Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04417 and BPUM_2669
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_04417___leuS.1.24716.seq
# -bsequence dna-align/BPUM_2669___leuS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04417___leuS-BPUM_2669___leuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04417___leuS-BPUM_2669___leuS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04417___leuS
# 2: BPUM_2669___leuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2584
# Identity: 1884/2584 (72.9%)
# Similarity: 1884/2584 (72.9%)
# Gaps: 203/2584 ( 7.9%)
# Score: 7170.0
#
#
#=======================================
BSNT_04417___ 0 -------------------------------------------------- 0
BPUM_2669___l 1 GTGGTACCGCGGGAACCAAAAAATCTCTCGTCCCTTTCCAGGGATGAGGG 50
BSNT_04417___ 0 -------------------------------------------------- 0
BPUM_2669___l 51 TTTTTTGTTGATTTTAGAAAAATCTGAATTCTTGCAGTGGTCATCTGAGC 100
BSNT_04417___ 1 -----------------------------------TTGAGTTTTCAGCAC 15
||||||||||||||.
BPUM_2669___l 101 AGATACAGCCGTACATATTAAAGGAGGTTTTCACATTGAGTTTTCAGCAT 150
BSNT_04417___ 16 AAAGAGATAGAAAAGAAATGGCAAACATATTGGCTTGA-AAACAAAACAT 64
...||.||.||||||||.|||||....||||||| ||| |.|.|||||||
BPUM_2669___l 151 CGGGAAATTGAAAAGAAGTGGCAGGATTATTGGC-TGACACATAAAACAT 199
BSNT_04417___ 65 TTGCCAC-TCTTGA-TAATAATGAAAAACAAAAATTCTACGCGCTGGACA 112
|.||||| || ||| |...|| ||.||||.|||.|||||.||.||.||.|
BPUM_2669___l 200 TCGCCACATC-TGACTCGGAA-GATAAACCAAAGTTCTATGCACTTGATA 247
BSNT_04417___ 113 TGTTTCCTTACCCGTCTGGAGCTGGGTTGCACGTCGGCCATCCTGAAGGA 162
|||||||.|||||.||.|||||.|||.|.||.|||||.||||||||.||.
BPUM_2669___l 248 TGTTTCCATACCCATCAGGAGCAGGGCTTCATGTCGGGCATCCTGAGGGC 297
BSNT_04417___ 163 TACACAGCTACGGATATTCTGTCCCGCATGAAGCGCATGCAGGGCTATGA 212
||||||||.|||||||||.|.||.||||||||.||.||||||||.|||||
BPUM_2669___l 298 TACACAGCAACGGATATTTTATCACGCATGAAACGTATGCAGGGATATGA 347
BSNT_04417___ 213 TGTCCTTCATCCAATGGGCTGGGACGCATTCGGCCTGCCAGCTGAACAAT 262
|||.||||||||||||||.|||||||||||.||.||.|||||.|||||.|
BPUM_2669___l 348 TGTTCTTCATCCAATGGGATGGGACGCATTTGGTCTTCCAGCAGAACAGT 397
BSNT_04417___ 263 ACGCGCTTGACACAGGGAACGACCCCGCTGTGTTTAC-GAAGCAGAATAT 311
|.|||||.||.||||||||.||.||.||.||.||||| |||| ||||.||
BPUM_2669___l 398 ATGCGCTAGATACAGGGAATGATCCGGCGGTCTTTACAGAAG-AGAACAT 446
BSNT_04417___ 312 TGATAACTTCCGCCGCCAAATTCAAGCGCTTGGCTTCTCATATGACTGGG 361
..|||||||||||||.|||||||||.|.||.||.|||||.|||||.||||
BPUM_2669___l 447 CAATAACTTCCGCCGACAAATTCAATCACTCGGGTTCTCGTATGATTGGG 496
BSNT_04417___ 362 ATCGCGAAATCAATACGACTGACCCTGAA-TACTATAAATGGACGCAATG 410
||||.||||||||.||||||||.|| ||| ||.|||||||||||.|||||
