Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04424 and BPUM_2672
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_04424___yttA.1.24716.seq
# -bsequence dna-align/BPUM_2672___yttA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04424___yttA-BPUM_2672___yttA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04424___yttA-BPUM_2672___yttA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04424___yttA
# 2: BPUM_2672___yttA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 853
# Identity: 464/853 (54.4%)
# Similarity: 464/853 (54.4%)
# Gaps: 260/853 (30.5%)
# Score: 1047.0
#
#
#=======================================
BSNT_04424___ 1 ATGGAAATGGTATTAGCATTCTTAGGTTTTCTGGCATGTCT---CATTGC 47
||| |||.||.| || ||.|||||.||.| ||||.| ..||||
BPUM_2672___y 1 ATG---ATGTTACT--CA-TCATAGGTCTTTT---ATGTGTTTGTTTTGC 41
BSNT_04424___ 48 ACTGGGCTATGGATTATATCACCTTGTCAGATAT----GTACTGAAAAA- 92
..|.||.|||| || |||| ||.| .||||.|||.|
BPUM_2672___y 42 CATTGGATATG----------CC--GTCA-ATTTCTTCTTACTCAAACAC 78
BSNT_04424___ 93 -GGAA-----AAACGTTTCTCAAAGAGACTTTTTTGGCCGCTTTTCATTG 136
.||| |||..||| |||||||.|.|.||||..||..|.||.||
BPUM_2672___y 79 CAGAATGCGCAAATCTTT-TCAAAGAAATTATTTTATCCTTTCTTGAT-- 125
BSNT_04424___ 137 GAGGCCTTGTG-CTGCTCTTTACCGGGGCAGCAT--TGGCAGAACC---T 180
||||.| ||..|||||.| ||| ||.||..||| |
BPUM_2672___y 126 -----CTTGGGTCTCATCTTTTC--------CATTATGTCATTACCATTT 162
BSNT_04424___ 181 GACACTGCCGCAGCAAATG--CCGA--GAAAAA--------ATATTCAGC 218
| |||||.||| ||| |||| |.|.|| ||.|||||.
BPUM_2672___y 163 G---CTGCCACAG---ATGCACCGAAGGCACAAGCAGATCCATCTTCAGA 206
BSNT_04424___ 219 GC------TAAACGCCGAATATAAAAACCTC-------ACAAAAGAGCAC 255
.| ||||.|.|.|| |||.|.||| |||.|| .||.|
BPUM_2672___y 207 ACAGCTCTTAAAGGACCAA---AAACAGCTCACTTCTGACATAA-CGCGC 252
BSNT_04424___ 256 GAAGAACTTGAGAAAGAATATAAATCTGTCAGC-TCTGAAGCAAAGAAAT 304
..|.||..|||.||||| |.|.|||.|.|| ||| |
BPUM_2672___y 253 TTAAAAGCTGATAAAGA----AGAACTGACCGCTTCT------------T 286
BSNT_04424___ 305 TAAAAGA--CAACAAAGAAGATCAAGACAAGCTTGAGAAGCTTAAAAACG 352
||.|.|| |||||||| |||.||||.||.|| ||||
BPUM_2672___y 287 TAGAGGACGCAACAAAG--GATAAAGAAAAACT-------------AACG 321
BSNT_04424___ 353 AAAA---TAG---CGATCTA------AAAAAG----ACTCAGAAATCATT 386
|||| ||| |.||| | |||||| |.|||.|||.||..
BPUM_2672___y 322 AAAAAGCTAGAAACCATC-ACCGCAGAAAAAGAAACAGTCAAAAAACAAG 370
BSNT_04424___ 387 AAAAG--CTGAGATTAAAGAGCTTCA--AGAAAAT-CAAAAGC--AGCTC 429
||||| | |||.|||.||||.| ||||||| .|.|||| |.|||
BPUM_2672___y 371 AAAAGACC----ATTCAAGCGCTTGAAGAGAAAATAGACAAGCTTACCTC 416
BSNT_04424___ 430 AAAGAAGATGCAAAAACGGCAAAGGC-TGAAAATGAAACACTCCGACAAG 478
|| || |||| |||..| |.||||.||.| |||||
BPUM_2672___y 417 AA-------GC---AACG--AAACACTTAAAAAAGAGA-------ACAAG 447
BSNT_04424___ 479 ATAA-----AACAA-----AG-CT--TGAAAATCAA-----------TTA 504
|.|| |||.| || || |..||.|||| |
BPUM_2672___y 448 AAAAGCGGCAACGATACGGAGTCTTCTACAACTCAACGCTCCGCTCCT-- 495
BSNT_04424___ 505 AAAGA-GACGGAAAGCCAA--ACCGCCAGTTCTCATGAA-GACACTGGAA 550
||||| ||.||||| || ||.|.|.| ||||||| .||| |||
BPUM_2672___y 496 AAAGATGAAGGAAA---AAGCACAGGCGG---TCATGAATCACA---GAA 536
BSNT_04424___ 551 GTTCTTCAAACAATACGAGTAAAAGTGATGAAACCAAAACAGCTGACAAA 600
| |||||.||||.|| ||
BPUM_2672___y 537 G----------------------------GAAACAAAAAAAG------AA 552
BSNT_04424___ 601 GCAGAAGGCTGTAATATCAAAGGAAGCAAAAACGGCATCTACCACACGCC 650
.|.|.||.||||||.|||||||||||....|||||.||.||.|||||.||
BPUM_2672___y 553 TCTGCAGCCTGTAACATCAAAGGAAGTGTCAACGGTATTTATCACACACC 602
BSNT_04424___ 651 AGGCAGTACATACTAC-----GACCGGACAACCGATCCGGCTGAAATGTT 695
..||||.|.||||||| .||| |.|| ||....||.|||||||
BPUM_2672___y 603 GAGCAGCAGATACTACTCTAGAACC--AAAA---ATGTAACTAAAATGTT 647
BSNT_04424___ 696 TTGCTCAGTTGAAGAAGCTGAAGC-CGCCGGTTATCGGGCGCCAAAACGA 744
||||||.||.||||||||.| ||| .||.||.||.|||||.||.||.|.|
BPUM_2672___y 648 TTGCTCCGTAGAAGAAGCAG-AGCGTGCAGGGTACCGGGCACCTAAGCAA 696
BSNT_04424___ 745 TAA 747
||.
BPUM_2672___y 697 TAG 699
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