.24716.seq
# -bsequence dna-align/BPUM_2680.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04440___ytqA-BPUM_2680.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04440___ytqA-BPUM_2680.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04440___ytqA
# 2: BPUM_2680
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity: 736/983 (74.9%)
# Similarity: 736/983 (74.9%)
# Gaps: 31/983 ( 3.2%)
# Score: 2715.5
#
#
#=======================================
BSNT_04440___ 1 GT--GATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTAT 48
| ||| |||.|.||.||||||...||||||||.|..||.|||||||||
BPUM_2680 1 -TTGGAT-CAGCATAACCCTTTTTTATATTCAAACAGCGAGAAACGCTAT 48
BSNT_04440___ 49 CATACATTGAATTATCATCTCAGAGAACATTTCGGCCATAAGGTGTTTAA 98
||.||||.|||.||||||.|..||||.||.||.||.|||||.||.|||||
BPUM_2680 49 CACACATGGAACTATCATTTACGAGAGCACTTTGGTCATAAAGTATTTAA 98
BSNT_04440___ 99 AGTGGCGCTT-GACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTA 147
|||.|| ||| ||.|||||.||||||||.|||||.||.|||||.||.|||
BPUM_2680 99 AGTAGC-CTTAGATGGCGGCTTTGACTGCCCAAACCGTGATGGTACTGTA 147
BSNT_04440___ 148 GCCCACGGAGGCTGTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGC 197
|||||.|||||||||||.||||||||.||.|||||.||.||.||.|||||
BPUM_2680 148 GCCCATGGAGGCTGTACATTTTGCAGTGCCGCAGGATCTGGTGACTTTGC 197
BSNT_04440___ 198 TGGAAACCGGACCGATGATTTAATTACGCAATTCCACGACATCAAAAACC 247
.||||||.|..|.||||||.|..|.||.|||||..||||.||||||.|||
BPUM_2680 198 AGGAAACAGAGCGGATGATCTCGTCACTCAATTTAACGAAATCAAAGACC 247
BSNT_04440___ 248 GCATGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTTTCAGGCT 297
|.|||||...|||||||||.|||||.||.||.||.||.|||||||||||.
BPUM_2680 248 GGATGCATACAAAATGGAAAGACGGAAAATATATGGCATATTTTCAGGCG 297
BSNT_04440___ 298 TTCACAAACACTCACGCCCCGGTTGAGGTGCTTCGT---------GAGAA 338
|.|||||||||.|||||||| .||||.| ||.||
BPUM_2680 298 TACACAAACACACACGCCCC---------ACTTCCTGTTTTAAAGGAAAA 338
BSNT_04440___ 339 ATTCGAATCCGTCCTCGCTTTAGATGATGTGGTCGGCATTTCGATCGCCA 388
|||.|||.||||..|...|||.||||.|||||||||..|.||.||.||.|
BPUM_2680 339 ATTTGAAACCGTGATGAATTTGGATGGTGTGGTCGGTTTATCAATTGCGA 388
BSNT_04440___ 389 CACGCCCGGACTGTCTGCCTGATGATGTCGTTGATTACTTGGCAGAGCTG 438
||.|.||.|||||.|||||.|||||.||.||.||.||.||.||.||..|.
BPUM_2680 389 CAAGACCTGACTGCCTGCCAGATGACGTGGTGGAGTATTTAGCTGAATTA 438
BSNT_04440___ 439 AATGAACGCACCTATTTGTGGGTGGAGCTTGGGCTTCAAACAGTTCATGA 488
|||||.||.||.|||.|.|||||.||||||||.|||||||||||||||||
BPUM_2680 439 AATGAGCGGACTTATCTTTGGGTAGAGCTTGGTCTTCAAACAGTTCATGA 488
BSNT_04440___ 489 ACGGACTGCACTTCTGATCAACCGCGCACATGATTTTAACTGCTATGTGG 538
||||||.||..|.||.||.|||||.||.|||||||...|.|||||.||.|
BPUM_2680 489 ACGGACAGCGATGCTCATTAACCGTGCCCATGATTACGAATGCTACGTAG 538
BSNT_04440___ 539 AAGGCGTCAATAAATTAAGAAAACACGGCATACGTGTCTGCTCGCATATT 588
||||.||..|.|||.|.||||||||.|||||.|||||||||||||||||.
BPUM_2680 539 AAGGTGTAGAAAAACTGAGAAAACATGGCATTCGTGTCTGCTCGCATATC 588
BSNT_04440___ 589 ATCAATGGGCTGCCTTTGGAAGACCGGGACATGATGATGGAAACGGCAAA 638
|||||.||..|||||.|.|||.||||.||||||||||||||.||.|||||
BPUM_2680 589 ATCAACGGCTTGCCTCTTGAAAACCGCGACATGATGATGGAGACAGCAAA 638
BSNT_04440___ 639 GGCCGTCGCAGATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTCACC 688
.||.||.||.|||||.|||||.||.||.||||||||.|||.|.|||||||
BPUM_2680 639 AGCTGTGGCTGATTTAGATGTGCAAGGAATTAAAATTCATTTACTTCACC 688
BSNT_04440___ 689 TACTGAAAGGCACGCCGATGGTCAAACAATATGAAAAGGGCAAGCTGGAA 738
|..|.|||||.||.||.||||||||.|||||||||||.|||||.|||||.
BPUM_2680 689 TTTTAAAAGGAACTCCTATGGTCAAGCAATATGAAAAAGGCAAACTGGAG 738
BSNT_04440___ 739 TTTCTTTCTCAAGATGATTATGTGCAGCTCGTCTGCGATCAGCTTGAGAT 788
|||||....||.||.||.|||||.|||||.||.||.||||||||.|||||
BPUM_2680 739 TTTCTAAGCCAGGAGGAATATGTTCAGCTTGTTTGTGATCAGCTGGAGAT 788
BSNT_04440___ 789 CATTCCGCCTGAAATGATCGTCCACCGCATTACAGGTGACGGACCGATTG 838
|.|.||.||.||||||||..|.||.||.||||||||.||.||.|||||||
BPUM_2680 789 CCTGCCACCAGAAATGATTATTCATCGTATTACAGGCGATGGCCCGATTG 838
BSNT_04440___ 839 AGTTGATGATCGGGCCAATGTGGAGCGTCAACAAATGGGAAGTGCTTGGC 888
|.||.|||.|.||.|||||||||||.||.|||||.||||||||..|....
BPUM_2680 839 AATTAATGGTTGGTCCAATGTGGAGTGTAAACAAGTGGGAAGTATTAAAT 888
BSNT_04440___ 889 GCCATTAATAAAGAGCTAGAAAATCGAGGCAGCTATCAAGGAAAGTTCTT 938
|||||||||...|||||.||||..||...||||||.|||||.||...|||
BPUM_2680 889 GCCATTAATGCTGAGCTTGAAAGACGTAACAGCTACCAAGGCAAACGCTT 938
BSNT_04440___ 939 --TCAACGGCTTGAGGAGGAATCAGCGCTATGA 969
||| |.|| |||.|||.||||...||||
BPUM_2680 939 CGTCA---GATT--GGAAGAAGCAGCAAAATGA 966
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