BPUM_2669___l 497 ATCGAGAAATCAACACGACTGATCC-GAATTATTATAAATGGACACAATG 545
BSNT_04417___ 411 GATTTTCTTAAAGCTATACGAAAAAGGCCTTGCTTACGTTGACGAAGTGC 460
|||||||||.||..|.||||||||.||..|.||.||..|.||.|||||.|
BPUM_2669___l 546 GATTTTCTTGAAATTGTACGAAAAGGGATTGGCGTATATCGATGAAGTAC 595
BSNT_04417___ 461 CTGTAAACTGGTGCCCTGCGCTCGGTACTGTTCTTGCCAACGAAGAAGTC 510
|.||.|||||||||||.||.||.||.||.||.|||||.||.|||||||||
BPUM_2669___l 596 CAGTGAACTGGTGCCCAGCTCTTGGAACAGTCCTTGCAAATGAAGAAGTC 645
BSNT_04417___ 511 ATTGACGGCAAGAGCGAACGCGGCGGCCATCCGGTAGAGAGACGCCCAAT 560
|||||.||.||.||.||||||||.||.|||||.||.||.|||||.||.||
BPUM_2669___l 646 ATTGATGGAAAAAGTGAACGCGGAGGACATCCAGTTGAAAGACGTCCGAT 695
BSNT_04417___ 561 GAAGCAGTGGATGCTGAAAATCACCGCTTATGCGGACAGGCTCCTTGAGG 610
||||||.||||||||.||.||.||.|||||||||||||||||..|.||.|
BPUM_2669___l 696 GAAGCAATGGATGCTAAAGATTACGGCTTATGCGGACAGGCTGTTAGAAG 745
BSNT_04417___ 611 ACTTGGAAGAGCTTGATTGGCCGGAAAGCATTAAAGATATGCAGCGCAAC 660
|.||.|||||..||||||||||.|||||||||||||||||||||||.|||
BPUM_2669___l 746 ATTTAGAAGACATTGATTGGCCTGAAAGCATTAAAGATATGCAGCGTAAC 795
BSNT_04417___ 661 TGGATCGGCCGTTCGGAAGGCGCTCACGTTCATTTTGCTATAGATGGACA 710
|||||.||.|||||.|||||.||.|||||||||||.|..|||||.|||||
BPUM_2669___l 796 TGGATTGGACGTTCAGAAGGTGCACACGTTCATTTCGAAATAGAAGGACA 845
BSNT_04417___ 711 TGATGATTCCTTTACGGTGTTTACAACAAGACCAGATACGCTGTTTGGCG 760
|||.||....|||||.||.|||||||||.|.||.|||||..|||||||.|
BPUM_2669___l 846 TGACGAACAGTTTACTGTATTTACAACACGTCCTGATACATTGTTTGGTG 895
BSNT_04417___ 761 CTACATACACTGTCCTTGCCCCGGAACACGCATTGGTGGAAAACATCACA 810
|.||.||..|.||.|||||.||.|||||.|||.||||.|||||.||.|||
BPUM_2669___l 896 CAACCTATGCGGTACTTGCACCAGAACATGCACTGGTTGAAAAAATTACA 945
BSNT_04417___ 811 ACGGCAGAGCAAAAAGAAGCTGTTGAAGCTTATATCAAAGAAATTCAATC 860
||.||....||||||||.||.||.|||||.|||||.||||||||||||||
BPUM_2669___l 946 ACAGCTACTCAAAAAGAGGCAGTCGAAGCATATATAAAAGAAATTCAATC 995
BSNT_04417___ 861 AAAGAGTGACCTAGAACGCACAGATCTTGCGAAAACAAAGACAGGCGTAT 910
.|||||.|||.||||.||.|||||||||||.||||||||||| |.||||
BPUM_2669___l 996 TAAGAGCGACTTAGAGCGTACAGATCTTGCAAAAACAAAGAC--GGGTAT 1043
BSNT_04417___ 911 TT--ACAGGAGCGTATGCGATCAATCCTGTAAACGGAGAAAAACTGCCGA 958
|| ||.||.||.|||||..|||||||..||||.||.|||||..||||||
BPUM_2669___l 1044 TTTCACTGGCGCTTATGCCGTCAATCCATTAAATGGTGAAAAGATGCCGA 1093
BSNT_04417___ 959 TTTGGATTGCGGATTATGTTCTTGCATCATACGGAACAGGTGCTGTCATG 1008
|.||||||||.|||||.||.||.||..|.||.||||||||.||..|.|||
BPUM_2669___l 1094 TCTGGATTGCAGATTACGTGCTGGCTACTTATGGAACAGGGGCGATTATG 1143
BSNT_04417___ 1009 GCAGTTCCTGGACACGATGAGCGTGATTTTGAATTCGCCAAAACATTCGG 1058
||.||.||||..||.|||||||||||.|.||||||.|||||||||||.|.
