Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04424 and BPUM_2672

See Amino acid alignment / Visit BSNT_04424 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_04424___yttA.1.24716.seq
#    -bsequence dna-align/BPUM_2672___yttA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04424___yttA-BPUM_2672___yttA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04424___yttA-BPUM_2672___yttA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04424___yttA
# 2: BPUM_2672___yttA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity:     464/853 (54.4%)
# Similarity:   464/853 (54.4%)
# Gaps:         260/853 (30.5%)
# Score: 1047.0
# 
#
#=======================================

BSNT_04424___      1 ATGGAAATGGTATTAGCATTCTTAGGTTTTCTGGCATGTCT---CATTGC     47
                     |||   |||.||.|  || ||.|||||.||.|   ||||.|   ..||||
BPUM_2672___y      1 ATG---ATGTTACT--CA-TCATAGGTCTTTT---ATGTGTTTGTTTTGC     41

BSNT_04424___     48 ACTGGGCTATGGATTATATCACCTTGTCAGATAT----GTACTGAAAAA-     92
                     ..|.||.||||          ||  |||| ||.|    .||||.|||.| 
BPUM_2672___y     42 CATTGGATATG----------CC--GTCA-ATTTCTTCTTACTCAAACAC     78

BSNT_04424___     93 -GGAA-----AAACGTTTCTCAAAGAGACTTTTTTGGCCGCTTTTCATTG    136
                      .|||     |||..||| |||||||.|.|.||||..||..|.||.||  
BPUM_2672___y     79 CAGAATGCGCAAATCTTT-TCAAAGAAATTATTTTATCCTTTCTTGAT--    125

BSNT_04424___    137 GAGGCCTTGTG-CTGCTCTTTACCGGGGCAGCAT--TGGCAGAACC---T    180
                          ||||.| ||..|||||.|        |||  ||.||..|||   |
BPUM_2672___y    126 -----CTTGGGTCTCATCTTTTC--------CATTATGTCATTACCATTT    162

BSNT_04424___    181 GACACTGCCGCAGCAAATG--CCGA--GAAAAA--------ATATTCAGC    218
                     |   |||||.|||   |||  ||||  |.|.||        ||.|||||.
BPUM_2672___y    163 G---CTGCCACAG---ATGCACCGAAGGCACAAGCAGATCCATCTTCAGA    206

BSNT_04424___    219 GC------TAAACGCCGAATATAAAAACCTC-------ACAAAAGAGCAC    255
                     .|      ||||.|.|.||   |||.|.|||       |||.|| .||.|
BPUM_2672___y    207 ACAGCTCTTAAAGGACCAA---AAACAGCTCACTTCTGACATAA-CGCGC    252

BSNT_04424___    256 GAAGAACTTGAGAAAGAATATAAATCTGTCAGC-TCTGAAGCAAAGAAAT    304
                     ..|.||..|||.|||||    |.|.|||.|.|| |||            |
BPUM_2672___y    253 TTAAAAGCTGATAAAGA----AGAACTGACCGCTTCT------------T    286

BSNT_04424___    305 TAAAAGA--CAACAAAGAAGATCAAGACAAGCTTGAGAAGCTTAAAAACG    352
                     ||.|.||  ||||||||  |||.||||.||.||             ||||
BPUM_2672___y    287 TAGAGGACGCAACAAAG--GATAAAGAAAAACT-------------AACG    321

BSNT_04424___    353 AAAA---TAG---CGATCTA------AAAAAG----ACTCAGAAATCATT    386
                     ||||   |||   |.||| |      ||||||    |.|||.|||.||..
BPUM_2672___y    322 AAAAAGCTAGAAACCATC-ACCGCAGAAAAAGAAACAGTCAAAAAACAAG    370

BSNT_04424___    387 AAAAG--CTGAGATTAAAGAGCTTCA--AGAAAAT-CAAAAGC--AGCTC    429
                     |||||  |    |||.|||.||||.|  ||||||| .|.||||  |.|||
BPUM_2672___y    371 AAAAGACC----ATTCAAGCGCTTGAAGAGAAAATAGACAAGCTTACCTC    416

BSNT_04424___    430 AAAGAAGATGCAAAAACGGCAAAGGC-TGAAAATGAAACACTCCGACAAG    478
                     ||       ||   ||||  |||..| |.||||.||.|       |||||
BPUM_2672___y    417 AA-------GC---AACG--AAACACTTAAAAAAGAGA-------ACAAG    447

BSNT_04424___    479 ATAA-----AACAA-----AG-CT--TGAAAATCAA-----------TTA    504
                     |.||     |||.|     || ||  |..||.||||           |  
BPUM_2672___y    448 AAAAGCGGCAACGATACGGAGTCTTCTACAACTCAACGCTCCGCTCCT--    495

BSNT_04424___    505 AAAGA-GACGGAAAGCCAA--ACCGCCAGTTCTCATGAA-GACACTGGAA    550
                     ||||| ||.|||||   ||  ||.|.|.|   ||||||| .|||   |||
BPUM_2672___y    496 AAAGATGAAGGAAA---AAGCACAGGCGG---TCATGAATCACA---GAA    536

BSNT_04424___    551 GTTCTTCAAACAATACGAGTAAAAGTGATGAAACCAAAACAGCTGACAAA    600
                     |                            |||||.||||.||      ||
BPUM_2672___y    537 G----------------------------GAAACAAAAAAAG------AA    552

BSNT_04424___    601 GCAGAAGGCTGTAATATCAAAGGAAGCAAAAACGGCATCTACCACACGCC    650
                     .|.|.||.||||||.|||||||||||....|||||.||.||.|||||.||
BPUM_2672___y    553 TCTGCAGCCTGTAACATCAAAGGAAGTGTCAACGGTATTTATCACACACC    602

BSNT_04424___    651 AGGCAGTACATACTAC-----GACCGGACAACCGATCCGGCTGAAATGTT    695
                     ..||||.|.|||||||     .|||  |.||   ||....||.|||||||
BPUM_2672___y    603 GAGCAGCAGATACTACTCTAGAACC--AAAA---ATGTAACTAAAATGTT    647

BSNT_04424___    696 TTGCTCAGTTGAAGAAGCTGAAGC-CGCCGGTTATCGGGCGCCAAAACGA    744
                     ||||||.||.||||||||.| ||| .||.||.||.|||||.||.||.|.|
BPUM_2672___y    648 TTGCTCCGTAGAAGAAGCAG-AGCGTGCAGGGTACCGGGCACCTAAGCAA    696

BSNT_04424___    745 TAA    747
                     ||.
BPUM_2672___y    697 TAG    699


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