Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04431 and BPUM_2673

See Amino acid alignment / Visit BSNT_04431 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_04431___ytrF.1.24716.seq
#    -bsequence dna-align/BPUM_2673___ytrF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04431___ytrF-BPUM_2673___ytrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04431___ytrF-BPUM_2673___ytrF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04431___ytrF
# 2: BPUM_2673___ytrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity:     887/1443 (61.5%)
# Similarity:   887/1443 (61.5%)
# Gaps:         264/1443 (18.3%)
# Score: 2489.0
# 
#
#=======================================

BSNT_04431___      1 TTGAGGTTTAAGGATCAGGTTCATTTTATCAGAAGAAATATGAAGAAAAA     50
                     ||||..||||..||||||||..|.||.||.||||||||.|||||||||||
BPUM_2673___y      1 TTGAAATTTAGAGATCAGGTCAAATTCATTAGAAGAAACATGAAGAAAAA     50

BSNT_04431___     51 CAGACTTCGCGTCTTTATGACGATTCTTGCGACAACAATGGCGTATG---     97
                     .|||||.||.||.||||||||.|||||||||||.||||||||  |||   
BPUM_2673___y     51 TAGACTACGTGTGTTTATGACCATTCTTGCGACGACAATGGC--ATGCTC     98

BSNT_04431___     98 ---------CGTTTTTGGTTGTGCTGTCGTCCGTTGGATTTGGGATTCAA    138
                              ||||||.|          |.||.||.||.|||||..|.|||
BPUM_2673___y     99 TTTCTTAATCGTTTTAG----------CATCTGTCGGCTTTGGTCTGCAA    138

BSNT_04431___    139 AAGACAATTACAG----ATATGACA--ATGAGCCAGCAGATTGTAACGAA    182
                     |    |||  |||    |.||||.|  ||||..|||||.||..|.||..|
BPUM_2673___y    139 A----AAT--CAGCGCAAGATGAAATTATGAAACAGCAAATCATTACTGA    182

BSNT_04431___    183 AGT--CAGTGTAATGGGCAAGG---AAGGAGACAAGCCTATTAAAAAAGC    227
                     |||  .|||||  |.|||||||   ||||.|||      .|.|||..||.
BPUM_2673___y    183 AGTGAAAGTGT--TAGGCAAGGAAAAAGGTGAC------GTCAAAGTAGA    224

BSNT_04431___    228 TGATTTAGAGAAGTATGATCACGTAAGGTCAGTTGTAGAAAGAAC-GCAA    276
                     |||||||.||||.||||||||.||.|..||.||.||...|||||| ||  
BPUM_2673___y    225 TGATTTAAAGAAATATGATCATGTGAAATCTGTCGTCTCAAGAACAGC--    272

BSNT_04431___    277 ATGTATGAACCAAAC----AA-----AGCTACTTTAGGCAATCGTACAAA    317
                        .||.||.|.|.|    ||     |||     |.||..|.||..|||.
BPUM_2673___y    273 ---GATCAATCCATCGGTTAACGTCGAGC-----TTGGTGACCGCTCAAG    314

BSNT_04431___    318 TGAA--------AGCTCAAATCTCATTTTTACTAATATGAATGATGAATT    359
                     ||||        |||||           |.||..|||||||.||.|||  
BPUM_2673___y    315 TGAAACGCAGGCAGCTC-----------TAACCGATATGAAAGAAGAA--    351

BSNT_04431___    360 AAAGGCCAATATGGAATTGGAAAAG---------GGAAGAGTCGCAAAGT    400
                     ||||   ||...||..|||    ||         ||||.|||..|.|..|
BPUM_2673___y    352 AAAG---AAGCAGGGCTTG----AGCTAGACCGAGGAAAAGTTCCGACAT    394

BSNT_04431___    401 CGGAAAATGAAATCGTAGTAGG-----ATACGACTTCGCAAAGAGATTAT    445
                     |.|..||.|||||.||.||.||     |||.|.||...||     |.|.|
BPUM_2673___y    395 CAGCGAACGAAATTGTGGTCGGGTATCATATGGCTGAACA-----ACTGT    439

BSNT_04431___    446 TGACGAAAAAAGAATCG-GAAGAATATAACAAAA----AAATCGAAGA-A    489
                     .|||.||||||||| || .|||..|||.|.||||    |||||  ||| |
BPUM_2673___y    440 GGACAAAAAAAGAA-CGCCAAGCCTATGAAAAAAAATTAAATC--AGACA    486

BSNT_04431___    490 GCAAAAGGC-----AAT-CCAGAGGATATAAAAGAACCAAAAGGCTATAC    533
                     .||||.|||     ||| ||||||         ||.||.||.|||||.||
BPUM_2673___y    487 TCAAATGGCGAAGAAATGCCAGAG---------GAGCCTAAGGGCTACAC    527

BSNT_04431___    534 GAAAGACATTCTGAACAAGACGATTGAACTGAGTGTATCGAAGAC-----    578
                     .|||||.|||.|.||.||...||||.||.|.|..|||.|||| ||     
BPUM_2673___y    528 AAAAGATATTTTAAATAAAGTGATTCAAGTCAAAGTACCGAA-ACTCAAC    576

BSNT_04431___    579 --AGATCCTAAAACAGGGGATGT--TACAAAAACAAAAACATATGACTT-    623
                       ||     ||||    .||.||  | ||||.| ||||||||.|||.|| 
BPUM_2673___y    577 GAAG-----AAAA----TGAAGTCGT-CAAAGA-AAAAACATTTGATTTC    615