BPUM_2669___l 1144 GCGGTACCTGCCCATGATGAGCGTGACTATGAATTTGCCAAAACATTTGA 1193
BSNT_04417___ 1059 CCTTCCGGTGAAGGAAGTCGTAAAAGGCGGGAACGTTGAGGAAGCAGCCT 1108
.|||||..|.||||.|||.||..|||||||..||.||||.||||.|||.|
BPUM_2669___l 1194 TCTTCCAATCAAGGCAGTTGTCGAAGGCGGAGACATTGAAGAAGAAGCTT 1243
BSNT_04417___ 1109 ATACTGGCGACGGCGAGCACGTGAACTCTGATTTCCTGAACGGCCTTCAC 1158
|.||.||.||.||..|.|||.|.||||||||||||||..|.||..|....
BPUM_2669___l 1244 ACACAGGTGATGGAAAACACATCAACTCTGATTTCCTTGATGGATTAGGA 1293
BSNT_04417___ 1159 AAACAGGAAGCGATTGAGAAAGTGATCGCTTGGCTGGAAGAA-ACGAAAA 1207
|||.|.|||||||||||.|||||.||.||.|||||||||||| |..||||
BPUM_2669___l 1294 AAAGAAGAAGCGATTGAAAAAGTCATTGCATGGCTGGAAGAACATCAAAA 1343
BSNT_04417___ 1208 ACGGTGAGAAGAAAGTGACGTACCGTCTTCGTGACTGGCTCTTCAGCCGC 1257
| ||.||.||||||||.||.||.|||.|..|.||.|||||.||.|||||.
BPUM_2669___l 1344 A-GGCGAAAAGAAAGTCACTTATCGTTTAAGAGATTGGCTATTTAGCCGT 1392
BSNT_04417___ 1258 CAGCGTTATTGGGGCGAGCCGATTCCGGTCATTCATTGGGAAGACGGAAC 1307
||||||||||||||.|||||.|||||..|.|||||||||||.||.|||||
BPUM_2669___l 1393 CAGCGTTATTGGGGTGAGCCAATTCCAATTATTCATTGGGAGGATGGAAC 1442
BSNT_04417___ 1308 GTCAACAGCTGTCCCTGAAGAGGAGCTGCCGCTGATTTTGCCGAAAACGG 1357
|||..|||||||..||||.||.||.||.||.|||||||||||.||.|||.
