Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04431 and BPUM_2673
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_04431___ytrF.1.24716.seq
# -bsequence dna-align/BPUM_2673___ytrF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04431___ytrF-BPUM_2673___ytrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04431___ytrF-BPUM_2673___ytrF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04431___ytrF
# 2: BPUM_2673___ytrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 887/1443 (61.5%)
# Similarity: 887/1443 (61.5%)
# Gaps: 264/1443 (18.3%)
# Score: 2489.0
#
#
#=======================================
BSNT_04431___ 1 TTGAGGTTTAAGGATCAGGTTCATTTTATCAGAAGAAATATGAAGAAAAA 50
||||..||||..||||||||..|.||.||.||||||||.|||||||||||
BPUM_2673___y 1 TTGAAATTTAGAGATCAGGTCAAATTCATTAGAAGAAACATGAAGAAAAA 50
BSNT_04431___ 51 CAGACTTCGCGTCTTTATGACGATTCTTGCGACAACAATGGCGTATG--- 97
.|||||.||.||.||||||||.|||||||||||.|||||||| |||
BPUM_2673___y 51 TAGACTACGTGTGTTTATGACCATTCTTGCGACGACAATGGC--ATGCTC 98
BSNT_04431___ 98 ---------CGTTTTTGGTTGTGCTGTCGTCCGTTGGATTTGGGATTCAA 138
||||||.| |.||.||.||.|||||..|.|||
BPUM_2673___y 99 TTTCTTAATCGTTTTAG----------CATCTGTCGGCTTTGGTCTGCAA 138
BSNT_04431___ 139 AAGACAATTACAG----ATATGACA--ATGAGCCAGCAGATTGTAACGAA 182
| ||| ||| |.||||.| ||||..|||||.||..|.||..|
BPUM_2673___y 139 A----AAT--CAGCGCAAGATGAAATTATGAAACAGCAAATCATTACTGA 182
BSNT_04431___ 183 AGT--CAGTGTAATGGGCAAGG---AAGGAGACAAGCCTATTAAAAAAGC 227
||| .||||| |.||||||| ||||.||| .|.|||..||.
BPUM_2673___y 183 AGTGAAAGTGT--TAGGCAAGGAAAAAGGTGAC------GTCAAAGTAGA 224
BSNT_04431___ 228 TGATTTAGAGAAGTATGATCACGTAAGGTCAGTTGTAGAAAGAAC-GCAA 276
|||||||.||||.||||||||.||.|..||.||.||...|||||| ||
BPUM_2673___y 225 TGATTTAAAGAAATATGATCATGTGAAATCTGTCGTCTCAAGAACAGC-- 272
BSNT_04431___ 277 ATGTATGAACCAAAC----AA-----AGCTACTTTAGGCAATCGTACAAA 317
.||.||.|.|.| || ||| |.||..|.||..|||.
BPUM_2673___y 273 ---GATCAATCCATCGGTTAACGTCGAGC-----TTGGTGACCGCTCAAG 314
BSNT_04431___ 318 TGAA--------AGCTCAAATCTCATTTTTACTAATATGAATGATGAATT 359
|||| ||||| |.||..|||||||.||.|||
BPUM_2673___y 315 TGAAACGCAGGCAGCTC-----------TAACCGATATGAAAGAAGAA-- 351
BSNT_04431___ 360 AAAGGCCAATATGGAATTGGAAAAG---------GGAAGAGTCGCAAAGT 400
|||| ||...||..||| || ||||.|||..|.|..|
BPUM_2673___y 352 AAAG---AAGCAGGGCTTG----AGCTAGACCGAGGAAAAGTTCCGACAT 394
BSNT_04431___ 401 CGGAAAATGAAATCGTAGTAGG-----ATACGACTTCGCAAAGAGATTAT 445
|.|..||.|||||.||.||.|| |||.|.||...|| |.|.|
BPUM_2673___y 395 CAGCGAACGAAATTGTGGTCGGGTATCATATGGCTGAACA-----ACTGT 439
BSNT_04431___ 446 TGACGAAAAAAGAATCG-GAAGAATATAACAAAA----AAATCGAAGA-A 489
.|||.||||||||| || .|||..|||.|.|||| ||||| ||| |
BPUM_2673___y 440 GGACAAAAAAAGAA-CGCCAAGCCTATGAAAAAAAATTAAATC--AGACA 486
BSNT_04431___ 490 GCAAAAGGC-----AAT-CCAGAGGATATAAAAGAACCAAAAGGCTATAC 533
.||||.||| ||| |||||| ||.||.||.|||||.||
BPUM_2673___y 487 TCAAATGGCGAAGAAATGCCAGAG---------GAGCCTAAGGGCTACAC 527
BSNT_04431___ 534 GAAAGACATTCTGAACAAGACGATTGAACTGAGTGTATCGAAGAC----- 578
.|||||.|||.|.||.||...||||.||.|.|..|||.|||| ||
BPUM_2673___y 528 AAAAGATATTTTAAATAAAGTGATTCAAGTCAAAGTACCGAA-ACTCAAC 576