BSNT_04431___    624 ----TAAAATTGTCGGTATTACAAAAAAACCATCTCAAGACTGGA-TG--    666
                         ||     ||.|||.|....|||||.|     |||..||||| ||  
BPUM_2673___y    616 CGTGTA-----GTAGGTGTGTTGAAAAAGC-----CAAACCTGGAGTGGC    655

BSNT_04431___    667 --GAGGACTCA-AACATTTTTATCAGTGATC--AATTC----AAAAAAGA    707
                       ||.|| ||| ||.|||.||||      ||  |||.|    .||||.||
BPUM_2673___y    656 AAGAAGA-TCATAAAATTCTTAT------TCCAAATGCGTATGAAAAGGA    698

BSNT_04431___    708 TTTTTCGG--AATTCTTAGAT-----TTCAAAGGC-GGAAATGTTGAAAC    749
                     .|||  ||  ||.|..|.|||     |.|..|||| ||||||||.||   
BPUM_2673___y    699 ATTT--GGTCAAGTGCTCGATCTATCTCCTGAGGCAGGAAATGTCGA---    743

BSNT_04431___    750 GAACATTGG-----TGTTTTTGCTGATAAGTTTGAGAATGT-GGAACAGC    793
                     |||.||  |     |||.|.|||.|||||.||.||.||||| ||..|| |
BPUM_2673___y    744 GAAAAT--GACCTCTGTCTATGCAGATAAATTCGACAATGTCGGTGCA-C    790

BSNT_04431___    794 TGACAAATGATCTAACAGATGACGGGTACTATGTCACATCAGTGACTACT    843
                     |.||.|||.|.||.||||||||.||.|||.|.||||..||.|||||.|.|
BPUM_2673___y    791 TCACGAATAAGCTCACAGATGAGGGCTACCAAGTCATTTCTGTGACGAAT    840

BSNT_04431___    844 GAACTTGAGGGAGCCAATACCTTCTTCATGGTCTTCAAAATCGGACTGAT    893
                     .|.||.||.|||....|||..|||||.|..|||||||||||.|||||.||
BPUM_2673___y    841 CAGCTCGAAGGAATGGATATGTTCTTTACAGTCTTCAAAATTGGACTTAT    890

BSNT_04431___    894 CTTTGTCGGATGTATCGCAGTTATCATTTCAGCGATCGGCATTTTTAACA    943
                     .|||||.||||||||.||.||.||.|||||.||||||||.|||||.||.|
BPUM_2673___y    891 TTTTGTTGGATGTATTGCGGTCATTATTTCTGCGATCGGGATTTTCAATA    940

BSNT_04431___    944 CGATGACGATGGCGGTGACAGAGAGAACGCAAGAGATCGGCATTATGAAA    993
                     |||||||.|||||.||.||||||.|.||.|||||.||.||.|||||||||
BPUM_2673___y    941 CGATGACAATGGCAGTAACAGAGCGGACACAAGAAATTGGGATTATGAAA    990

BSNT_04431___    994 GCGATTGGGGCGAGCCCGTCAATCATTCGCCGAATGTTCTTGATGGAAAG   1043
                     ||.|||||.||||..||.||.||.||....|||||||||.|.||||||||
BPUM_2673___y    991 GCCATTGGCGCGAATCCATCCATTATCAAGCGAATGTTCCTTATGGAAAG   1040

BSNT_04431___   1044 CGCGTATATCGGAATTTTAGGCTGTGTGATTGGGATTATCATTTC-----   1088
                     .||.|||||.||..|..|.||.|...|.|||||.||||||||.||     
BPUM_2673___y   1041 TGCTTATATTGGGGTGATTGGGTCGATCATTGGTATTATCATCTCATATA   1090

BSNT_04431___   1089 -------TTACGGCGTGAGCTACCTT-GTCAACCTGGCCGTTCCGATGAT   1130
                            ||.||.|||    ||.||| .|||         ||||....||
BPUM_2673___y   1091 TCATTAGTTTCGCCGT----TAACTTAATCA---------TTCCAGCCAT   1127

BSNT_04431___   1131 TCTTGCGGCTA---CA-AGCGGAAGCGATGCGGGCGACTTGAA----TTA   1172
                     |.|..||.|||   || || |||        |||..|..||||    ||.
BPUM_2673___y   1128 TTTATCGTCTATGTCAGAG-GGA--------GGGTCAAGTGAACAATTTT   1168

BSNT_04431___   1173 C----ACATTCTCCTACATCCCGGCGAGTCTTGTGATCATTGCCGTTGTG   1218
                     |    ||.|||||||||||.||....||.||||||||.|..||....|||
BPUM_2673___y   1169 CGATTACCTTCTCCTACATTCCACTTAGCCTTGTGATTACAGCAACAGTG   1218

BSNT_04431___   1219 ATTTGCGGAGGGGTCGCAGTCATTTCCGGAATGAACCCGGCTAGAAAAGC   1268
                     |||.|.|.||||||.||..||.||||.||..|.|||||.||..|.|||||
BPUM_2673___y   1219 ATTAGTGCAGGGGTAGCCATCCTTTCAGGGCTCAACCCAGCACGTAAAGC   1268

BSNT_04431___   1269 AACAAAAACCAACGTGCTGACAGCGTTGAGAAGAGAACTATAA   1311
                     |||||||||.||.||..|..||||.||.|||||||||.|.|||
BPUM_2673___y   1269 AACAAAAACGAATGTATTAGCAGCATTAAGAAGAGAAATCTAA   1311


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