BPUM_2669___l 1443 GTCTTCAGCTGTTTCTGAGGAAGACCTTCCACTGATTTTGCCTAAGACGA 1492
BSNT_04417___ 1358 ATGAAATCAAACCGAGCGGAACGGGCGAATCACCGCTTGCGAACATTAAA 1407
.|||.||.||.||.||.||.||.||.||||||||..|.|||||.||.|||
BPUM_2669___l 1493 CTGAGATTAAGCCAAGTGGTACAGGTGAATCACCTTTAGCGAATATCAAA 1542
BSNT_04417___ 1408 GAGTGGGTGGAAGTCACAGACCCTGAGACAGGGAAAAAAGGAAGAAGAGA 1457
||.|||||.||.||....||.||||..|||||.|||||||||.|..|.||
BPUM_2669___l 1543 GATTGGGTTGAGGTTGTCGATCCTGTTACAGGTAAAAAAGGACGCCGTGA 1592
BSNT_04417___ 1458 AACGAATACAATGCCGCAATGGGCGGGAAGCTGCTGGTATTTCTTGCGCT 1507
|||.||||||||||||||||||||.||.|||||||||||||||||.||.|
BPUM_2669___l 1593 AACCAATACAATGCCGCAATGGGCAGGCAGCTGCTGGTATTTCTTACGTT 1642
BSNT_04417___ 1508 ATATTGATCCGCACAATCCGGATCAGCTGGCATCACCAGAAAAATTGGAA 1557
|||||||.|||||.||..|.||..|.||.|||||.||.||.||.||..|.
BPUM_2669___l 1643 ATATTGACCCGCATAACTCAGAAGAACTTGCATCTCCTGAGAAGTTAAAG 1692
BSNT_04417___ 1558 AAATGGCTTCCGGTCGATATGTATATCGGCGGTGCAGAGCATGCCGTGCT 1607
||||||||||||||.|||.|.|||||||||||.|||||.|||||.||.||
BPUM_2669___l 1693 AAATGGCTTCCGGTTGATGTATATATCGGCGGAGCAGAACATGCTGTACT 1742
BSNT_04417___ 1608 TCACCTTCTGTATGCCCGCTTCTGGCATAAGTTCCTTTATGATATCGGCG 1657
|||.|||||.|||||.|||||||||||||||||..|.||||||||.||.|
BPUM_2669___l 1743 TCATCTTCTATATGCACGCTTCTGGCATAAGTTTTTGTATGATATTGGTG 1792
BSNT_04417___ 1658 TAGTGCCGACGAAAGAACCGTTCCAAAAGCTGTACAACCAAGGAATGATT 1707
|.||.||.||.||||||||.|||...||..|||.||||||||||||||||
BPUM_2669___l 1793 TTGTTCCAACAAAAGAACCTTTCATGAAATTGTTCAACCAAGGAATGATT 1842
BSNT_04417___ 1708 CTCGGTGAAAATAACGAAAAAATGAGTAAATCTAAAGGGAACGTTGTCAA 1757
||.||.||||||||.|||||||||||||||||.|||||.||.||||||||
BPUM_2669___l 1843 CTTGGGGAAAATAATGAAAAAATGAGTAAATCAAAAGGAAATGTTGTCAA 1892
BSNT_04417___ 1758 CCCTGACGAAATCGTGGCCTCTCACGGTGCTGATACGCTGAGATTGTACG 1807
.||.||.||.|||||.|..|||||.|||||.|||||..|..||.|.||.|
BPUM_2669___l 1893 TCCAGATGATATCGTAGAATCTCATGGTGCGGATACTTTACGACTTTATG 1942
BSNT_04417___ 1808 AAATGTTCATGGGACCTCTTGATGCTTCAATCGCCTGGTCTGAATCAGGA 1857
|||||||||||||||||.|.|||||.||||||||.|||||||||.|||||
BPUM_2669___l 1943 AAATGTTCATGGGACCTTTAGATGCATCAATCGCTTGGTCTGAAACAGGA 1992
BSNT_04417___ 1858 TTAGACGGTGCGCGCCGTTTCCTTGACCGTGTATGGCGCCTATT---TAT 1904
.|.||.|||||.||||||||||||||.||.||||||||.||.|| .|.