BSNT_04431___ 579 --AGATCCTAAAACAGGGGATGT--TACAAAAACAAAAACATATGACTT- 623
|| |||| .||.|| | ||||.| ||||||||.|||.||
BPUM_2673___y 577 GAAG-----AAAA----TGAAGTCGT-CAAAGA-AAAAACATTTGATTTC 615
BSNT_04431___ 624 ----TAAAATTGTCGGTATTACAAAAAAACCATCTCAAGACTGGA-TG-- 666
|| ||.|||.|....|||||.| |||..||||| ||
BPUM_2673___y 616 CGTGTA-----GTAGGTGTGTTGAAAAAGC-----CAAACCTGGAGTGGC 655
BSNT_04431___ 667 --GAGGACTCA-AACATTTTTATCAGTGATC--AATTC----AAAAAAGA 707
||.|| ||| ||.|||.|||| || |||.| .||||.||
BPUM_2673___y 656 AAGAAGA-TCATAAAATTCTTAT------TCCAAATGCGTATGAAAAGGA 698
BSNT_04431___ 708 TTTTTCGG--AATTCTTAGAT-----TTCAAAGGC-GGAAATGTTGAAAC 749
.||| || ||.|..|.||| |.|..|||| ||||||||.||
BPUM_2673___y 699 ATTT--GGTCAAGTGCTCGATCTATCTCCTGAGGCAGGAAATGTCGA--- 743
BSNT_04431___ 750 GAACATTGG-----TGTTTTTGCTGATAAGTTTGAGAATGT-GGAACAGC 793
|||.|| | |||.|.|||.|||||.||.||.||||| ||..|| |
BPUM_2673___y 744 GAAAAT--GACCTCTGTCTATGCAGATAAATTCGACAATGTCGGTGCA-C 790
BSNT_04431___ 794 TGACAAATGATCTAACAGATGACGGGTACTATGTCACATCAGTGACTACT 843
|.||.|||.|.||.||||||||.||.|||.|.||||..||.|||||.|.|
BPUM_2673___y 791 TCACGAATAAGCTCACAGATGAGGGCTACCAAGTCATTTCTGTGACGAAT 840
BSNT_04431___ 844 GAACTTGAGGGAGCCAATACCTTCTTCATGGTCTTCAAAATCGGACTGAT 893
.|.||.||.|||....|||..|||||.|..|||||||||||.|||||.||
BPUM_2673___y 841 CAGCTCGAAGGAATGGATATGTTCTTTACAGTCTTCAAAATTGGACTTAT 890
BSNT_04431___ 894 CTTTGTCGGATGTATCGCAGTTATCATTTCAGCGATCGGCATTTTTAACA 943
.|||||.||||||||.||.||.||.|||||.||||||||.|||||.||.|
BPUM_2673___y 891 TTTTGTTGGATGTATTGCGGTCATTATTTCTGCGATCGGGATTTTCAATA 940
BSNT_04431___ 944 CGATGACGATGGCGGTGACAGAGAGAACGCAAGAGATCGGCATTATGAAA 993
|||||||.|||||.||.||||||.|.||.|||||.||.||.|||||||||
BPUM_2673___y 941 CGATGACAATGGCAGTAACAGAGCGGACACAAGAAATTGGGATTATGAAA 990
BSNT_04431___ 994 GCGATTGGGGCGAGCCCGTCAATCATTCGCCGAATGTTCTTGATGGAAAG 1043
||.|||||.||||..||.||.||.||....|||||||||.|.||||||||
BPUM_2673___y 991 GCCATTGGCGCGAATCCATCCATTATCAAGCGAATGTTCCTTATGGAAAG 1040
BSNT_04431___ 1044 CGCGTATATCGGAATTTTAGGCTGTGTGATTGGGATTATCATTTC----- 1088
.||.|||||.||..|..|.||.|...|.|||||.||||||||.||
BPUM_2673___y 1041 TGCTTATATTGGGGTGATTGGGTCGATCATTGGTATTATCATCTCATATA 1090
BSNT_04431___ 1089 -------TTACGGCGTGAGCTACCTT-GTCAACCTGGCCGTTCCGATGAT 1130
||.||.||| ||.||| .||| ||||....||
BPUM_2673___y 1091 TCATTAGTTTCGCCGT----TAACTTAATCA---------TTCCAGCCAT 1127
BSNT_04431___ 1131 TCTTGCGGCTA---CA-AGCGGAAGCGATGCGGGCGACTTGAA----TTA 1172
|.|..||.||| || || ||| |||..|..|||| ||.
BPUM_2673___y 1128 TTTATCGTCTATGTCAGAG-GGA--------GGGTCAAGTGAACAATTTT 1168
BSNT_04431___ 1173 C----ACATTCTCCTACATCCCGGCGAGTCTTGTGATCATTGCCGTTGTG 1218
| ||.|||||||||||.||....||.||||||||.|..||....|||
BPUM_2673___y 1169 CGATTACCTTCTCCTACATTCCACTTAGCCTTGTGATTACAGCAACAGTG 1218
BSNT_04431___ 1219 ATTTGCGGAGGGGTCGCAGTCATTTCCGGAATGAACCCGGCTAGAAAAGC 1268
|||.|.|.||||||.||..||.||||.||..|.|||||.||..|.|||||
BPUM_2673___y 1219 ATTAGTGCAGGGGTAGCCATCCTTTCAGGGCTCAACCCAGCACGTAAAGC 1268
BSNT_04431___ 1269 AACAAAAACCAACGTGCTGACAGCGTTGAGAAGAGAACTATAA 1311
|||||||||.||.||..|..||||.||.|||||||||.|.|||
BPUM_2673___y 1269 AACAAAAACGAATGTATTAGCAGCATTAAGAAGAGAAATCTAA 1311
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