BPUM_2669___l 1993 CTTGATGGTGCTCGCCGTTTCCTTGATCGAGTATGGCGTCTCTTCACAAA 2042
BSNT_04417___ 1905 TGAAGA------CAGCGGTGAGCT----TAATGGAAAAATCGTTGAAGGC 1944
|||||| .|.|.|||| | |||.|||..||.| ||.||||
BPUM_2669___l 2043 TGAAGATGGCACAATCAGTGA--TAAAGTAACGGAGCAAAC--TGGAGGC 2088
BSNT_04417___ 1945 GCTGGTGAAACATTGGAGCGCGTCTATCATGAAACGGTTATGAAAGTCAC 1994
| |.||.||.|||..||||||||||||.||.|||||.||.||
BPUM_2669___l 2089 G---------CCTTAGAACGCAGCTATCATGAAACTGTGATGAAGGTAAC 2129
BSNT_04417___ 1995 AGACCATTATGAAGGCCTTCGTTTCAACACAGGTATTTCCCAGCTGATGG 2044
||||||||||||.||.||.||.|||||.|||||.|||||.||..|.||||
BPUM_2669___l 2130 AGACCATTATGAGGGACTGCGCTTCAATACAGGGATTTCACAATTAATGG 2179
BSNT_04417___ 2045 TCTTTATTAATGAAGCTTATAAAGCAACAGA---ACTGCCGAAAGAATAT 2091
|.|||||.||.||.||.||.||.| |.|| |.||||||||||||||
BPUM_2669___l 2180 TGTTTATCAACGATGCCTACAAGG---CTGATACATTGCCGAAAGAATAT 2226
BSNT_04417___ 2092 ATGGAAGGCTTCGTGAAGCTTCTTTCTCCTGTCGCGCCACACTTAGCGGA 2141
...||||||||.|||||.|||||||||||..|.||.||.||..|||||||
BPUM_2669___l 2227 GCAGAAGGCTTTGTGAAACTTCTTTCTCCAATTGCACCGCATCTAGCGGA 2276
BSNT_04417___ 2142 AGAGCTTTGGGAGAAGCTTGGCCATTCCGGCACAATTGCCTACGAAGCTT 2191
||||||||||.|.||.|||||.|||...||..|.|||.|.||.|||||.|
BPUM_2669___l 2277 AGAGCTTTGGAATAAACTTGGTCATGAAGGGTCTATTTCTTATGAAGCAT 2326
BSNT_04417___ 2192 GGCCTGTATATGATGAAACAAAACTTGTGGATGATGAAGTTGAAATCGTT 2241
||||...||||||.||..||||.|||||.||.||||||||.|||||.||.
BPUM_2669___l 2327 GGCCACAATATGACGAGTCAAAGCTTGTCGACGATGAAGTAGAAATTGTC 2376
BSNT_04417___ 2242 GTTCAGCTGAACGGAAAAGTAAAAGCGAAATTACAGGTTCCTGCCGATGC 2291
||.|||.||||.||.|||||.|||||.||||||...||||||||.|||||
BPUM_2669___l 2377 GTACAGTTGAATGGGAAAGTGAAAGCAAAATTAACTGTTCCTGCTGATGC 2426
BSNT_04417___ 2292 AACGAAAGAACAGCTGGAACAGCTTGCTCAAGCAGATGAAAAG------- 2334
.||.||||||||..|.|||.|.||||| ||||||
BPUM_2669___l 2427 CACTAAAGAACAATTAGAAGATCTTGC----------GAAAAGTGATGCA 2466
BSNT_04417___ 2335 ---GTCAAAGAGCAGCTTGAAGGCAAAACGATTCGGAAAATCATCGCGGT 2381
||.|||||.|||||||||||.|||||.|||||.|||.|.||.|||||
BPUM_2669___l 2467 CGTGTAAAAGAACAGCTTGAAGGGAAAACCATTCGCAAAGTGATTGCGGT 2516
BSNT_04417___ 2382 GCCTGGCACGCTTGTCAATATTGTGGCAAACTAA 2415
.|||||.|.|||||||||||||||.||.||.|||
BPUM_2669___l 2517 TCCTGGGAAGCTTGTCAATATTGTTGCGAATTAA 2550
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